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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for DLC1
check button Gene summary
Basic gene informationGene symbolDLC1
Gene nameDLC1 Rho GTPase activating protein
SynonymsARHGAP7|HP|STARD12|p122-RhoGAP
CytomapUCSC genome browser: 8p22
Type of geneprotein-coding
RefGenesNM_001164271.1,
NM_006094.4,NM_024767.3,NM_182643.2,
DescriptionRho-GTPase-activating protein 7START domain-containing protein 12StAR-related lipid transfer (START) domain containing 12deleted in liver cancer 1 proteindeleted in liver cancer 1 variant 2rho GTPase-activating protein 7rho-type GTPase-activating pr
Modification date20141207
dbXrefs MIM : 604258
HGNC : HGNC
Ensembl : ENSG00000164741
HPRD : 05035
Vega : OTTHUMG00000090825
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_DLC1
BioGPS: 10395
PathwayNCI Pathway Interaction Database: DLC1
KEGG: DLC1
REACTOME: DLC1
Pathway Commons: DLC1
ContextiHOP: DLC1
ligand binding site mutation search in PubMed: DLC1
UCL Cancer Institute: DLC1
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)LungSoft tissue
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)LUAD,LUSCSARC
Reference showing the relevant tissue of DLC1
Description by TissGene annotationsCancer gene
Have significant anti-correlated miRNA
TissgsLTS
Fused withTSGene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0006915apoptotic process17292327
GO:0006919activation of cysteine-type endopeptidase activity involved in apoptotic process17888903
GO:0008285negative regulation of cell proliferation12545165
GO:0030336negative regulation of cell migration17932950
GO:0032321positive regulation of Rho GTPase activity17932950
GO:0035307positive regulation of protein dephosphorylation17292327
GO:0051497negative regulation of stress fiber assembly17932950
GO:1900119positive regulation of execution phase of apoptosis17888903
GO:0006915apoptotic process17292327
GO:0006919activation of cysteine-type endopeptidase activity involved in apoptotic process17888903
GO:0008285negative regulation of cell proliferation12545165
GO:0030336negative regulation of cell migration17932950
GO:0032321positive regulation of Rho GTPase activity17932950
GO:0035307positive regulation of protein dephosphorylation17292327
GO:0051497negative regulation of stress fiber assembly17932950
GO:1900119positive regulation of execution phase of apoptosis17888903


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TissGeneExp for DLC1

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KICH1.3907668082.537450808-1.1466842.82E-058.21E-05
LIHC1.5062488082.843738808-1.337492.84E-147.79E-13
LUAD2.1991814974.728764256-2.5295827591.28E-245.04E-23
LUSC0.7228500234.710440219-3.9875901969.34E-314.48E-29
BRCA1.6588643163.242723966-1.5838596491.47E-291.88E-28
KIRP1.1316858082.362110808-1.2304251.42E-081.07E-07
BLCA0.5108213342.07843186-1.5676105260.0001340.001379704


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TissGene-miRNA for DLC1

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples
LUADhsa-miR-200b-3pMIMAT00003180.049-0.2660
ACChsa-miR-200b-3pMIMAT00003180.034-0.2778
ACChsa-miR-24-3pMIMAT00000800.036-0.2778
ACChsa-miR-200b-3pMIMAT00003180.034-0.2778
ACChsa-miR-24-3pMIMAT00000800.036-0.2778
ACChsa-miR-186-5pMIMAT00004560.024-0.378
ACChsa-miR-186-5pMIMAT00004560.024-0.378
ACChsa-let-7g-5pMIMAT00004140.01-0.3278
ACChsa-let-7g-5pMIMAT00004140.01-0.3278
LUADhsa-miR-429MIMAT00015360.0053-0.3660


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TissGeneMut for DLC1
TissGeneSNV for DLC1

