ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Snta1

Full Name:

syntrophin, acidic 1

Organism:

Rattus norvegicus (Rat)

Chromosome:

Genetic Location:

3q41

Physical Location:

144843676-144874234 on NC_005102.2, complement

Gene Type:

protein-coding

Human Ortholog:

GeneID: 6640 Symbol (Name): SNTA1 (syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component))

Ortholog Status:

The human GeneID 6640 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Snta1
Fold Change:		1.12
P Value:		0.007
Note:		Differential expression between ethanol and saccharin groups in nucleus accumbens

Dataset Information

Name:		18405950
Method:		Microarray
Tissue:		Nucleus accumbens and amygdala
Phenotype:		Ethanol self-administration, alcohol-preferring
Publication:		Rodd et al. Pharmacol Biochem Behav. (2008) Differential gene expression in the nucleus accumbens with ethanol self-administration in inbred alcohol-preferring rats. PubMed
Summary:		The current study examined the effects of operant ethanol (EtOH) self-administration on gene expression kin the nucleus accumbens (ACB) and amygdala (AMYG) of inbred alcohol-preferring (iP) rats. Rats self-trained on a standard two-lever operant paradigm to administer either water-water, EtOH (15% v/v)-water, or saccharin (SAC; 0.0125% g/v)-water. For the ACB, there were 513 significant differences at the p < 0.01 level in named genes: 55 between SAC and water; 215 between EtOH and water, and 243 between EtOH and SAC. In the case of the AMYG (p < 0.01), there were 48 between SAC and water, 23 between EtOH and water, and 63 between EtOH and SAC group.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
XM_342548.3	XP_342549.2	NC_005102.2 range: 144843676..144874234, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0042383	sarcolemma	Cellular Component	ISS
GO:0045211	postsynaptic membrane	Cellular Component	ISS
GO:0005515	protein binding	Molecular Function	IPI
GO:0030165	PDZ domain binding	Molecular Function	IPI (15024025)
GO:0007528	neuromuscular junction development	Biological Process	ISS