| Gene Information |
| Gene ID: | | 56009 |
| Symbol: | | Refbp2 |
| Full Name: | | RNA and export factor binding protein 2 |
| Alias: | | C130042O11Rik|MGC117570|REF2 |
| Organism: | | Mus musculus (Mouse) |
| Chromosome: | | 1 |
| Genetic Location: | | 1 H3 |
| Physical Location: | | 173433608-173434880 on NC_000067.5 |
| Gene Type: | | protein-coding |
| Human Ortholog: | | This gene has no human ortholog. |
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| Gene in Ethanol Study Datasets |
| Gene Information | | Original ID1: | | 1422993 (probe) | | Original ID2: | | Refbp2 | | Fold Change: | | 1.16 | | P Value: | | 4.60E-06 | | Note: | | Highest priority differential expression on 430A array. Direction: D2>B6; Cis LOD:2 |
| | Dataset Information | | Name: | | 15597075 | | Method: | | Microarray and QTL | | Tissue: | | Brain | | Phenotype: | | Acute ethanol withdrawal, Chronic ethanol withdrawal, Ethanol preference drinking, Ethanol-stimulated activity | | Publication: | | Hitzemann et al. Alcohol Clin Exp Res. (2004) On the integration of alcohol-related quantitative trait loci and gene expression analyses. PubMed | | Summary: | | Six ethanol-related QTLs, all detected in C57BL/6J and DBA/2J intercrosses were entered into the analysis.Brain gene expression data for the C57BL/6 and DBA/2 strains (n=6 per strain) and an F2 intercross sample (n=56) derived from these strains were obtained by using the Affymetrix U74Av2 and 430A arrays; additional data with the U74Av2 array were available for the extended amygdala, dorsomedial striatum, and hippocampus.Within the 6 QTL intervals, 39 transcripts (430A array) were identified as being highly likely to be differentially expressed between the C57BL/6 and DBA/2 strains at a false discovery rate of 0.01 or better. The p value is from the t test comparison between the C57BL/6J (B6) and DBA/2J (D2) inbred strains. The phenotype of each gene are based on the QTL phenotype. |
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| QTL Information | | QTL | Phenotype | Chr | Peak (cM) | LOD | P Value | Range | Status | QTL Link | |
| Alcw1 | Acute Alcohol Withdrawal | 1 | 96 | 172.3-176.5 (Mb) | 5.6 | 3.00E-07 | Significant | PARC |
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| Gene Refseq Sequence Annotation |
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| Gene Ontology (GO) Annotation |
| GO ID | GO Term | Category | Evidence (PubMed) | |
| GO:0005681 | spliceosome | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IDA (10786854) | |
| GO:0003697 | single-stranded DNA binding | Molecular Function | IDA (10786854) | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0006397 | mRNA processing | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0008380 | RNA splicing | Biological Process | IEA | |
| GO:0051028 | mRNA transport | Biological Process | IEA | |
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| Other Database Cross Links |
| NCBI Entrez Gene: | | 56009 |
| MGI: | |
| Ensembl: | | ENSMUSG00000060244 |
| dbSNP: | | Refbp2 |
| AceView: | | Refbp2 |
