ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Slc22a17

Full Name:

solute carrier family 22 (organic cation transporter), member 17

Alias:

Boct|MGC116043|rBOCT

Organism:

Rattus norvegicus (Rat)

Chromosome:

Genetic Location:

15p13

Physical Location:

33008683-33015178 on NC_005114.2, complement

Gene Type:

protein-coding

Human Ortholog:

GeneID: 51310 Symbol (Name): SLC22A17 (solute carrier family 22, member 17)

Ortholog Status:

The human GeneID 51310 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Slc22a17
Fold Change:		1.11
P Value:		0.005
Note:		Differential expression between ethanol and water groups in nucleus accumbens

Dataset Information

Name:		18405950
Method:		Microarray
Tissue:		Nucleus accumbens and amygdala
Phenotype:		Ethanol self-administration, alcohol-preferring
Publication:		Rodd et al. Pharmacol Biochem Behav. (2008) Differential gene expression in the nucleus accumbens with ethanol self-administration in inbred alcohol-preferring rats. PubMed
Summary:		The current study examined the effects of operant ethanol (EtOH) self-administration on gene expression kin the nucleus accumbens (ACB) and amygdala (AMYG) of inbred alcohol-preferring (iP) rats. Rats self-trained on a standard two-lever operant paradigm to administer either water-water, EtOH (15% v/v)-water, or saccharin (SAC; 0.0125% g/v)-water. For the ACB, there were 513 significant differences at the p < 0.01 level in named genes: 55 between SAC and water; 215 between EtOH and water, and 243 between EtOH and SAC. In the case of the AMYG (p < 0.01), there were 48 between SAC and water, 23 between EtOH and water, and 63 between EtOH and SAC group.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_177421.3	NP_803156.2	NC_005114.2 range: 33008683..33015178, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0016020	membrane	Cellular Component	IEA
GO:0016021	integral to membrane	Cellular Component	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0004812	aminoacyl-tRNA ligase activity	Molecular Function	IEA
GO:0005215	transporter activity	Molecular Function	IEA
GO:0005524	ATP binding	Molecular Function	IEA
GO:0006418	tRNA aminoacylation for protein translation	Biological Process	IEA
GO:0006810	transport	Biological Process	IEA