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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for ADAMTS13
check button Gene summary
Basic gene informationGene symbolADAMTS13
Gene nameADAM metallopeptidase with thrombospondin type 1 motif, 13
SynonymsADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP
CytomapUCSC genome browser: 9q34
Type of geneprotein-coding
RefGenesNM_139025.4,
NM_139026.4,NM_139027.4,NR_024514.2,NM_139028.2,
DescriptionA disintegrin and metalloproteinase with thrombospondin motifs 13a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13vWF-cleaving proteasevon Willebrand factor-cleaving protease
Modification date20141207
dbXrefs MIM : 604134
HGNC : HGNC
Ensembl : ENSG00000160323
HPRD : 04994
Vega : OTTHUMG00000020876
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_ADAMTS13
BioGPS: 11093
PathwayNCI Pathway Interaction Database: ADAMTS13
KEGG: ADAMTS13
REACTOME: ADAMTS13
Pathway Commons: ADAMTS13
ContextiHOP: ADAMTS13
ligand binding site mutation search in PubMed: ADAMTS13
UCL Cancer Institute: ADAMTS13
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)ColonLiverTestis
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)COADLIHCTGCT
Reference showing the relevant tissue of ADAMTS13
Description by TissGene annotationsCancer gene
TissgsLTS
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0006508proteolysis11535495
GO:0043171peptide catabolic process11535495
GO:0006508proteolysis11535495
GO:0043171peptide catabolic process11535495


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TissGeneExp for ADAMTS13

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LIHC0.9281345454.520008545-3.5918741.33E-265.91E-24
KIRC-1.164086178-0.1069084-1.0571777785.30E-122.12E-11


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TissGene-miRNA for ADAMTS13

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for ADAMTS13
TissGeneSNV for ADAMTS13

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.R59HUCEC1
p.A382VPAAD1
p.R1165WCOAD1
p.V605LKIRP1
p.A876TSTAD1
p.T577NBLCA1
p.R660WBRCA1
p.V175IUCEC1
p.L574PLIHC1
p.R409QSKCM1
p.P1171LLGG1
p.V964MBRCA1
p.P856SSKCM1
p.M609IBLCA1
p.E851*UCEC1
p.L915MCOAD1
p.A685STHYM1
p.G200SBRCA1
p.R1123HREAD1
p.R125WESCA1
p.N434SSKCM1
p.Q1004*SKCM1
p.T874ALUAD1
p.E930DSKCM1
p.R768LLIHC1
p.R1000CSKCM1
p.Y1405HUCEC1
p.A481GLUAD1
p.D117NLUAD1
p.V1412ICOAD1
p.G1403SSTAD1
p.P694LSKCM1
p.P1119RCOAD1
p.R636QBLCA1
p.R312IUCEC1
p.M913LPRAD1
p.A900VCOAD1
p.S1233CBLCA1
p.H485RLIHC1
p.R1094CSTAD1
p.A596VSTAD1
p.P1333SBLCA1
p.C1192RUCEC1
p.R488QSTAD1
p.R498HOV1
p.L1100ICOAD1
p.R629TBLCA1
p.S150FSKCM1
p.D551GESCA1
p.A307VUCEC1
p.L1068FSTAD1
p.A1348TSTAD1
p.F592LSTAD1
p.E1231DBLCA1
p.G1045CSKCM1
p.M1205TSTAD1
p.Y570*LUSC1
p.A1152TCOAD1
p.R102CCOAD1
p.R1219QUCEC1
p.G512CTHYM1
p.T1319PSKCM1
p.R1000CBLCA1
p.R972QHNSC1
p.S1170PDLBC1
p.W1379RLIHC1
p.R1000HSKCM1
p.V1065AUCEC1
p.R1228CUCEC1
p.Q1103XSKCM1
p.P883QESCA1
p.R1251MESCA1
p.G1347SSKCM1
p.C1084GSTAD1
p.E634KUCS1
p.S1027IESCA1
p.S292FSKCM1
p.Q1103*SKCM1
p.W365_spliceLUSC1
p.G1101EHNSC1
p.W1421CUCEC1
p.A1335GLUAD1
p.P671QPRAD1
p.V964MUCEC1
p.P881LTHYM1
p.E663KCOAD1
p.P939SCOAD1
p.C548YACC1
p.D217HLUAD1
p.H870LLUAD1
p.A1053VCOAD1
p.R1402QPRAD1
p.R644HUCEC1
p.R498CTHYM1
p.G1349VLUAD1
p.G419RESCA1
p.R1247QUCEC1
p.R73STHYM1
p.T135IKIRC1
p.L1283RSKCM1
p.S1381LHNSC1
p.R1361WLGG1
p.L762MSTAD1
p.Q1419*BLCA1
p.D217NMESO1
p.P846SLIHC1
p.P734RESCA1
p.A422TPRAD1
p.R514WSKCM1
p.R954PKIRC1
p.R765QCESC1
p.E740KSKCM1
p.S1064NSKCM1
p.R683PLUSC1
p.Q1046HSTAD1
p.P1003LCOAD1
p.P741LSKCM1
p.D500NGBM1
p.W1250*SKCM1
p.P557SOV1
p.M1346ISKCM1
p.S1085AUCEC1
p.C754YLIHC1
p.N189YBRCA1
p.I1339VBRCA1
p.A1070TSTAD1
p.D182NLUAD1
p.D1043NSTAD1
p.A1335VPRAD1
p.Q448ECOAD1
p.R1123CCOAD1
p.R125WSKCM1
p.P841SSKCM1
p.A321TCOAD1
p.Q1105KSTAD1
p.V906ICESC1
p.R1176QCOAD1
p.G861RSTAD1
p.R125WUCEC1
p.W283*BLCA1


