| Gene Information |
| Gene ID: | | 7916 |
| Symbol: | | BAT2 |
| Full Name: | | HLA-B associated transcript 2 |
| Alias: | | D6S51|D6S51E|DKFZp686D09175|G2 |
| Organism: | | Homo sapiens (Human) |
| Chromosome: | | 6 |
| Genetic Location: | | 6p21.3 |
| Physical Location: | | 31696428-31713532 on NC_000006.10 |
| Gene Type: | | protein-coding |
| Orthologs: | | This gene has Mouse: 53761 ortholog(s) in other dataset(s). |
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| Gene in Ethanol Study Datasets |
| Gene Information | | Original ID1: | | Hs.436093 | | Note: | | "Class II, up-regulated gene" |
| | Dataset Information | | Name: | | 16292326 | | Method: | | Microarray | | Tissue: | | Frontal cortex | | Phenotype: | | Alcohol dependence (AD)/Alcohol abuse/Alcoholism | | Publication: | | Liu et al. Neuropsychopharmacology. (2006) Patterns of gene expression in the frontal cortex discriminate alcoholic from nonalcoholic individuals. PubMed | | Summary: | | In the present study, microarray analysis (approximately 47,000 elements) was performed on the superior frontal cortex of 27 individual human cases (14 well characterized alcoholics and 13 matched controls). A classification system was developed in which differentially expressed genes were divided into two classes. Class I genes were qualitatively different, that is, they were predominantly detected in one group but not the other. Multiple criteria were used to define Class II genes. First, only the genes detected on over 80% of the arrays in both groups. Class II were then defined as those consistently detected in both groups having absolute PLS loadings scores of >2.0 and t- probabilities of <0.05. |
| | Gene Information | | | Dataset Information | | Name: | | Literature Search | | Method: | | Literature search | | Summary: | | We search all human protein coding gene names and the keywords Alcohol or Ethanol or Alcoholism in the title or abstract of all PUBMED publications. For those gene name less than 3 characters or search result hits more than 100, we use the full name to search again and manually check the results to reduce false positive. |
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| Gene Refseq Sequence Annotation |
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| Gene Ontology (GO) Annotation |
| GO ID | GO Term | Category | Evidence (PubMed) | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005515 | protein binding | Molecular Function | IPI (14667819|16713569) | |
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| Other Database Cross Links |
| NCBI Entrez Gene: | | 7916 |
| HGNC: | | 13918 |
| Ensembl: | | ENSG00000204469 |
| MIM: | | 142580 |
| HPRD: | | 00807 |
| HuGE Navigator: | | 7916 |
| dbSNP: | | BAT2 |
| GeneCard: | | BAT2 |
| AceView: | | BAT2 |
