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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for ABCB6
check button Gene summary
Basic gene informationGene symbolABCB6
Gene nameATP-binding cassette, sub-family B (MDR/TAP), member 6 (Langereis blood group)
SynonymsABC|ABC14|DUH3|LAN|MCOPCB7|MTABC3|PRP|umat
CytomapUCSC genome browser: 2q36
Type of geneprotein-coding
RefGenesNM_005689.2,
DescriptionATP-binding cassette half-transporterATP-binding cassette sub-family B member 6, mitochondrialP-glycoprotein-related proteinmitochondrial ABC transporter 3mt-ABC transporter 3ubiquitously-expressed mammalian ABC half transporter
Modification date20141207
dbXrefs MIM : 605452
HGNC : HGNC
Ensembl : ENSG00000115657
HPRD : 09261
Vega : OTTHUMG00000133131
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_ABCB6
BioGPS: 10058
PathwayNCI Pathway Interaction Database: ABCB6
KEGG: ABCB6
REACTOME: ABCB6
Pathway Commons: ABCB6
ContextiHOP: ABCB6
ligand binding site mutation search in PubMed: ABCB6
UCL Cancer Institute: ABCB6
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)OvaryTestis
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)OVTGCT
Reference showing the relevant tissue of ABCB6
Description by TissGene annotationsTissgsLTS
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0006779porphyrin-containing compound biosynthetic process17006453
GO:0006810transport10837493
GO:0015886heme transport17661442
GO:0006779porphyrin-containing compound biosynthetic process17006453
GO:0006810transport10837493
GO:0015886heme transport17661442


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TissGeneExp for ABCB6

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KICH-1.793367615-0.135851615-1.6575162.59E-122.81E-11
LUAD0.83022473-0.610075271.44032.07E-152.22E-14
KIRC1.4433421630.0534102191.3899319442.71E-202.21E-19
KIRP1.422880010.3675393851.0553406252.04E-071.18E-06
LUSC1.434427131-0.421723851.856150981.15E-171.00E-16


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TissGene-miRNA for ABCB6

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for ABCB6
TissGeneSNV for ABCB6

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.S357*BRCA1
p.S493LLUSC1
p.G270RUCEC1
p.W304RPRAD1
p.D224YBRCA1
p.V735ILUSC1
p.R344WPAAD1
p.A756VCESC1
p.D694YLIHC1
p.R584HESCA1
p.W189*UCEC1
p.V788LKIRP1
p.I403VLIHC1
p.F565LSTAD1
p.R603WPAAD1
p.P670SUCEC1
p.R477*HNSC1
p.F409CSKCM1
p.R477*SKCM1
p.R336WSTAD1
p.G816EUCEC1
p.N545SHNSC1
p.V609MESCA1
p.K732RBLCA1
p.T740IBLCA1
p.V609LLUAD1
p.W822*UCEC1
p.R634CUCEC1
p.L88QESCA1
p.V595MREAD1
p.A517TSTAD1
p.R688HSTAD1
p.T679IUCEC1
p.L636VLUAD1
p.Y214CLUAD1
p.I70LLUSC1
p.S490LUCEC1
p.V796ISTAD1
p.A756VREAD1
p.V45MESCA1
p.F311LESCA1
p.Y536HSTAD1
p.V689APAAD1
p.R584HREAD1
p.V796ICESC1
p.W304*HNSC1
p.A373VLIHC1
p.E9*BLCA1
p.R338*UCEC1
p.A57SHNSC1
p.T549ACOAD1
p.S661FSKCM1
p.K313NKIRP1
p.R723LKIRP1
p.R375WHNSC1
p.D566HBLCA1
p.Y286DUCEC1
p.W189CESCA1
p.E472KUCEC1
p.R634HUCS1
p.R330HUCEC1
p.G367EGBM1
p.C268XACC1
p.N761KKIRC1
p.R375WUCEC1
p.D653HHNSC1
p.I140SSKCM1
p.L662PKIRP1


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TissGeneCNV for ABCB6

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for ABCB6

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNAR74223FSTL1-ABCB6chr3:120113427chr2:220084872
Chimerdb3.0ChiTaRsNABE378883ABCB6-ABCB6chr2:220084267chr2:220084102


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TissGeneNet for ABCB6

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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COAD (tumor)COAD (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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HNSC (tumor)HNSC (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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KICH (tumor)KICH (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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KIRC (tumor)KIRC (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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KIRP (tumor)KIRP (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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LIHC (tumor)LIHC (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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LUAD (tumor)LUAD (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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LUSC (tumor)LUSC (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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PRAD (tumor)PRAD (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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STAD (tumor)STAD (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
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THCA (tumor)THCA (normal)
ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (tumor)ABCB6, TSG101, UBC, TOLLIP, PIK3R3 (normal)
bullet pointbullet point


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TissGeneProg for ABCB6

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for ABCB6
TissGeneDrug for ABCB6

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for ABCB6

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0162534Prion Diseases19BeFree
umls:C0079744Diffuse Large B-Cell Lymphoma18BeFree
umls:C0027819Neuroblastoma15BeFree
umls:C0700095Central neuroblastoma15BeFree
umls:C0019693HIV Infections12BeFree
umls:C0006142Malignant neoplasm of breast9BeFree
umls:C0010674Cystic Fibrosis9BeFree
umls:C0678222Breast Carcinoma8BeFree
umls:C0029925Ovarian Carcinoma6BeFree
umls:C0162309Adrenoleukodystrophy6BeFree
umls:C2239176Liver carcinoma6BeFree
umls:C0022336Creutzfeldt-Jakob disease5BeFree
umls:C0033847Pseudoxanthoma Elasticum5BeFree
umls:C0014544Epilepsy4BeFree
umls:C0017495Gerstmann-Straussler-Scheinker Disease4BeFree
umls:C0019158Hepatitis4BeFree
umls:C0019159Hepatitis A4BeFree
umls:C0023473Myeloid Leukemia, Chronic4BeFree
umls:C1140680Malignant neoplasm of ovary4BeFree
umls:C3809394DYSCHROMATOSIS UNIVERSALIS HEREDITARIA 34CLINVAR,UNIPROT
umls:C0009363Congenital ocular coloboma (disorder)3BeFree,ORPHANET
umls:C0014175Endometriosis3BeFree
umls:C0270612Leukoencephalopathies3BeFree
umls:C2930995Dyschromatosis universalis hereditaria3BeFree
umls:C0002395Alzheimer's Disease2BeFree
umls:C0004364Autoimmune Diseases2BeFree
umls:C0007102Malignant tumor of colon2BeFree
umls:C0008479Chondrosarcoma2BeFree
umls:C0011265Presenile dementia2BeFree
umls:C0011334Dental caries2BeFree
umls:C0011615Dermatitis, Atopic2BeFree
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent2BeFree
umls:C0013421Dystonia2BeFree
umls:C0013595Eczema2BeFree
umls:C0017638Glioma2BeFree
umls:C0019163Hepatitis B2BeFree
umls:C0023418leukemia2BeFree
umls:C0023895Liver diseases2BeFree
umls:C0023903Liver neoplasms2BeFree
umls:C0024530Malaria2BeFree
umls:C0024623Malignant neoplasm of stomach2BeFree
umls:C0025202melanoma2BeFree
umls:C0027627Neoplasm Metastasis2BeFree
umls:C0036572Seizures2BeFree
umls:C0038358Gastric ulcer2BeFree
umls:C0085584Encephalopathies2BeFree
umls:C0242379Malignant neoplasm of lung2BeFree
umls:C0333519Caries (morphologic abnormality)2BeFree
