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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for COL7A1
check button Gene summary
Basic gene informationGene symbolCOL7A1
Gene namecollagen, type VII, alpha 1
SynonymsEBD1|EBDCT|EBR1|NDNC8
CytomapUCSC genome browser: 3p21.1
Type of geneprotein-coding
RefGenesNM_000094.3,
DescriptionLC collagencollagen VII, alpha-1 polypeptidecollagen alpha-1(VII) chainlong-chain collagen
Modification date20141222
dbXrefs MIM : 120120
HGNC : HGNC
Ensembl : ENSG00000114270
HPRD : 00358
Vega : OTTHUMG00000133541
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_COL7A1
BioGPS: 1294
PathwayNCI Pathway Interaction Database: COL7A1
KEGG: COL7A1
REACTOME: COL7A1
Pathway Commons: COL7A1
ContextiHOP: COL7A1
ligand binding site mutation search in PubMed: COL7A1
UCL Cancer Institute: COL7A1
Assigned class in TissGDB*A
Included tissue-specific gene expression resourcesHPA,TiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)BladderProstateSkin
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)BLCAPRADSKCM
Reference showing the relevant tissue of COL7A1Tissue-specific expression and long-term deposition of human collagen VII in the skin of transgenic mice: implications for gene therapy. Sat E, Leung KH, Bruckner-Tuderman L, Cheah KS. Gene Ther. 2000 Oct;7(19):1631-9. (pmid:11083471)
go to article
Description by TissGene annotationsCancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for COL7A1

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KICH-3.884719173-0.236039173-3.648681.65E-088.48E-08
COAD1.534810058-2.0709591733.6057692311.46E-146.66E-13
LUAD-0.20319538-3.0655212422.8623258626.00E-156.15E-14
HNSC5.3217245483.0332478042.2884767447.92E-133.07E-11
LUSC3.84187416-1.9428454475.7847196081.73E-331.56E-31
THCA-1.118443919-3.7887676472.6703237292.70E-091.48E-08
LIHC-1.541419173-3.8840451732.3426262.76E-061.35E-05
ESCA4.0996226450.3025226453.79710.0008290.012803444
BLCA4.2005934591.5502197752.6503736840.0001230.001296455
KIRP-2.741768548-0.804677923-1.9370906250.000160.000520639
STAD1.046022077-1.4508216732.496843751.83E-050.00019054
KIRC-3.521153617-2.179516117-1.34163757.92E-050.000168714


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TissGene-miRNA for COL7A1

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for COL7A1
TissGeneSNV for COL7A1

