ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

PPAP2C

Full Name:

phosphatidic acid phosphatase type 2C

Alias:

LPP2|PAP-2c|PAP2-g

Organism:

Homo sapiens (Human)

Chromosome:

19

Genetic Location:

19p13

Physical Location:

232042-242434 on NC_000019.8, complement

Gene Type:

protein-coding

Orthologs:

This gene has no orthologs in other dataset(s).

Gene in Ethanol Study Datasets

Gene Information

Original ID1:		Hs.465506
Note:		"Class II, down-regulated gene"

Dataset Information

Name:		16292326
Method:		Microarray
Tissue:		Frontal cortex
Phenotype:		Alcohol dependence (AD)/Alcohol abuse/Alcoholism
Publication:		Liu et al. Neuropsychopharmacology. (2006) Patterns of gene expression in the frontal cortex discriminate alcoholic from nonalcoholic individuals. PubMed
Summary:		In the present study, microarray analysis (approximately 47,000 elements) was performed on the superior frontal cortex of 27 individual human cases (14 well characterized alcoholics and 13 matched controls). A classification system was developed in which differentially expressed genes were divided into two classes. Class I genes were qualitatively different, that is, they were predominantly detected in one group but not the other. Multiple criteria were used to define Class II genes. First, only the genes detected on over 80% of the arrays in both groups. Class II were then defined as those consistently detected in both groups having absolute PLS loadings scores of >2.0 and t- probabilities of <0.05.

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_003712.2	NP_003703.1	NC_000019.8 range: 232042..242434, complement
NM_177526.1	NP_803545.1	NC_000019.8 range: 232042..242434, complement
NM_177543.1	NP_808211.1	NC_000019.8 range: 232042..242434, complement

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005829	cytosol	Cellular Component	EXP (9705349)
GO:0016020	membrane	Cellular Component	IEA
GO:0016020	membrane	Cellular Component	TAS (9607309)
GO:0016021	integral to membrane	Cellular Component	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0004721	phosphoprotein phosphatase activity	Molecular Function	TAS (9607309)
GO:0008195	phosphatidate phosphatase activity	Molecular Function	EXP (9705349)
GO:0008195	phosphatidate phosphatase activity	Molecular Function	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA

Other Database Cross Links

NCBI Entrez Gene:

HGNC:

Ensembl:

ENSG00000141934

MIM:

HPRD:

HuGE Navigator:

dbSNP:

GeneCard:

AceView: