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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for CHEK1
check button Gene summary
Basic gene informationGene symbolCHEK1
Gene namecheckpoint kinase 1
SynonymsCHK1
CytomapUCSC genome browser: 11q24.2
Type of geneprotein-coding
RefGenesNM_001114121.2,
NM_001114122.2,NM_001244846.1,NM_001274.5,NR_045204.1,
NR_045205.1,
DescriptionCHK1 checkpoint homologCheckpoint, S. pombe, homolog of, 1Chk1-Scell cycle checkpoint kinasecheckpoint kinase-1serine/threonine-protein kinase Chk1
Modification date20141222
dbXrefs MIM : 603078
HGNC : HGNC
Ensembl : ENSG00000149554
HPRD : 04356
Vega : OTTHUMG00000165853
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_CHEK1
BioGPS: 1111
PathwayNCI Pathway Interaction Database: CHEK1
KEGG: CHEK1
REACTOME: CHEK1
Pathway Commons: CHEK1
ContextiHOP: CHEK1
ligand binding site mutation search in PubMed: CHEK1
UCL Cancer Institute: CHEK1
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)CervixTestis
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)CESCTGCT
Reference showing the relevant tissue of CHEK1
Description by TissGene annotationsCancer gene
TissgsLTS
Fused withOncogene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0000077DNA damage checkpoint16963448
GO:0006975DNA damage induced protein phosphorylation16963448
GO:0010569regulation of double-strand break repair via homologous recombination15665856
GO:0018107peptidyl-threonine phosphorylation15665856
GO:0045839negative regulation of mitosis15311285
GO:0046602regulation of mitotic centrosome separation15311285
GO:0000077DNA damage checkpoint16963448
GO:0006975DNA damage induced protein phosphorylation16963448
GO:0010569regulation of double-strand break repair via homologous recombination15665856
GO:0018107peptidyl-threonine phosphorylation15665856
GO:0045839negative regulation of mitosis15311285
GO:0046602regulation of mitotic centrosome separation15311285


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TissGeneExp for CHEK1

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LIHC-1.512060393-2.7597543931.2476945.89E-129.99E-11
BRCA-0.67300106-1.8433133411.1703122817.36E-236.43E-22
LUAD-0.693196462-2.7038895662.0106931032.88E-206.15E-19
LUSC0.287294038-2.6314059622.91871.06E-373.98E-35
COAD0.39359253-0.7268343931.1204269234.99E-153.04E-13
STAD-0.124321893-1.3509062681.2265843751.52E-112.63E-09
BLCA0.02090508-1.7476686041.7685736842.45E-071.09E-05
HNSC0.019955142-1.1539355561.1738906983.48E-121.06E-10
ESCA-0.186202575-2.1575934841.9713909095.66E-060.000899131


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TissGene-miRNA for CHEK1

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for CHEK1
TissGeneSNV for CHEK1

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.D130YLUSC1
p.K337XLIHC1
p.R419SLUSC1
p.R442WSTAD1
p.G324CLUAD1
p.E223ACOAD1
p.K166NUCEC1
p.M1TLUSC1
p.E32DKIRP1
p.X477CPRAD1
p.R160LESCA1
p.R160HUCEC1
p.D235NUCEC1
p.T279ILIHC1
p.K232NGBM1
p.G289*LUSC1
p.F93VSTAD1
p.E309KBLCA1
p.R29GLGG1
p.I58VLGG1
p.S284LSTAD1
p.R379*HNSC1
p.K337*LIHC1
p.R160CLGG1
p.R160CSKCM1
p.D235YLUSC1
p.G72VTHYM1
p.V46ALUAD1
p.V312MTHCA1
p.R109*LUAD1
p.G446DLUAD1
p.H122YLUAD1
p.G324CSARC1
p.Q295EBLCA1
p.S296FSKCM1
p.D336NSTAD1
p.L136FCESC1
p.R322HCOAD1
p.R156WREAD1
p.V119FESCA1
p.R322HLIHC1
p.R379QSTAD1
p.M167LGBM1
p.R141SLUAD1
p.R160HGBM1


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TissGeneCNV for CHEK1

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for CHEK1

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNACB142976CHEK1-DCAF8chr11:125499303chr1:160248873
Chimerdb3.0FusionScanESCATCGA-L5-A4OW-01ACTNNB1-CHEK15'UTR-5'UTRchr3:41241161chr11:125496643
TCGAfusionPortalPRADABRCATCGA-OL-A66P-01ATMEM135-CHEK1CDS-3UTRChr11:86802437Chr11:125545823
TCGAfusionPortalPRADAOVTCGA-09-1665-01BCHEK1-EXOC6Out-of-frameChr11:125505428Chr10:94757231


