ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Cldn1

Full Name:

claudin 1

Organism:

Rattus norvegicus (Rat)

Chromosome:

Genetic Location:

11q22

Physical Location:

76473653-76488808 on NC_005110.2

Gene Type:

protein-coding

Human Ortholog:

GeneID: 9076 Symbol (Name): CLDN1 (claudin 1)

Ortholog Status:

The human GeneID 9076 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Cldn1
Fold Change:		-1.15
P Value:		0.005
Note:		Differential expression between ethanol and saccharin groups in nucleus accumbens

Dataset Information

Name:		18405950
Method:		Microarray
Tissue:		Nucleus accumbens and amygdala
Phenotype:		Ethanol self-administration, alcohol-preferring
Publication:		Rodd et al. Pharmacol Biochem Behav. (2008) Differential gene expression in the nucleus accumbens with ethanol self-administration in inbred alcohol-preferring rats. PubMed
Summary:		The current study examined the effects of operant ethanol (EtOH) self-administration on gene expression kin the nucleus accumbens (ACB) and amygdala (AMYG) of inbred alcohol-preferring (iP) rats. Rats self-trained on a standard two-lever operant paradigm to administer either water-water, EtOH (15% v/v)-water, or saccharin (SAC; 0.0125% g/v)-water. For the ACB, there were 513 significant differences at the p < 0.01 level in named genes: 55 between SAC and water; 215 between EtOH and water, and 243 between EtOH and SAC. In the case of the AMYG (p < 0.01), there were 48 between SAC and water, 23 between EtOH and water, and 63 between EtOH and SAC group.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_031699.2	NP_113887.2	NC_005110.2 range: 76473653..76488808

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0016328	lateral plasma membrane	Cellular Component	IDA (11159859)
GO:0005923	tight junction	Cellular Component	IDA (11159859)
GO:0005923	tight junction	Cellular Component	ISS
GO:0016020	membrane	Cellular Component	IEA
GO:0016021	integral to membrane	Cellular Component	IEA
GO:0030054	cell junction	Cellular Component	IEA
GO:0030165	PDZ domain binding	Molecular Function	IPI (12403818)
GO:0005198	structural molecule activity	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	ISS
GO:0042802	identical protein binding	Molecular Function	ISS
GO:0016338	calcium-independent cell-cell adhesion	Biological Process	ISS
GO:0042552	myelination	Biological Process	IPI (12403818)