umls:C0376329New Variant Creutzfeldt-Jakob Disease2BeFree
umls:C0393593Dystonia Disorders2BeFree
umls:C0497327Dementia2BeFree
umls:C0524620Metabolic Syndrome X2BeFree
umls:C0677886Epithelial ovarian cancer2BeFree
umls:C0699790Colon Carcinoma2BeFree
umls:C0699791Stomach Carcinoma2BeFree
umls:C0750929Arnold-Chiari Malformation, Type I2BeFree
umls:C1857941Brooke-Spiegler syndrome2BeFree
umls:C0001849AIDS Dementia Complex1BeFree
umls:C0003076Aniridia1BeFree
umls:C0003850Arteriosclerosis1BeFree
umls:C0004153Atherosclerosis1BeFree
umls:C0005684Malignant neoplasm of urinary bladder1BeFree
umls:C0006118Brain Neoplasms1BeFree
umls:C0007137Squamous cell carcinoma1BeFree
umls:C0007570Celiac Disease1BeFree
umls:C0007682CNS disorder1BeFree
umls:C0009324Ulcerative Colitis1BeFree
umls:C0009404Colorectal Neoplasms1CTD_human
umls:C0012546Diphtheria1BeFree
umls:C0017154Gastritis, Atrophic1BeFree
umls:C0019196Hepatitis C1BeFree
umls:C0021400Influenza1BeFree
umls:C0022602Actinic keratosis1BeFree
umls:C0023440Acute Erythroblastic Leukemia1BeFree
umls:C0023443Hairy Cell Leukemia1BeFree
umls:C0023531Leukoplakia1BeFree
umls:C0023890Liver Cirrhosis1BeFree
umls:C0024299Lymphoma1BeFree
umls:C0024301Lymphoma, Follicular1BeFree
umls:C0026010Microphthalmos1BeFree
umls:C0026703Mucopolysaccharidoses1BeFree
umls:C0026847Spinal Muscular Atrophy1BeFree
umls:C0026918Mycobacterium Infections1BeFree
umls:C0030920Peptic Ulcer1BeFree
umls:C0032460Polycystic Ovary Syndrome1CTD_human
umls:C0032584polyps1BeFree
umls:C0039614Tetanus1BeFree
umls:C0085648Synovial Cyst1BeFree
umls:C0153633Malignant neoplasm of brain1BeFree
umls:C0153676Secondary malignant neoplasm of lung1BeFree
umls:C0206042Fatal Familial Insomnia1BeFree
umls:C0206708Cervical Intraepithelial Neoplasia1BeFree
umls:C0234458Dream disorder1BeFree
umls:C0238463Papillary thyroid carcinoma1BeFree
umls:C0239849Harlequin Fetus1BeFree
umls:C0242723Parasitemia1BeFree
umls:C0259782Telangiectatic osteosarcoma1BeFree
umls:C0262404Cerebellar degeneration1BeFree
umls:C0263641Epithelial hyperplasia of skin1BeFree
umls:C0279000Liver and Intrahepatic Biliary Tract Carcinoma1BeFree
umls:C0279543Philadelphia chromosome positive chronic myelogenous leukemia1BeFree
umls:C0280100Solid tumour1BeFree
umls:C0281361Adenocarcinoma of pancreas1BeFree
umls:C0338656Impaired cognition1BeFree
umls:C0339901Acute respiratory infections1BeFree
umls:C0345904Malignant neoplasm of liver1BeFree
umls:C0473583Nevus elasticus1BeFree
umls:C0524851Neurodegenerative Disorders1BeFree
umls:C0587248Costello syndrome (disorder)1BeFree
umls:C0596263Carcinogenesis1BeFree
umls:C0684249Carcinoma of lung1BeFree
umls:C0686353Muscular Dystrophies, Limb-Girdle1BeFree
umls:C0699885Carcinoma of bladder1BeFree
umls:C0729233Dissecting aneurysm of the thoracic aorta1BeFree
umls:C0740279Cerebellar atrophy1BeFree
umls:C0751254Creutzfeldt-Jakob Disease, Familial1BeFree
umls:C0878544Cardiomyopathies1BeFree
umls:C0917801Sleeplessness1BeFree
umls:C1096063Drug Resistant Epilepsy1BeFree
umls:C1258666Myxoid cyst1BeFree
umls:C1261473Sarcoma1BeFree
umls:C1274408Chronic plaque-like oral candidiasis1BeFree
umls:C1333978Hepatitis C Virus-Related Hepatocellular Carcinoma1BeFree
umls:C1335302Pancreatic Ductal Adenocarcinoma1BeFree
umls:C1623038Cirrhosis1BeFree
umls:C1704429Hypoalphalipoproteinemia, Familial1BeFree
umls:C1840264IMMUNE SUPPRESSION1BeFree
umls:C1852467Creutzfeldt-Jakob Disease, Sporadic1BeFree
umls:C1859372Calcification of Joints and Arteries1BeFree
umls:C2931838Familial HDL deficiency1BeFree
umls:C3281027MICROPHTHALMIA, ISOLATED, WITH COLOBOMA 71CLINVAR,UNIPROT
umls:C1306229Dyschromatosis universalis0ORPHANET
umls:C1836705Pseudohyperkalemia, Familial, 2, due to Red Cell Leak0CLINVAR,ORPHANET
umls:C3276339BLOOD GROUP, LANGEREIS SYSTEM0CLINVAR