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.P1582SSKCM3
p.P2748LSKCM2
p.E1923KSKCM2
p.P1410LSKCM2
p.E1535KSKCM2
p.S2378FBLCA2
p.S430FSKCM2
p.P2081SSKCM2
p.G2123VBLCA1
p.V575MLGG1
p.G2058EBLCA1
p.R2532PACC1
p.G2623DSKCM1
p.R2814QSKCM1
p.L2636FSKCM1
p.V692ISKCM1
p.P773ASARC1
p.E2676VLUSC1
p.C2912RSTAD1
p.T1396PGBM1
p.R2553WSTAD1
p.G2713CUCEC1
p.G2082RSKCM1
p.G1625EBLCA1
p.P1046TLGG1
p.D2881GBLCA1
p.R450HOV1
p.G1335ELUAD1
p.V1138MUCEC1
p.P2723STHYM1
p.R523QCOAD1
p.G810CSTAD1
p.R2424WBRCA1
p.G2230ESKCM1
p.P2259SSKCM1
p.E181QBLCA1
p.R2628WCESC1
p.R2685QBLCA1
p.V2448MLIHC1
p.R2928CCOAD1
p.P1561SSKCM1
p.V2606AUCEC1
p.G2605VHNSC1
p.K2137EPAAD1
p.S527YLUAD1
p.R1620QUCEC1
p.W976XSKCM1
p.G2413ESKCM1
p.F1106CUCEC1
p.R2424WSTAD1
p.P2667LBLCA1
p.P1441LSKCM1
p.Q1255HOV1
p.K1253NSTAD1
p.P2381ACHOL1
p.R1977HUCS1
p.R2338QLGG1
p.G1448_spliceUCEC1
p.D1983YBRCA1
p.E2343KBRCA1
p.L426PCOAD1
p.R449WSTAD1
p.R1814HCOAD1
p.P1441SLUSC1
p.R1538HCOAD1
p.G2825DUCEC1
p.Q336PCESC1
p.P2846SCOAD1
p.A36VSKCM1
p.E2106DCESC1
p.G1821DSTAD1
p.G619ELGG1
p.R1751WBLCA1
p.P1536HUCEC1
p.E865KCHOL1
p.A617SBRCA1
p.G2434ESARC1
p.R615SLUAD1
p.A2655VSTAD1
p.P2470LSKCM1
p.S1183FSKCM1
p.G1314ESKCM1
p.G2775VUCEC1
p.G2351AOV1
p.G2082ESKCM1
p.V222MBLCA1
p.P1897TLUSC1
p.K1992NSTAD1
p.K2289*LIHC1
p.T826RLUAD1
p.P1889SSKCM1
p.I1116TSTAD1
p.P1897LSKCM1
p.P1561LSKCM1
p.P1903SSKCM1
p.G1433ESKCM1
p.R2063LPRAD1
p.P1940QLUAD1
p.A2054TCOAD1
p.G2114VLUAD1
p.T498ISKCM1
p.G824RSKCM1
p.R2745QTHYM1
p.R442SKIRC1
p.W448RBRCA1
p.G2100CBRCA1
p.G824ESKCM1
p.T750MPRAD1
p.A804TSKCM1
p.E1466KSKCM1
p.G2082EBRCA1
p.Q2014*BLCA1
p.R108HCOAD1
p.G1551EESCA1
p.P1645LCOAD1
p.G1712VLUAD1
p.G2046DPAAD1
p.G2114SSKCM1
p.W448*SKCM1
p.T703ISKCM1
p.V1162ISKCM1
p.E774DLIHC1
p.R1944WSKCM1
p.E835KSKCM1
p.G1714RSKCM1
p.A1195VESCA1
p.G63VSTAD1
p.P863SKICH1
p.Q783HKIRC1
p.G1341ESKCM1
p.S320RLUAD1
p.G1919ESKCM1
p.S2378FSKCM1
p.R2424WREAD1
p.D1113NSKCM1
p.P1349LSTAD1
p.R1153HLUAD1
p.R2002CSTAD1
p.R2777PBLCA1
p.E1986KREAD1
p.G2737VLUAD1
p.S718FSKCM1
p.D746HSKCM1
p.E56KSTAD1
p.G1569VLUAD1
p.P1678SSKCM1
p.E2311KSKCM1
p.P2191LSTAD1
p.T612MREAD1
p.G2749RSTAD1
p.Q377HCOAD1
p.R1957QSKCM1
p.P1648TLUAD1
p.L310ISTAD1
p.G2046SLIHC1
p.P1364SSKCM1
p.A893VUCEC1
p.G2737*LUAD1
p.G871RSKCM1
p.G2293SCOAD1
p.G2644*BLCA1
p.D1608EUCEC1
p.R592CLUAD1
p.R1178CSKCM1
p.V972MSKCM1
p.S2826CSKCM1
p.S2512GLUSC1
p.D1593HCESC1
p.T1909MPRAD1
p.P2486SLUAD1
p.A1313VLUAD1
p.R582LBLCA1
p.R2895QUCEC1
p.V621ISKCM1
p.R185QUCEC1
p.P1007SSKCM1
p.E1261*UCEC1
p.P2145LLUAD1
p.Y805*BLCA1
p.R2485CUCEC1
p.P1352SBLCA1
p.P1176TSKCM1
p.G2242ESKCM1
p.V1093ASKCM1
p.A676TCOAD1
p.R2628WCOAD1
p.P1897SSKCM1
p.R2927CSTAD1
p.R1101WLIHC1
