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Gene Information
Gene ID:83797
Symbol:Smarcd1
Full Name:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Alias:AA407987|Baf60a|D15Kz1
Organism:Mus musculus (Mouse)
Chromosome:15
Genetic Location:15 F1|15 56.8 cM
Physical Location:99532717-99544425 on NC_000081.5
Gene Type:protein-coding
Human Ortholog:GeneID: 6602    Symbol (Name): SMARCD1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1)
Ortholog Status:The human GeneID 6602 is not in current human dataset.
Gene in Ethanol Study Datasets
Gene Information
Original ID1:Smarcd1
Original ID2:M25773
Dataset Information
Name:15745951
Method:Microarray
Tissue:Nucleus accumbens, prefrontal cortex, and ventral tegmental area
Phenotype:Acute ethanol response
Publication:Kerns et al. J Neurosci. (2005) Ethanol-responsive brain region expression networks: implications for behavioral responses to acute ethanol in DBA/2J versus C57BL/6J mice. PubMed
Summary:The inbred mouse strains DBA/2J and C57BL/6J exhibit contrasting acute behavioral responses to ethanol. We used oligonucleotide microarrays and bioinformatics methods to characterize patterns of gene expression in three brain regions of the mesolimbic reward pathway of these strains. Expression profiling included examination of both differences in gene expression 4 h after acute ethanol (2 g/kg). Using a rigorous stepwise method for microarray analysis, we identified 307 ethanol-regulated genes in the nucleus accumbens, prefrontal cortex, and ventral tegmental area.
QTL Information
QTLPhenotypeChrPeak (cM)LODP ValueRangeStatusQTL Link
Lore5Alcohol-induced Loss of Righting Reflex15 18.8-61.7 (cM)4 SignificantPARC
Gene Refseq Sequence Annotation
mRNAProteinReference assembly Genomic
NM_031842.2NP_114030.2NC_000081.5 range: 99532717..99544425
Gene Ontology (GO) Annotation
GO IDGO TermCategoryEvidence (PubMed)
GO:0005634nucleusCellular ComponentIEA
GO:0016568chromatin modificationBiological ProcessIEA
Other Database Cross Links
NCBI Entrez Gene:83797
MGI:
Ensembl:ENSMUSG00000023018
dbSNP:Smarcd1
AceView:Smarcd1