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TissGeneCNV for ADAMTS13

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for ADAMTS13

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
TCGAfusionPortalPRADABRCATCGA-AC-A2BM-01AADAMTS13-LHX2Out-of-frameChr9:136315086Chr9:126794699
TCGAfusionPortalPRADABRCATCGA-B6-A0I9-01AFSD1L-ADAMTS13Out-of-frameChr9:108210516Chr9:136313720


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TissGeneNet for ADAMTS13

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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COAD (tumor)COAD (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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HNSC (tumor)HNSC (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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KICH (tumor)KICH (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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KIRC (tumor)KIRC (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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KIRP (tumor)KIRP (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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LIHC (tumor)LIHC (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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LUAD (tumor)LUAD (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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LUSC (tumor)LUSC (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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PRAD (tumor)PRAD (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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STAD (tumor)STAD (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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THCA (tumor)THCA (normal)
ADAMTS13, VWF, F8 (tumor)ADAMTS13, VWF, F8 (normal)
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TissGeneProg for ADAMTS13

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for ADAMTS13
TissGeneDrug for ADAMTS13

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for ADAMTS13

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0034155Purpura, Thrombotic Thrombocytopenic151BeFree,CTD_human,GAD,LHGDN
umls:C1268935Congenital Thrombotic Thrombocytopenic Purpura51BeFree,CLINVAR,GAD,MGD,ORPHANET,UNIPROT
umls:C2717961Thrombotic Microangiopathies32BeFree,CTD_human
umls:C0019061Hemolytic-Uremic Syndrome11BeFree,LHGDN
umls:C2584778Thrombotic thrombocytopenic purpura, acquired11BeFree
umls:C0162429Malnutrition9BeFree
umls:C0302810Uremia syndrome9BeFree
umls:C2931788Atypical Hemolytic Uremic Syndrome7BeFree
umls:C0038454Cerebrovascular accident6BeFree,GAD
umls:C0042974von Willebrand Disease5BeFree,LHGDN
umls:C0151942Arterial thrombosis5BeFree,GAD
umls:C0243026Sepsis5BeFree,LHGDN
umls:C0857305Thrombocytopenic purpura5BeFree
umls:C0027051Myocardial Infarction4BeFree,LHGDN
umls:C0035078Kidney Failure4BeFree
umls:C0036690Septicemia4BeFree
umls:C0040034Thrombocytopenia4LHGDN
umls:C0006142Malignant neoplasm of breast3BeFree
umls:C0007222Cardiovascular Diseases3BeFree,GAD
umls:C0010068Coronary heart disease3BeFree,GAD
umls:C0019693HIV Infections3BeFree
umls:C0028754Obesity3BeFree
umls:C0040053Thrombosis3GAD,LHGDN
umls:C0678222Breast Carcinoma3BeFree
umls:C1264039von Willebrand Disease, Type 13BeFree
umls:C0001314Acute Disease2BeFree
umls:C0002871Anemia2BeFree
umls:C0002878Anemia, Hemolytic2BeFree,LHGDN
umls:C0004364Autoimmune Diseases2BeFree
umls:C0006625Cachexia2BeFree
umls:C0010054Coronary Arteriosclerosis2BeFree
umls:C0012739Disseminated Intravascular Coagulation2BeFree,LHGDN
umls:C0022660Kidney Failure, Acute2BeFree
umls:C0022661Kidney Failure, Chronic2BeFree
umls:C0023890Liver Cirrhosis2LHGDN
umls:C0024530Malaria2BeFree
umls:C0024535Malaria, Falciparum2BeFree