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TissGeneNet for CHEK1

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
CHEK1, SQSTM1, TP53, XRCC5, UBC, HSP90AB1, YWHAG, MEN1, RAD51, TCF4, MSH6, CLSPN, PCNA, SFN, DNMT1, BLM, CDC25A, MSH2, CDC25C, TIMELESS, LATS2 (tumor)CHEK1, HSP90AB1, YWHAG, RAD51, POLA1, XPO1, MSH6, CLSPN, PCNA, RB1, DNMT1, BLM, PRKDC, CDC25A, FANCE, XRCC6, MSH2, CDC25C, CDC25B, TIMELESS, NEK9 (normal)
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COAD (tumor)COAD (normal)
CHEK1, SQSTM1, BRCA1, XRCC5, RAD51, POLA1, XPO1, MSH6, HSP90AA1, ATR, CLSPN, PCNA, DNMT1, BLM, CDC25A, FANCE, XRCC6, MSH2, CDC25C, CDC25B, TIMELESS (tumor)CHEK1, BRCA1, HSP90AB1, MEN1, RAD51, POLA1, XPO1, MSH6, CLSPN, PCNA, DDB1, DNMT1, BLM, PRKDC, CDC25A, FANCE, XRCC6, MSH2, CDC25C, TIMELESS, LATS2 (normal)
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HNSC (tumor)HNSC (normal)
CHEK1, SQSTM1, TP53, BRCA1, XRCC5, MEN1, RAD51, SMAD4, TCF4, CLSPN, PCNA, SFN, CUL4A, DDB1, DNMT1, SIRT5, CDC25A, FANCE, CDC25C, TIMELESS, NEK9 (tumor)CHEK1, BRCA1, CDKN1A, RAD51, POLA1, XPO1, MSH6, CHUK, CLSPN, PCNA, SFN, MCPH1, DNMT1, BLM, ATM, PRKDC, CDC25A, MSH2, CDC25C, CDC25B, TIMELESS (normal)
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KICH (tumor)KICH (normal)
CHEK1, BRCA1, XRCC5, RELA, CUL1, AATF, ATR, SIRT1, PCNA, RB1, XIAP, CUL4A, BLM, ATM, MDM4, CDC25A, FANCE, MSH2, TIMELESS, LATS2, PIGM (tumor)CHEK1, BRCA1, UBC, CDKN1A, USP7, MEN1, RAD51, CHUK, CLSPN, CSNK2B, PCNA, RB1, XIAP, UBA52, CUL4A, MCPH1, DNMT1, CDC25A, FANCE, TLK1, CDC25C (normal)
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KIRC (tumor)KIRC (normal)
CHEK1, BRCA1, XRCC5, UBC, RAD51, XPO1, CLSPN, PCNA, SFN, RB1, BLM, PSME1, MDM4, FANCE, XRCC6, MSH2, CDC25C, CDC25B, TIMELESS, LATS2, PIGM (tumor)CHEK1, CSNK2A1, BRCA1, HSP90AB1, YWHAG, RAD51, POLA1, AATF, TCF4, XPO1, MSH6, BIRC2, CLSPN, PCNA, BLM, CDC25A, XRCC6, MSH2, CDC25C, CDC25B, TIMELESS (normal)
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KIRP (tumor)KIRP (normal)
CHEK1, SQSTM1, CDKN1A, HSP90AB1, RAD51, POLA1, COPS5, HSP90AA1, SIRT1, CSNK2B, PCNA, RB1, CUL4A, PSME1, FANCE, XRCC6, CDC25B, TIMELESS, LATS2, NEK9, PIGM (tumor)CHEK1, BRCA1, MEN1, RAD51, POLA1, COPS5, AATF, MSH6, AKT1, CLSPN, PCNA, UBA52, DDB1, DNMT1, BLM, CDC25A, FANCE, MSH2, CDC25C, TIMELESS, LATS2 (normal)
