ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

Rpo1-4

Full Name:

RNA polymerase 1-4

Alias:

Rpa1

Organism:

Rattus norvegicus (Rat)

Chromosome:

Genetic Location:

4q33

Physical Location:

105187425-105251390 on NC_005103.2

Gene Type:

protein-coding

Human Ortholog:

GeneID: 25885 Symbol (Name): POLR1A (polymerase (RNA) I polypeptide A, 194kDa)

Ortholog Status:

The human GeneID 25885 is not in current human dataset.

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Rpo1-4
Fold Change:		1.16
P Value:		0.005
Note:		Differential expression between ethanol and water groups in amygdala

Dataset Information

Name:		18405950
Method:		Microarray
Tissue:		Nucleus accumbens and amygdala
Phenotype:		Ethanol self-administration, alcohol-preferring
Publication:		Rodd et al. Pharmacol Biochem Behav. (2008) Differential gene expression in the nucleus accumbens with ethanol self-administration in inbred alcohol-preferring rats. PubMed
Summary:		The current study examined the effects of operant ethanol (EtOH) self-administration on gene expression kin the nucleus accumbens (ACB) and amygdala (AMYG) of inbred alcohol-preferring (iP) rats. Rats self-trained on a standard two-lever operant paradigm to administer either water-water, EtOH (15% v/v)-water, or saccharin (SAC; 0.0125% g/v)-water. For the ACB, there were 513 significant differences at the p < 0.01 level in named genes: 55 between SAC and water; 215 between EtOH and water, and 243 between EtOH and SAC. In the case of the AMYG (p < 0.01), there were 48 between SAC and water, 23 between EtOH and water, and 63 between EtOH and SAC group.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_031772.1	NP_113960.1	NC_005103.2 range: 105187425..105251390

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005736	DNA-directed RNA polymerase I complex	Cellular Component	ISS
GO:0005634	nucleus	Cellular Component	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0008270	zinc ion binding	Molecular Function	IEA
GO:0000287	magnesium ion binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	ISS
GO:0003899	DNA-directed RNA polymerase activity	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0016779	nucleotidyltransferase activity	Molecular Function	IEA
GO:0006350	transcription	Biological Process	IEA