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.S741TBLCA4
p.R338CUCEC2
p.S741TTGCT2
p.S620FSKCM2
p.S741TLGG2
p.S741TPRAD2
p.R54CUCEC2
p.G143ESKCM2
p.V791MCOAD2
p.V940ISKCM1
p.T420MTHCA1
p.D561NSKCM1
p.H66NBLCA1
p.R1425QUCEC1
p.D89YLUAD1
p.R1384CBLCA1
p.Q280XCOAD1
p.R1100XCOAD1
p.G293DBRCA1
p.T1270STHCA1
p.S741TLIHC1
p.V183GSTAD1
p.C1442FCOAD1
p.D1327ESKCM1
p.E657KREAD1
p.Q1097XCOAD1
p.H1422YBLCA1
p.V1215IACC1
p.D84NDLBC1
p.M1290ILUSC1
p.S830LHNSC1
p.R388QSTAD1
p.A607VCOAD1
p.R410LLUAD1
p.S160YBLCA1
p.G987VLUAD1
p.H848YSKCM1
p.R347*UCEC1
p.G400ELGG1
p.R595HCOAD1
p.C1328GSKCM1
p.V175ILUSC1
p.S741TUCS1
p.R1086CLAML1
p.R410*GBM1
p.S395LSKCM1
p.R730QHNSC1
p.P152SUCEC1
p.E552QSTAD1
p.S453*BRCA1
p.R410QCOAD1
p.G293SSKCM1
p.A1274GSTAD1
p.R410*LUAD1
p.D858NOV1
p.Q441*SKCM1
p.W10LLUAD1
p.C1473SCOAD1
p.K339NESCA1
p.N304TSTAD1
p.D89ELUAD1
p.G655CSTAD1
p.R918WPAAD1
p.F1333LUCEC1
p.H998RUCEC1
p.D123NREAD1
p.S1318LBLCA1
p.P604SSKCM1
p.S1499YHNSC1
p.S186YLGG1
p.T760MESCA1
p.H519NESCA1
p.Q1413RGBM1
p.P282SSKCM1
p.P947LSKCM1
p.G638DSTAD1
p.R1294CSTAD1
p.S1349XESCA1
p.P815SSTAD1
p.A232TPRAD1
p.R1155*UCEC1
p.M1TSTAD1
p.R410XREAD1
p.H109YLUAD1
p.S414YUCEC1
p.A401TUCEC1
p.A460TPRAD1
p.M774KLUSC1
p.A718TBLCA1
p.V36ABLCA1
p.K182NLUSC1
p.R866CLUAD1
p.L1018PTHCA1
p.L174QHNSC1
p.L98IHNSC1
p.Q441XSKCM1
p.K1261NBLCA1
p.T213NUCEC1
p.G931RESCA1
p.A173EREAD1
p.V1227MCOAD1
p.S688TBLCA1
p.R1453CUCEC1
p.H389LSKCM1
p.S1074NLUAD1
p.P961HBRCA1
p.R670PLGG1
p.Q155KLUAD1
p.S160FSKCM1
p.T1163MLGG1
p.L1386PSTAD1
p.E1361KSTAD1
p.S741TLUAD1
p.S544RPCPG1
p.G1117ESKCM1
p.D1145HBLCA1
p.R54CSTAD1
p.G464SSTAD1
p.S1244FSKCM1
p.K455NLUAD1
p.A30SSTAD1
p.A990SUCEC1
p.R235QCESC1
p.E587KBLCA1
p.P435LKIRC1
p.Q328RDLBC1
p.F637LESCA1
p.R588HSTAD1
p.R1182HUCEC1
p.P564SSKCM1
p.S248ISTAD1
p.T1163MCOAD1
p.D525EHNSC1
p.S764RSTAD1
p.E590DSTAD1
p.R1384CREAD1
p.S289PLGG1
p.S300*CESC1
p.R1384CPAAD1
p.D932NLUSC1
p.G696RHNSC1
p.S741TSKCM1
p.D1148NLUAD1
p.R994MLUAD1
p.C284YSTAD1
p.I202MSKCM1
p.I497MHNSC1
p.V1146LLIHC1
p.P643SPAAD1
p.G143RSKCM1
p.V110ALIHC1
p.K465NKIRC1
p.E447KSKCM1
p.G165RLUAD1
p.L191PSKCM1
p.A232TLGG1
p.S1167LCOAD1
p.F458LESCA1
p.R54CLAML1
p.S650NUCEC1
p.P241HLUAD1
p.A614TBLCA1
p.D1398GBLCA1
p.L40MLUAD1
p.I1190FSTAD1
p.T1298ASTAD1
p.D185GCOAD1
p.W17*ESCA1
p.A229VKIRC1
p.E256KBLCA1
p.P758LLIHC1
p.V1084MUCEC1
p.A718TCOAD1
p.H490YSKCM1
p.S593FSKCM1
p.P74SSKCM1
p.D893ESTAD1
p.E905ASTAD1
p.Q441ELUAD1
p.V882MSKCM1
p.R1384CUCEC1
p.Q367KLUSC1
p.Q1202HKIRC1
p.S682NUCEC1
p.E706KHNSC1
p.L822FSTAD1
p.D1195ELUAD1
p.A102DBRCA1
p.V1118IGBM1
p.W17XESCA1
p.E1379QESCA1
p.C1328FBRCA1
p.T755MSTAD1
p.D239NHNSC1
p.S679CHNSC1
p.R27HMESO1
p.T738SBLCA1
p.N855KHNSC1
p.K182NESCA1
p.K1510TUCEC1
p.P947STHCA1
p.D185VESCA1
p.N725DSTAD1
p.M78VSKCM1
p.R351WLIHC1
p.C1328FESCA1
p.R1121QCOAD1
p.E715GSTAD1
p.P1364LSKCM1
p.L459FCESC1
p.A1278GSTAD1
p.S1296YCESC1
p.E180KSKCM1
p.V511MESCA1
p.E222KLUAD1
p.L61PSTAD1
p.G19VLUAD1
p.E1288KLUSC1
p.D1108ECOAD1
p.R798HCOAD1
p.Q1184RCESC1
p.D185GBRCA1
p.E1403KCOAD1
p.M355IREAD1
p.Q158EUCEC1
p.V1058LKIRC1
p.V624IHNSC1
p.K1523ESKCM1
p.P241HTHYM1
p.D63NCESC1
p.K1498*LUAD1
p.I516MSTAD1
p.T272IHNSC1
p.S1355FSKCM1
p.F1515LLUAD1
p.A1057VCOAD1
p.G987ABRCA1
p.H519DLUSC1
p.S828FSKCM1
p.R984SHNSC1
p.R617QUCEC1
p.E460KSKCM1
p.T420RKIRP1
p.L506VCOAD1
p.R1198QCOAD1
p.A686SCOAD1
p.R27HSTAD1
p.S741TKIRP1
p.M703ILUAD1
p.N1295DSTAD1
p.P1364SSKCM1
p.A290SLUAD1
p.R595CHNSC1
p.K675RPAAD1
p.N972DSTAD1