p.G2623DLGG1
p.Q1063ECESC1
p.K2289XLIHC1
p.G1546ESKCM1
p.G1613RBLCA1
p.Q696*LUSC1
p.H1100RCOAD1
p.R293LLIHC1
p.E2764KOV1
p.R2622QSTAD1
p.L1169FBLCA1
p.P2376LPRAD1
p.R1014QLIHC1
p.G2469VLUAD1
p.R549QSTAD1
p.E1768KSKCM1
p.F2618LLUAD1
p.K2675NCOAD1
p.S379LSKCM1
p.A121TSTAD1
p.P2879SSTAD1
p.R2504CUCEC1
p.R105CCOAD1
p.D2270YLIHC1
p.P463LSKCM1
p.G1712*PRAD1
p.P1520SSKCM1
p.R293WUCEC1
p.M1207ISKCM1
p.A2783PUCS1
p.Q1886LLIHC1
p.R1538CSKCM1
p.S959RESCA1
p.R361QLGG1
p.N284DLIHC1
p.G1782RREAD1
p.G2475RLUSC1
p.R593QSTAD1
p.G2201VLUAD1
p.G2363ESTAD1
p.A415TLGG1
p.G2174DHNSC1
p.R1574WLGG1
p.R578XCOAD1
p.G1749ESKCM1
p.G1260ABLCA1
p.P2134SLGG1
p.G1712RLUAD1
p.F194LUCS1
p.P2869LSKCM1
p.P1441LACC1
p.P457QUCEC1
p.R1201HCOAD1
p.C1234*LUAD1
p.D564GLIHC1
p.D2007NSKCM1
p.G2611RBLCA1
p.G1290ESKCM1
p.T1318ALIHC1
p.R2895WBLCA1
p.G2511WESCA1
p.G2689RSKCM1
p.R1306SLUSC1
p.G1712ESKCM1
p.G1448SUCEC1
p.R851HCOAD1
p.P2652HBLCA1
p.E2840QCESC1
p.R843QSKCM1
p.P1702LMESO1
p.R2063QUCEC1
p.H2838YLUSC1
p.G2269ESKCM1
p.G1021SSKCM1
p.F2711LSKCM1
p.G2025ACOAD1
p.G2108ESKCM1
p.I858TUCEC1
p.P1307ABLCA1
p.Y2819CLUAD1
p.G1572WLUAD1
p.P1391SSKCM1
p.G1554RSKCM1
p.T413NTHYM1
p.G1854RSKCM1
p.A254VUCS1
p.R481CSKCM1
p.A735TLGG1
p.A2361VLAML1
p.P1274TPRAD1
p.G1830ESKCM1
p.R105CSKCM1
p.C2925YCOAD1
p.W448XSKCM1
p.G1854ASTAD1
p.R669PLUAD1
p.R1366QSTAD1
p.R450CSTAD1
p.P1437SLGG1
p.R2002HUCEC1
p.P2087ALUAD1
p.R51CPAAD1
p.G1679ALGG1
p.P2045SSKCM1
p.R605WUCEC1
p.G1697VLUAD1
p.A2453TUCEC1
p.G1872SCOAD1
p.A255TSKCM1
p.R298WSKCM1
p.R357CGBM1
p.R2544QUCEC1
p.P1473SSKCM1
p.P2027LSKCM1
p.R2338QBLCA1
p.P2381HLGG1
p.R1334CCESC1
p.D1064HOV1
p.A172DLUAD1
p.E2482KSKCM1
p.R450LLUSC1
p.T2705NTHYM1
p.R2063WCOAD1
p.A1662TCOAD1
p.R2777QBLCA1
p.G1353*PAAD1
p.P1423LPAAD1
p.G2126AGBM1
p.P1742SHNSC1
p.P2027SSKCM1
p.G1613RSKCM1
p.T1140RBLCA1
p.R778CSKCM1
p.P476LUCEC1
p.V1216MPRAD1
p.P1880LSKCM1
p.D2881GLGG1
p.G2049VLUAD1
p.G1507VLUAD1
p.G2692CLUSC1
p.G2064*LUSC1
p.V461ELUAD1
p.D2483NSKCM1
p.R1666WSKCM1
p.R324WUCEC1
p.G1734SSKCM1
p.G1997CREAD1
p.P1151TCESC1
p.P2832HLUAD1
p.P1376HESCA1
p.T217MSTAD1
p.P1940STHYM1
p.G2662RUCEC1
p.P2231LHNSC1
p.S857FSKCM1
p.G2434RSARC1
p.A516TLUAD1
p.R525*LUSC1
p.R445QSTAD1
p.G2725WKIRP1
p.G2605*HNSC1
p.G1857ASTAD1
p.R1814CSKCM1
p.R449QLGG1
p.E447DSKCM1
p.R578QSKCM1
p.W976*SKCM1
p.R1594WPAAD1
p.G1412EBLCA1
p.A758TSTAD1
p.D230NBLCA1
p.R843*HNSC1
p.R1630QLGG1
p.G1697WLUAD1
p.P1775SSKCM1
p.E451QHNSC1
p.A1066VUCEC1
p.P1765SSKCM1
p.P775HCESC1
p.P2382SSKCM1
p.A1864TSTAD1
p.P2732SSKCM1
p.D1835YESCA1
p.A2783DLUAD1
p.H723YSKCM1
p.D2615HLUAD1
p.P2259LSKCM1
p.G2383DLIHC1
p.W1963SBLCA1
p.S1041FHNSC1
p.V395MESCA1
p.P2229SSKCM1
p.A624TCOAD1


