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| TissGeneSummary for TFDP3 |
 Gene summary |
| Basic gene information | Gene symbol | TFDP3 |
| Gene name | transcription factor Dp family, member 3 | |
| Synonyms | CT30|DP4|HCA661 | |
| Cytomap | UCSC genome browser: Xq26.2 | |
| Type of gene | protein-coding | |
| RefGenes | NM_016521.2, | |
| Description | E2F-like proteincancer/testis antigen 30hepatocellular carcinoma-associated antigen 661transcription factor Dp family member 3 | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 300772 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000183434 | ||
| HPRD : 06623 | ||
| Vega : OTTHUMG00000022433 | ||
| Protein | UniProt: go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_TFDP3 | |
| BioGPS: 51270 | ||
| Pathway | NCI Pathway Interaction Database: TFDP3 | |
| KEGG: TFDP3 | ||
| REACTOME: TFDP3 | ||
| Pathway Commons: TFDP3 | ||
| Context | iHOP: TFDP3 | |
| ligand binding site mutation search in PubMed: TFDP3 | ||
| UCL Cancer Institute: TFDP3 | ||
| Assigned class in TissGDB* | C | |
| Included tissue-specific gene expression resources | HPA,GTEx | |
| Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | Testis | |
| Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | TGCT | |
| Reference showing the relevant tissue of TFDP3 | ||
| Description by TissGene annotations | ||
| * Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO term | PubMed ID | GO:0000082 | G1/S transition of mitotic cell cycle | 17062573 | GO:0006974 | cellular response to DNA damage stimulus | 20559320 | GO:0000082 | G1/S transition of mitotic cell cycle | 17062573 | GO:0006974 | cellular response to DNA damage stimulus | 20559320 |
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| TissGeneExp for TFDP3 |
| Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
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| Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
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| Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
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| Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
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| - Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
| Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
| LIHC | -1.172583474 | -2.336331474 | 1.163748 | 0.000666 | 0.001884313 |
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| TissGene-miRNA for TFDP3 |
| Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
| Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
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| TissGeneMut for TFDP3 |
| TissGeneSNV for TFDP3 |
| nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
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| Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
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| - nsSNVs sorted by frequency. |
| AAchange | Cancer type | # samples |
| p.E20Q | DLBC | 2 |
| p.G104* | UCEC | 1 |
| p.E386D | COAD | 1 |
| p.F280C | SKCM | 1 |
| p.R163S | LUAD | 1 |
| p.A148T | READ | 1 |
| p.Y155H | SKCM | 1 |
| p.A143P | OV | 1 |
| p.P71S | SKCM | 1 |
| p.L247Q | HNSC | 1 |
| p.E331* | UCEC | 1 |
| p.V133G | ACC | 1 |
| p.G299D | PRAD | 1 |
| p.S129F | SKCM | 1 |
| p.E240* | LUAD | 1 |
| p.D395N | UCEC | 1 |
| p.W352C | STAD | 1 |
| p.G377C | HNSC | 1 |
| p.V266I | CESC | 1 |
| p.R124S | LUSC | 1 |
| p.Q56K | ACC | 1 |
| p.ED403DY | BRCA | 1 |
| p.Q56L | SARC | 1 |
| p.V170L | LGG | 1 |
| p.P383T | LUAD | 1 |
| p.N349H | KIRC | 1 |
| p.I70S | SKCM | 1 |
| p.N101K | LUAD | 1 |
| p.A333T | COAD | 1 |
| p.S262N | UCEC | 1 |
| p.P65S | KIRC | 1 |
| p.P95L | SKCM | 1 |
| p.G372E | SKCM | 1 |
| p.V34M | LUAD | 1 |
| p.P327L | UCEC | 1 |
| p.Q195H | DLBC | 1 |
| p.K214Q | UCS | 1 |
| p.V29I | UCEC | 1 |
| p.L111Q | LUAD | 1 |
| p.D166N | SKCM | 1 |
| p.M116T | STAD | 1 |
| p.G377D | UCEC | 1 |
| p.G104R | SKCM | 1 |
| p.T121M | LGG | 1 |
| p.G74E | SKCM | 1 |
| p.A139V | PRAD | 1 |
| p.E105K | SKCM | 1 |
| p.R163C | UCEC | 1 |
| p.E152K | SKCM | 1 |
| p.K185R | LUAD | 1 |
| p.N192S | UVM | 1 |
| p.D273N | STAD | 1 |
| p.E12K | UCEC | 1 |
| p.V254M | UCEC | 1 |
| p.K281T | UCEC | 1 |
| p.R163C | ACC | 1 |
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| TissGeneCNV for TFDP3 |
| Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
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| TissGeneFusions for TFDP3 |
| Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
| Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
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| TissGeneNet for TFDP3 |
| Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
| BRCA (tumor) | BRCA (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| COAD (tumor) | COAD (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| HNSC (tumor) | HNSC (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| KICH (tumor) | KICH (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| KIRC (tumor) | KIRC (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| KIRP (tumor) | KIRP (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| LIHC (tumor) | LIHC (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| LUAD (tumor) | LUAD (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| LUSC (tumor) | LUSC (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| PRAD (tumor) | PRAD (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| STAD (tumor) | STAD (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| THCA (tumor) | THCA (normal) |
| TFDP3, SOCS3 (tumor) | TFDP3, SOCS3 (normal) |
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| TissGeneProg for TFDP3 |
| Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
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| Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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| Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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| Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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| TissGeneClin for TFDP3 |
| TissGeneDrug for TFDP3 |
| Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
| DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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| TissGeneDisease for TFDP3 |
| Disease information associated with TissGene (DisGeNet, 2016-06-01) |
| Disease ID | Disease name | # pubmeds | Source |
| umls:C0023903 | Liver neoplasms | 1 | BeFree |
| umls:C0153594 | Malignant neoplasm of testis | 1 | BeFree |
| umls:C2239176 | Liver carcinoma | 1 | BeFree |
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