TissGeneSummary for SPACA7 |
Gene summary |
Basic gene information | Gene symbol | SPACA7 |
Gene name | sperm acrosome associated 7 | |
Synonyms | C13orf28 | |
Cytomap | UCSC genome browser: 13q34 | |
Type of gene | protein-coding | |
RefGenes | NM_145248.4, | |
Description | protein SPACA7sperm acrosome-associated protein 7 | |
Modification date | 20141207 | |
dbXrefs | HGNC : HGNC | |
Ensembl : ENSG00000153498 | ||
HPRD : 14022 | ||
Vega : OTTHUMG00000017365 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_SPACA7 | |
BioGPS: 122258 | ||
Pathway | NCI Pathway Interaction Database: SPACA7 | |
KEGG: SPACA7 | ||
REACTOME: SPACA7 | ||
Pathway Commons: SPACA7 | ||
Context | iHOP: SPACA7 | |
ligand binding site mutation search in PubMed: SPACA7 | ||
UCL Cancer Institute: SPACA7 | ||
Assigned class in TissGDB* | B | |
Included tissue-specific gene expression resources | HPA,TiGER,GTEx | |
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | Testis | |
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | TGCT | |
Reference showing the relevant tissue of SPACA7 | ||
Description by TissGene annotations |
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO term | PubMed ID |
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TissGeneExp for SPACA7 |
Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
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TissGene-miRNA for SPACA7 |
Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
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TissGeneMut for SPACA7 |
TissGeneSNV for SPACA7 |
nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
- nsSNVs sorted by frequency. |
AAchange | Cancer type | # samples |
p.I30T | HNSC | 1 |
p.D45N | SKCM | 1 |
p.H125Y | SKCM | 1 |
p.E94K | PAAD | 1 |
p.V29M | SKCM | 1 |
p.R25W | HNSC | 1 |
p.K150N | THYM | 1 |
p.L160I | UCEC | 1 |
p.V29M | HNSC | 1 |
p.A73S | STAD | 1 |
p.E26Q | BLCA | 1 |
p.P31S | SKCM | 1 |
p.E63K | PAAD | 1 |
p.H148Y | SKCM | 1 |
p.L80I | KIRC | 1 |
p.H66N | BLCA | 1 |
p.H94Y | SKCM | 1 |
p.G140R | SKCM | 1 |
p.Q5K | UCEC | 1 |
p.N90K | ACC | 1 |
p.F178L | COAD | 1 |
p.S141I | ESCA | 1 |
p.G140E | SKCM | 1 |
p.N151K | READ | 1 |
p.Q58R | PRAD | 1 |
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TissGeneCNV for SPACA7 |
Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
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TissGeneFusions for SPACA7 |
Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
Chimerdb3.0 | FusionScan | LUAD | TCGA-69-7979-01A | DOCK9-SPACA7 | Out-of-Frame | chr13:99532800 | chr13:113086757 |
Chimerdb3.0 | TopHat-Fusion | LUAD | TCGA-69-7979-01A | DOCK9-SPACA7 | Out-of-Frame | chr13:99532800 | chr13:113086757 |
TCGAfusionPortal | PRADA | KIRC | TCGA-B0-5117-01A | CRYL1-SPACA7 | Out-of-frame | Chr13:21063509 | Chr13:113088799 |
TCGAfusionPortal | PRADA | LUAD | TCGA-69-7979-01A | DOCK9-SPACA7 | Out-of-frame | Chr13:99532801 | Chr13:113086758 |
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TissGeneNet for SPACA7 |
Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
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TissGeneProg for SPACA7 |
Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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TissGeneClin for SPACA7 |
TissGeneDrug for SPACA7 |
Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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TissGeneDisease for SPACA7 |
Disease information associated with TissGene (DisGeNet, 2016-06-01) |
Disease ID | Disease name | # pubmeds | Source |