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LIHC (tumor)LIHC (normal)
CHEK1, CDKN1A, RELA, HSP90AB1, USP7, YWHAG, MEN1, RAD51, CUL1, COPS5, MSH6, CHUK, ATR, CSNK2B, PCNA, RB1, UBA52, DNMT1, PSME1, SIRT5, LATS2 (tumor)CHEK1, CSNK2A1, BRCA1, XRCC5, RAD51, POLA1, AATF, MSH6, CLSPN, CSNK2B, PCNA, DNMT1, BLM, PRKDC, CDC25A, FANCE, XRCC6, MSH2, CDC25C, CDC25B, TIMELESS (normal)
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LUAD (tumor)LUAD (normal)
CHEK1, TP53, XRCC5, USP7, RAD51, CUL1, COPS5, SIRT1, CLSPN, CSNK2B, PCNA, XIAP, UBA52, BLM, PSME1, CDC25A, FANCE, XRCC6, MSH2, CDC25C, LATS2 (tumor)CHEK1, BRCA1, XRCC5, YWHAG, RAD51, POLA1, AATF, XPO1, MSH6, BIRC2, HSP90AA1, CLSPN, PCNA, DDB1, DNMT1, BLM, PRKDC, CDC25A, MSH2, CDC25C, TIMELESS (normal)
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LUSC (tumor)LUSC (normal)
CHEK1, TP53, BRCA1, UBC, RELA, YWHAG, MEN1, RAD51, XPO1, BIRC2, ATR, SIRT1, CLSPN, PCNA, DNMT1, BLM, CDC25A, MSH2, TLK1, CDC25C, TIMELESS (tumor)CHEK1, CSNK2A1, BRCA1, CDKN1A, MEN1, RAD51, POLA1, XPO1, MSH6, HSP90AA1, CLSPN, PCNA, DNMT1, BLM, PRKDC, CDC25A, MSH2, CDC25C, CDC25B, TIMELESS, LATS2 (normal)
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PRAD (tumor)PRAD (normal)
CHEK1, SQSTM1, CSNK2A1, TP53, BRCA1, USP7, YWHAG, MEN1, RAD51, AATF, SMAD4, AKT1, SIRT1, CLSPN, PCNA, SFN, XIAP, DDB1, BLM, CDC25A, LATS2 (tumor)CHEK1, MEN1, RAD51, COPS5, AATF, TCF4, CHUK, ATR, SIRT1, CSNK2B, PCNA, RB1, XIAP, UBA52, CUL4A, ATM, SIRT5, PRKDC, CDC25A, CDC25C, LATS2 (normal)
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STAD (tumor)STAD (normal)
CHEK1, CSNK2A1, TP53, YWHAG, MEN1, RAD51, CUL1, TCF4, BIRC2, AKT1, SIRT1, CLSPN, PCNA, SFN, BLM, CDC25A, TLK1, CDC25C, TIMELESS, LATS2, NEK9 (tumor)CHEK1, CSNK2A1, BRCA1, XRCC5, MEN1, RAD51, POLA1, TCF4, XPO1, MSH6, CLSPN, PCNA, DNMT1, BLM, PRKDC, CDC25A, FANCE, MSH2, CDC25C, CDC25B, TIMELESS (normal)
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THCA (tumor)THCA (normal)
CHEK1, CSNK2A1, RAD51, AATF, SMAD4, ATR, SIRT1, CSNK2B, PCNA, XIAP, UBA52, CUL4A, BLM, PSME1, XRCC6, MSH2, CDC25C, CDC25B, TIMELESS, LATS2, NEK9 (tumor)CHEK1, CSNK2A1, USP7, RAD51, SMAD4, TCF4, CHUK, ATR, SIRT1, CSNK2B, PCNA, RB1, XIAP, UBA52, CUL4A, MCPH1, PSME1, PRKDC, CDC25C, LATS2, NEK9 (normal)
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TissGeneProg for CHEK1