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TissGeneCNV for COL7A1

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for COL7A1

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNABU615800ABHD14B-COL7A1chr3:52007850chr3:48627180
Chimerdb3.0ChiTaRsNABU198036COL7A1-CES4Achr3:48601644chr16:67043577
Chimerdb3.0FusionScanESCATCGA-LN-A8I0-01ACOL7A1-PLXNB1Out-of-Framechr3:48605006chr3:48457168


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TissGeneNet for COL7A1

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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COAD (tumor)COAD (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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HNSC (tumor)HNSC (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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KICH (tumor)KICH (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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KIRC (tumor)KIRC (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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KIRP (tumor)KIRP (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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LIHC (tumor)LIHC (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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LUAD (tumor)LUAD (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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LUSC (tumor)LUSC (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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PRAD (tumor)PRAD (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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STAD (tumor)STAD (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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THCA (tumor)THCA (normal)
COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (tumor)COL7A1, SMAD3, FN1, HSPA8, LAMA5, THBS1, COL1A1, MMP2, SHKBP1, COL4A1, LAMA1, MIA3, ZC3H7A, CBFB, LAMB3, BMP1, FBXL2, LAMC2 (normal)
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TissGeneProg for COL7A1

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for COL7A1
TissGeneDrug for COL7A1

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for COL7A1

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0079294Epidermolysis Bullosa Dystrophica96BeFree,CTD_human,GAD,LHGDN
umls:C0079474Hallopeau-Siemens Disease79BeFree,CLINVAR,MGD,ORPHANET,UNIPROT
umls:C0079136Cockayne-Touraine Disease21BeFree
umls:C0014527Epidermolysis Bullosa20BeFree,GAD,LHGDN
umls:C1275114Epidermolysis Bullosa Pruriginosa12BeFree,CTD_human,ORPHANET,UNIPROT
umls:C0432322Dominant dystrophic epidermolysis bullosa, albopapular type (disorder)11BeFree,CLINVAR,CTD_human,ORPHANET,UNIPROT
umls:C0037274Dermatologic disorders10BeFree
umls:C0007137Squamous cell carcinoma6BeFree,LHGDN
umls:C0037277Skin Diseases, Genetic6BeFree
umls:C0432321Epidermolysis bullosa, pretibial4BeFree,CLINVAR,CTD_human,ORPHANET,UNIPROT
umls:C1851573Transient bullous dermolysis of the newborn4BeFree,CLINVAR,CTD_human,ORPHANET,UNIPROT
umls:C0221260Dystrophia unguium3BeFree
umls:C0079293Epidermolysis Bullosa Acquisita2LHGDN
umls:C0085932Skin Diseases, Bullous2BeFree
umls:C0553723Squamous cell carcinoma of skin2BeFree
umls:C0007114Malignant neoplasm of skin1BeFree
umls:C0009404Colorectal Neoplasms1CTD_human
umls:C0010346Crohn Disease1LHGDN
umls:C0019296Inguinal Hernia, Indirect1BeFree
umls:C0033774Pruritus1GAD
umls:C0036341Schizophrenia1GAD
umls:C0039538Teratoma1BeFree
umls:C0079301Junctional Epidermolysis Bullosa1BeFree
umls:C0175754Agenesis of corpus callosum1BeFree
umls:C0266999Vesicular Stomatitis1BeFree
umls:C0270853Myoclonic Epilepsy, Juvenile1BeFree
umls:C0279626Squamous cell carcinoma of esophagus1BeFree
umls:C0406557Poikiloderma of Kindler1BeFree
umls:C0474886Localized recessive dystrophic epidermolysis bullosa1BeFree
umls:C0474887Generalized dystrophic epidermolysis bullosa1BeFree
umls:C1458155Mammary Neoplasms1CTD_human
umls:C1843761TOENAIL DYSTROPHY, ISOLATED1CLINVAR,CTD_human,UNIPROT
umls:C0268371Epidermolysis Bullosa With Congenital Localized Absence Of Skin And Deformity Of Nails0CLINVAR,CTD_human
umls:C1843477Epidermolysis Bullosa Simplex Superficialis0ORPHANET
umls:C2673611Epidermolysis Bullosa Dystrophica, Autosomal Recessive, Localisata Variant0CLINVAR
umls:C2673612Epidermolysis Bullosa Dystrophica Inversa, Autosomal Recessive0CLINVAR