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TissGeneCNV for DLC1

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for DLC1

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNACB999461AHNAK-DLC1chr11:62283808chr8:12941409
Chimerdb3.0ChiTaRsNAT78001DLC1-DLC1chr8:13356639chr8:13251070
Chimerdb3.0ChiTaRsNACR738829RPL22-DLC1chr1:6245697chr8:12940882
Chimerdb3.0ChiTaRsNABF358436PPP3CC-DLC1chr8:22392911chr8:12959711
Chimerdb3.0FusionScanUCECTCGA-D1-A3JQ-01AZBTB17-DLC15'UTR-5'UTRchr1:16299533chr8:12973166
TCGAfusionPortalPRADABRCATCGA-AR-A1AN-01ACHD9-DLC1Out-of-frameChr16:53308214Chr8:13162811


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TissGeneNet for DLC1

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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COAD (tumor)COAD (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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HNSC (tumor)HNSC (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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KICH (tumor)KICH (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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KIRC (tumor)KIRC (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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KIRP (tumor)KIRP (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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LIHC (tumor)LIHC (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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LUAD (tumor)LUAD (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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LUSC (tumor)LUSC (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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PRAD (tumor)PRAD (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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STAD (tumor)STAD (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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THCA (tumor)THCA (normal)
DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (tumor)DLC1, SP1, AKT1, SP3, RASA1, S100A10, TNS3, WWC1 (normal)
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TissGeneProg for DLC1

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for DLC1
TissGeneDrug for DLC1