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for CHEK1
TissGeneDrug for CHEK1

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for CHEK1

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0006142Malignant neoplasm of breast28BeFree,GAD
umls:C0678222Breast Carcinoma23BeFree
umls:C0029925Ovarian Carcinoma13BeFree
umls:C1140680Malignant neoplasm of ovary11BeFree
umls:C0015625Fanconi Anemia9BeFree,LHGDN
umls:C0004135Ataxia Telangiectasia8BeFree
umls:C0235974Pancreatic carcinoma8BeFree
umls:C0023418leukemia7BeFree
umls:C0025202melanoma7BeFree
umls:C0242379Malignant neoplasm of lung7BeFree,GAD
umls:C0346647Malignant neoplasm of pancreas7BeFree
umls:C1527249Colorectal Cancer7BeFree,GAD
umls:C2239176Liver carcinoma7BeFree,LHGDN
umls:C0009402Colorectal Carcinoma6BeFree
umls:C0023467Leukemia, Myelocytic, Acute6BeFree
umls:C0596263Carcinogenesis6BeFree
umls:C0302592Cervix carcinoma5BeFree
umls:C0684249Carcinoma of lung5BeFree
umls:C3469521FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)5BeFree
umls:C3539878Triple Negative Breast Neoplasms5BeFree
umls:C0007102Malignant tumor of colon4BeFree
umls:C0007131Non-Small Cell Lung Carcinoma4BeFree
umls:C0017638Glioma4BeFree,GAD
umls:C0699790Colon Carcinoma4BeFree
umls:C0007137Squamous cell carcinoma3BeFree
umls:C0007847Malignant tumor of cervix3BeFree
umls:C0024299Lymphoma3BeFree
umls:C0024623Malignant neoplasm of stomach3BeFree
umls:C0280100Solid tumour3BeFree
umls:C0376358Malignant neoplasm of prostate3BeFree
umls:C0600139Prostate carcinoma3BeFree
umls:C1458155Mammary Neoplasms3BeFree,CTD_human
umls:C0005684Malignant neoplasm of urinary bladder2BeFree,GAD
umls:C0012860DNA Damage2GAD
umls:C0026764Multiple Myeloma2BeFree
umls:C0027819Neuroblastoma2BeFree
umls:C0029463Osteosarcoma2BeFree,LHGDN
umls:C0035335Retinoblastoma2BeFree
umls:C0085390Li-Fraumeni Syndrome2BeFree
umls:C0178874Tumor Progression2BeFree
umls:C0346153Breast Cancer, Familial2BeFree
umls:C0677886Epithelial ovarian cancer2BeFree,GAD
umls:C0699791Stomach Carcinoma2BeFree
umls:C0700095Central neuroblastoma2BeFree
umls:C2931822Nasopharyngeal carcinoma2BeFree
umls:C0001418Adenocarcinoma1BeFree
umls:C0001486Adenovirus Infections1BeFree
umls:C0002871Anemia1BeFree
umls:C0002894Refractory anaemia with excess blasts1BeFree
umls:C0004134Ataxia1BeFree
umls:C0006118Brain Neoplasms1GAD
umls:C0006840Candidiasis1BeFree
umls:C0007103Malignant neoplasm of endometrium1BeFree
umls:C0007124Noninfiltrating Intraductal Carcinoma1BeFree
umls:C0009207Cockayne Syndrome1BeFree
umls:C0009375Colonic Neoplasms1GAD,LHGDN
umls:C0009404Colorectal Neoplasms1LHGDN
umls:C0017661IGA Glomerulonephritis1CTD_human
umls:C0023470Myeloid Leukemia1BeFree
umls:C0024117Chronic Obstructive Airway Disease1GAD
umls:C0024121Lung Neoplasms1BeFree
umls:C0024301Lymphoma, Follicular1BeFree
umls:C0024305Lymphoma, Non-Hodgkin1LHGDN
umls:C0025007Measles1BeFree
umls:C0025286Meningioma1GAD
umls:C0025958Microcephaly1BeFree,LHGDN
umls:C0027019Myelomonocytic leukemia1BeFree
umls:C0027627Neoplasm Metastasis1BeFree
umls:C0027859Acoustic Neuroma1GAD
umls:C0030297Pancreatic Neoplasm1GAD
umls:C0031117Peripheral Neuropathy1CTD_human
umls:C0032578Polyploidy1CTD_human
umls:C0032580Adenomatous Polyposis Coli1BeFree
umls:C0032927Precancerous Conditions1BeFree
umls:C0033578Prostatic Neoplasms1LHGDN
umls:C0038356Stomach Neoplasms1BeFree
umls:C0043346Xeroderma Pigmentosum1BeFree
umls:C0085669Acute leukemia1BeFree
umls:C0149925Small cell carcinoma of lung1BeFree
umls:C0152013Adenocarcinoma of lung (disorder)1BeFree
umls:C0153252Systemic candidiasis1BeFree
umls:C0206708Cervical Intraepithelial Neoplasia1BeFree
umls:C0238033Carcinoma of Male Breast1BeFree
umls:C0242787Malignant neoplasm of male breast1BeFree
umls:C0265202Seckel syndrome1BeFree
umls:C0333516Tumor necrosis1BeFree
umls:C0334108Multiple polyps1BeFree
umls:C0476089Endometrial Carcinoma1BeFree
umls:C0585442Osteosarcoma of bone1BeFree
umls:C0686619Secondary malignant neoplasm of lymph node1BeFree
umls:C0699885Carcinoma of bladder1BeFree
umls:C0887833Carcinoma, Pancreatic Ductal1GAD
umls:C0920269Microsatellite Instability1GAD
umls:C1096616Contralateral breast cancer1BeFree
umls:C1512981Mammary Tumorigenesis1BeFree
umls:C1559154Rash and Dermatitis Adverse Event Associated with Chemoradiation1BeFree
umls:C1883486Uterine Corpus Cancer1BeFree
umls:C1955934Trichothiodystrophy Syndromes1BeFree
umls:C1961099Precursor T-Cell Lymphoblastic Leukemia-Lymphoma1BeFree
umls:C3711387Autosomal Recessive Primary Microcephaly1BeFree