| Gene Information |
| Gene ID: | | 20394 |
| Symbol: | | Scg5 |
| Full Name: | | secretogranin V |
| Alias: | | 7B2|AI325031|Sgne-1|Sgne1 |
| Organism: | | Mus musculus (Mouse) |
| Chromosome: | | 2 |
| Genetic Location: | | 2 E5|2 64.0 cM |
| Physical Location: | | 113616469-113669247 on NC_000068.6, complement |
| Gene Type: | | protein-coding |
| Human Ortholog: | | GeneID: 6447 Symbol (Name): SCG5 (secretogranin V (7B2 protein)) |
| Ortholog Status: | | The human GeneID 6447 is not in current human dataset. |
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| Gene in Ethanol Study Datasets |
| Gene Information | | Original ID1: | | 1423150 (probe) | | Original ID2: | | Sgne1 | | Fold Change: | | 1.82 | | P Value: | | 8.00E-09 | | Note: | | Highest priority differential expression on 430A array. Direction: D2>B6; Cis LOD:19.9 |
| | Gene Information | | Original ID1: | | 100131 (probe) | | Original ID2: | | Sgne1 | | Fold Change: | | 2.24 | | P Value: | | 2.70E-08 | | Note: | | Highest priority differential expression on U74Av2 array. Direction: D2>B6; Cis LOD:15.8 |
| | Dataset Information | | Name: | | 15597075 | | Method: | | Microarray and QTL | | Tissue: | | Brain | | Phenotype: | | Acute ethanol withdrawal, Chronic ethanol withdrawal, Ethanol preference drinking, Ethanol-stimulated activity | | Publication: | | Hitzemann et al. Alcohol Clin Exp Res. (2004) On the integration of alcohol-related quantitative trait loci and gene expression analyses. PubMed | | Summary: | | Six ethanol-related QTLs, all detected in C57BL/6J and DBA/2J intercrosses were entered into the analysis.Brain gene expression data for the C57BL/6 and DBA/2 strains (n=6 per strain) and an F2 intercross sample (n=56) derived from these strains were obtained by using the Affymetrix U74Av2 and 430A arrays; additional data with the U74Av2 array were available for the extended amygdala, dorsomedial striatum, and hippocampus.Within the 6 QTL intervals, 39 transcripts (430A array) were identified as being highly likely to be differentially expressed between the C57BL/6 and DBA/2 strains at a false discovery rate of 0.01 or better. The p value is from the t test comparison between the C57BL/6J (B6) and DBA/2J (D2) inbred strains. The phenotype of each gene are based on the QTL phenotype. |
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| Gene Refseq Sequence Annotation |
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| Gene Ontology (GO) Annotation |
| GO ID | GO Term | Category | Evidence (PubMed) | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005615 | extracellular space | Cellular Component | RCA (12466851) | |
| GO:0030141 | secretory granule | Cellular Component | IEA | |
| GO:0004857 | enzyme inhibitor activity | Molecular Function | IDA (8016065) | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0006886 | intracellular protein transport | Biological Process | IDA (9348280) | |
| GO:0007218 | neuropeptide signaling pathway | Biological Process | IEA | |
| GO:0016486 | peptide hormone processing | Biological Process | IDA (10089884) | |
| GO:0046883 | regulation of hormone secretion | Biological Process | IDA (10089884) | |
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| Other Database Cross Links |
| NCBI Entrez Gene: | | 20394 |
| MGI: | |
| Ensembl: | | ENSMUSG00000023236 |
| dbSNP: | | Scg5 |
| AceView: | | Scg5 |