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for DLC1

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C2239176Liver carcinoma21BeFree,GAD,LHGDN
umls:C0596263Carcinogenesis16BeFree
umls:C0279000Liver and Intrahepatic Biliary Tract Carcinoma14BeFree
umls:C0345904Malignant neoplasm of liver14BeFree
umls:C0678222Breast Carcinoma12BeFree
umls:C0006142Malignant neoplasm of breast11BeFree
umls:C0027627Neoplasm Metastasis11BeFree
umls:C0007102Malignant tumor of colon7BeFree
umls:C0023903Liver neoplasms7BeFree,GAD,LHGDN
umls:C0699790Colon Carcinoma7BeFree,CLINVAR
umls:C1512409Hepatocarcinogenesis6BeFree
umls:C0178874Tumor Progression5BeFree
umls:C0376358Malignant neoplasm of prostate5BeFree
umls:C0600139Prostate carcinoma5BeFree
umls:C1458155Mammary Neoplasms5BeFree,LHGDN
umls:C0007131Non-Small Cell Lung Carcinoma4BeFree
umls:C0686619Secondary malignant neoplasm of lymph node4BeFree
umls:C2931822Nasopharyngeal carcinoma4BeFree
umls:C0024121Lung Neoplasms3BeFree,LHGDN
umls:C0024299Lymphoma3BeFree,LHGDN
umls:C0024305Lymphoma, Non-Hodgkin3BeFree,LHGDN
umls:C0024623Malignant neoplasm of stomach3BeFree
umls:C0026764Multiple Myeloma3BeFree
umls:C0033578Prostatic Neoplasms3BeFree
umls:C0699791Stomach Carcinoma3BeFree
umls:C0007134Renal Cell Carcinoma2BeFree
umls:C0009402Colorectal Carcinoma2BeFree
umls:C0029925Ovarian Carcinoma2BeFree
umls:C0038356Stomach Neoplasms2CTD_human,LHGDN
umls:C0153676Secondary malignant neoplasm of lung2BeFree
umls:C0242379Malignant neoplasm of lung2BeFree
umls:C0280100Solid tumour2BeFree
umls:C0684249Carcinoma of lung2BeFree
umls:C0919267ovarian neoplasm2BeFree,CTD_human
umls:C1527249Colorectal Cancer2BeFree
umls:C0009375Colonic Neoplasms1LHGDN
umls:C0010068Coronary heart disease1BeFree
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent1GAD
umls:C0019163Hepatitis B1BeFree
umls:C0023462Acute Megakaryocytic Leukemias1BeFree
umls:C0025149Medulloblastoma1BeFree
umls:C0025286Meningioma1BeFree,LHGDN
umls:C0036341Schizophrenia1BeFree
umls:C0040336Tobacco Use Disorder1GAD
umls:C0152018Esophageal carcinoma1BeFree
umls:C0152021Congenital heart disease1BeFree
umls:C0153452Malignant neoplasm of gallbladder1BeFree
umls:C0153690Secondary malignant neoplasm of bone1BeFree
umls:C0155826Chronic nasopharyngitis1BeFree
umls:C0235782Gallbladder Carcinoma1BeFree
umls:C0238339Hereditary pancreatitis1BeFree
umls:C0278678Metastatic Renal Cell Cancer1BeFree
umls:C0376545Hematologic Neoplasms1BeFree
umls:C0553723Squamous cell carcinoma of skin1BeFree
umls:C0677886Epithelial ovarian cancer1BeFree
umls:C0936223Metastatic Prostate Carcinoma1BeFree
umls:C1140680Malignant neoplasm of ovary1BeFree
umls:C1168401Squamous cell carcinoma of the head and neck1BeFree
umls:C1335302Pancreatic Ductal Adenocarcinoma1BeFree
umls:C1336538Supratentorial Primitive Neuroectodermal Tumor1BeFree
umls:C1516170Cancer Cell Growth1BeFree
umls:C1559271Non-Malignant Ascites Adverse Event1BeFree
umls:C1704272Benign Prostatic Hyperplasia1BeFree
umls:C1762616Meningioma, benign, no ICD-O subtype1BeFree