ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Atg16l1

Full Name:

autophagy-related 16-like 1 (yeast)

Alias:

Apg16l|Wdr30

Organism:

Rattus norvegicus (Rat)

Chromosome:

Genetic Location:

9q35

Physical Location:

86711964-86747372 on NC_005108.2

Gene Type:

protein-coding

Human Ortholog:

GeneID: 55054 Symbol (Name): ATG16L1 (ATG16 autophagy related 16-like 1 (S. cerevisiae))

Ortholog Status:

The human GeneID 55054 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Rn.8130
Fold Change:		1.23
P Value:		0.00257
Note:		Lower levels in the hippocampus of iP than iNP rats

Dataset Information

Name:		15660665
Method:		Microarray
Tissue:		Hippocampus
Phenotype:		Alcohol-preferring, alcohol-nonpreferring
Publication:		Edenberg et al. Genes Brain Behav. (2005) Gene expression in the hippocampus of inbred alcohol-preferring and -nonpreferring rats. PubMed
Summary:		The objective of this study was to test the hypothesis that there are innate differences in gene expression in the hippocampus of inbred alcohol-preferring (iP) and -nonpreferring (iNP) rats that may contribute to differences in sensitivity to ethanol and/or in the development of tolerance. Affymetrix microarrays were used to measure gene expression in the hippocampus of alcohol-naive male iP and iNP rats in two experiments (n = 4 and 6 per strain in the two experiments). Combining data from the two experiments, there were 137 probesets representing 129 genes that significantly differed (P ? 0.01).

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
XM_343619.3	XP_343620.3	NC_005108.2 range: 86711964..86747372

Gene Ontology (GO) Annotation