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| TissGeneSummary for MS4A5 |
 Gene summary |
| Basic gene information | Gene symbol | MS4A5 |
| Gene name | membrane-spanning 4-domains, subfamily A, member 5 | |
| Synonyms | CD20-L2|CD20L2|TETM4 | |
| Cytomap | UCSC genome browser: 11q12 | |
| Type of gene | protein-coding | |
| RefGenes | NM_023945.2, | |
| Description | CD20 antigen-like 2membrane-spanning 4-domains subfamily A member 5testis-expressed transmembrane protein 4testis-expressed transmembrane-4 protein | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 606499 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000166930 | ||
| HPRD : 07578 | ||
| Vega : OTTHUMG00000167613 | ||
| Protein | UniProt: go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_MS4A5 | |
| BioGPS: 64232 | ||
| Pathway | NCI Pathway Interaction Database: MS4A5 | |
| KEGG: MS4A5 | ||
| REACTOME: MS4A5 | ||
| Pathway Commons: MS4A5 | ||
| Context | iHOP: MS4A5 | |
| ligand binding site mutation search in PubMed: MS4A5 | ||
| UCL Cancer Institute: MS4A5 | ||
| Assigned class in TissGDB* | B | |
| Included tissue-specific gene expression resources | HPA,TiGER,GTEx | |
| Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | Testis | |
| Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | TGCT | |
| Reference showing the relevant tissue of MS4A5 | ||
| Description by TissGene annotations | ||
| * Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO term | PubMed ID |
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| TissGeneExp for MS4A5 |
| Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
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| Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
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| Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
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| Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
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| - Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
| Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
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| TissGene-miRNA for MS4A5 |
| Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
| Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
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| TissGeneMut for MS4A5 |
| TissGeneSNV for MS4A5 |
| nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
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| Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
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| - nsSNVs sorted by frequency. |
| AAchange | Cancer type | # samples |
| p.V66G | KICH | 1 |
| p.G65E | SKCM | 1 |
| p.S34X | COAD | 1 |
| p.A128T | OV | 1 |
| p.T61N | LUAD | 1 |
| p.L134F | HNSC | 1 |
| p.F81L | LUAD | 1 |
| p.W90* | SKCM | 1 |
| p.F89S | LGG | 1 |
| p.L72M | LUAD | 1 |
| p.M120I | LUAD | 1 |
| p.S4R | LUAD | 1 |
| p.C189F | READ | 1 |
| p.R118Q | UCEC | 1 |
| p.L84I | UCEC | 1 |
| p.S181Y | PRAD | 1 |
| p.N144K | LUAD | 1 |
| p.P9L | READ | 1 |
| p.K48I | HNSC | 1 |
| p.I146V | BLCA | 1 |
| p.S8I | STAD | 1 |
| p.P88L | SKCM | 1 |
| p.D2N | HNSC | 1 |
| p.Q36E | BLCA | 1 |
| p.Q155K | OV | 1 |
| p.P80S | SKCM | 1 |
| p.S154C | PRAD | 1 |
| p.P75S | SKCM | 1 |
| p.S150P | COAD | 1 |
| p.K48E | LIHC | 1 |
| p.G51E | COAD | 1 |
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| TissGeneCNV for MS4A5 |
| Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
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| TissGeneFusions for MS4A5 |
| Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
| Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
| Chimerdb3.0 | FusionScan | BRCA | TCGA-B6-A0IG-01A | FAM111B-MS4A5 | In-Frame | chr11:58877179 | chr11:60198268 |
| TCGAfusionPortal | PRADA | BRCA | TCGA-B6-A0IG-01A | FAM111B-MS4A5 | In-frame | Chr11:58877179 | Chr11:60198269 |
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| TissGeneNet for MS4A5 |
| Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
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| TissGeneProg for MS4A5 |
| Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
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| Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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| Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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| Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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| TissGeneClin for MS4A5 |
| TissGeneDrug for MS4A5 |
| Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
| DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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| TissGeneDisease for MS4A5 |
| Disease information associated with TissGene (DisGeNet, 2016-06-01) |
| Disease ID | Disease name | # pubmeds | Source |
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