umls:C0034150Purpura2LHGDN
umls:C0149871Deep Vein Thrombosis2BeFree
umls:C0155765Disease of capillaries2BeFree
umls:C0221021Microangiopathic hemolytic anemia2BeFree
umls:C0584960Factor V Leiden mutation2BeFree
umls:C0853879Invasive breast carcinoma2BeFree
umls:C0948008Ischemic stroke2BeFree,GAD
umls:C1282971von Willebrand Disease, Type 2B2BeFree
umls:C1561643Chronic Kidney Diseases2BeFree
umls:C1565489Renal Insufficiency2BeFree
umls:C1956258Familial Thrombotic Thrombocytopenic Purpura2BeFree
umls:C1956346Coronary Artery Disease2BeFree
umls:C2239176Liver carcinoma2BeFree
umls:C3272363Ischemic Cerebrovascular Accident2BeFree
umls:C3273254Arterionephrosclerosis2BeFree
umls:C0000768Congenital Abnormality1BeFree
umls:C0001430Adenoma1BeFree
umls:C0001973Alcoholic Intoxication, Chronic1GAD
umls:C0003175Anthrax disease1LHGDN
umls:C0003864Arthritis1BeFree
umls:C0004114Astrocytoma1BeFree
umls:C0004623Bacterial Infections1BeFree
umls:C0006118Brain Neoplasms1LHGDN
umls:C0007134Renal Cell Carcinoma1BeFree
umls:C0007785Cerebral Infarction1BeFree
umls:C0007786Brain Ischemia1GAD
umls:C0008370Cholestasis1RGD
umls:C0009375Colonic Neoplasms1LHGDN
umls:C0011311Dengue Fever1BeFree
umls:C0011570Mental Depression1BeFree
umls:C0011581Depressive disorder1BeFree
umls:C0011881Diabetic Nephropathy1BeFree
umls:C0014121Bacterial Endocarditis1BeFree
umls:C0017662Glomerulonephritis, Membranoproliferative1BeFree
umls:C0018939Hematological Disease1BeFree
umls:C0019080Hemorrhage1LHGDN
umls:C0019196Hepatitis C1LHGDN
umls:C0020540Malignant Hypertension1LHGDN
umls:C0020541Hypertension, Portal1BeFree
umls:C0023418leukemia1BeFree
umls:C0023487Acute Promyelocytic Leukemia1BeFree
umls:C0023903Liver neoplasms1BeFree
umls:C0024141Lupus Erythematosus, Systemic1BeFree
umls:C0024299Lymphoma1BeFree
umls:C0024534Malaria, Cerebral1BeFree
umls:C0024537Malaria, Vivax1BeFree
umls:C0024790Paroxysmal nocturnal hemoglobinuria1BeFree
umls:C0025306Meningococcemia1BeFree
umls:C0026470Monoclonal Gammopathy of Undetermined Significance1BeFree
umls:C0027627Neoplasm Metastasis1LHGDN
umls:C0027819Neuroblastoma1BeFree
umls:C0029882Otitis Media1LHGDN
umls:C0030305Pancreatitis1LHGDN
umls:C0032914Pre-Eclampsia1LHGDN
umls:C0032964Pregnancy Complications, Hematologic1GAD
umls:C0036983Septic Shock1LHGDN
umls:C0037274Dermatologic disorders1BeFree
umls:C0037926Compression of spinal cord1RGD
umls:C0042487Venous Thrombosis1RGD
umls:C0085096Peripheral Vascular Diseases1GAD
umls:C0151744Myocardial Ischemia1BeFree
umls:C0151950Deep thrombophlebitis1BeFree
umls:C0152013Adenocarcinoma of lung (disorder)1BeFree
umls:C0265026Capillary thrombosis1BeFree
umls:C0278996Cancer of Head and Neck1BeFree
umls:C0279000Liver and Intrahepatic Biliary Tract Carcinoma1BeFree
umls:C0338106Adenocarcinoma of colon1BeFree
umls:C0338656Impaired cognition1BeFree
umls:C0340708Deep vein thrombosis of lower limb1BeFree
umls:C0345904Malignant neoplasm of liver1BeFree
umls:C0346957Disseminated Malignant Neoplasm1BeFree
umls:C0376358Malignant neoplasm of prostate1BeFree
umls:C0398623Thrombophilia1BeFree
umls:C0398650Immune thrombocytopenic purpura1CTD_human
umls:C0398777Complement Factor H Deficiency1BeFree
umls:C0400966Non-alcoholic Fatty Liver Disease1RGD
umls:C0524620Metabolic Syndrome X1BeFree
umls:C0588008Severe depression1BeFree
umls:C0598766Leukemogenesis1BeFree
umls:C0600139Prostate carcinoma1BeFree
umls:C0677898invasive cancer1BeFree
umls:C0700095Central neuroblastoma1BeFree
umls:C1168401Squamous cell carcinoma of the head and neck1BeFree
umls:C1378703Renal carcinoma1BeFree
umls:C1541923Infective endocarditis1BeFree
umls:C1561546Alkaline Phosphatase Adverse Event1GAD
umls:C1719672Severe Sepsis1BeFree
umls:C1848533Ataxia with vitamin E deficiency1BeFree
umls:C2316810Chronic kidney disease stage 51BeFree
umls:C2745900Promyelocytic leukemia1BeFree