ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

SERINC1

Full Name:

serine incorporator 1

Alias:

KIAA1253|TDE1L|TDE2|TMS-2

Organism:

Homo sapiens (Human)

Chromosome:

6

Genetic Location:

6q22.31

Physical Location:

122806191-122834650 on NC_000006.10, complement

Gene Type:

protein-coding

Orthologs:

This gene has no orthologs in other dataset(s).

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Hs.146668
Note:		"Class II, down-regulated gene"

Dataset Information

Name:		16292326
Method:		Microarray
Tissue:		Frontal cortex
Phenotype:		Alcohol dependence (AD)/Alcohol abuse/Alcoholism
Publication:		Liu et al. Neuropsychopharmacology. (2006) Patterns of gene expression in the frontal cortex discriminate alcoholic from nonalcoholic individuals. PubMed
Summary:		In the present study, microarray analysis (approximately 47,000 elements) was performed on the superior frontal cortex of 27 individual human cases (14 well characterized alcoholics and 13 matched controls). A classification system was developed in which differentially expressed genes were divided into two classes. Class I genes were qualitatively different, that is, they were predominantly detected in one group but not the other. Multiple criteria were used to define Class II genes. First, only the genes detected on over 80% of the arrays in both groups. Class II were then defined as those consistently detected in both groups having absolute PLS loadings scores of >2.0 and t- probabilities of <0.05.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_020755.2	NP_065806.1	NC_000006.10 range: 122806191..122834650, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005783	endoplasmic reticulum	Cellular Component	IEA
GO:0005789	endoplasmic reticulum membrane	Cellular Component	ISS
GO:0005886	plasma membrane	Cellular Component	ISS
GO:0016021	integral to membrane	Cellular Component	IEA
GO:0005515	protein binding	Molecular Function	ISS
GO:0015194	L-serine transmembrane transporter activity	Molecular Function	ISS
GO:0015825	L-serine transport	Biological Process	ISS
GO:0008654	phospholipid biosynthetic process	Biological Process	IEA
GO:0006665	sphingolipid metabolic process	Biological Process	ISS
GO:0006658	phosphatidylserine metabolic process	Biological Process	ISS
GO:0006629	lipid metabolic process	Biological Process	IEA
GO:0051347	positive regulation of transferase activity	Biological Process	ISS

Other Database Cross Links

NCBI Entrez Gene:

HGNC:

Ensembl:

ENSG00000111897

MIM:

HPRD:

HuGE Navigator:

dbSNP:

GeneCard:

AceView: