ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Trpv6

Full Name:

transient receptor potential cation channel, subfamily V, member 6

Alias:

CaT1|Ecac2|Otrpc3

Organism:

Rattus norvegicus (Rat)

Chromosome:

Genetic Location:

4q22

Physical Location:

69331972-69347634 on NC_005103.2, complement

Gene Type:

protein-coding

Human Ortholog:

GeneID: 55503 Symbol (Name): TRPV6 (transient receptor potential cation channel, subfamily V, member 6)

Ortholog Status:

The human GeneID 55503 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Trpv6
Fold Change:		1.27
P Value:		0.006
Note:		Differential expression between ethanol and saccharin groups in amygdala

Dataset Information

Name:		18405950
Method:		Microarray
Tissue:		Nucleus accumbens and amygdala
Phenotype:		Ethanol self-administration, alcohol-preferring
Publication:		Rodd et al. Pharmacol Biochem Behav. (2008) Differential gene expression in the nucleus accumbens with ethanol self-administration in inbred alcohol-preferring rats. PubMed
Summary:		The current study examined the effects of operant ethanol (EtOH) self-administration on gene expression kin the nucleus accumbens (ACB) and amygdala (AMYG) of inbred alcohol-preferring (iP) rats. Rats self-trained on a standard two-lever operant paradigm to administer either water-water, EtOH (15% v/v)-water, or saccharin (SAC; 0.0125% g/v)-water. For the ACB, there were 513 significant differences at the p < 0.01 level in named genes: 55 between SAC and water; 215 between EtOH and water, and 243 between EtOH and SAC. In the case of the AMYG (p < 0.01), there were 48 between SAC and water, 23 between EtOH and water, and 63 between EtOH and SAC group.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_053686.1	NP_446138.1	NC_005103.2 range: 69331972..69347634, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0016021	integral to membrane	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA
GO:0005516	calmodulin binding	Molecular Function	ISS
GO:0005516	calmodulin binding	Molecular Function	IEA
GO:0005509	calcium ion binding	Molecular Function	IEA
GO:0005262	calcium channel activity	Molecular Function	ISS
GO:0005262	calcium channel activity	Molecular Function	IEA
GO:0005227	calcium activated cation channel activity	Molecular Function	TAS (12138163)
GO:0005216	ion channel activity	Molecular Function	IEA
GO:0006811	ion transport	Biological Process	IEA
GO:0006816	calcium ion transport	Biological Process	IEA
GO:0006816	calcium ion transport	Biological Process	ISS