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| TissGeneSummary for COL12A1 |
 Gene summary |
| Basic gene information | Gene symbol | COL12A1 |
| Gene name | collagen, type XII, alpha 1 | |
| Synonyms | BA209D8.1|COL12A1L|DJ234P15.1 | |
| Cytomap | UCSC genome browser: 6q12-q13 | |
| Type of gene | protein-coding | |
| RefGenes | NM_004370.5, NM_080645.2, | |
| Description | collagen alpha-1(XII) chaincollagen type XII proteoglycan | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 120320 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000111799 | ||
| HPRD : 00377 | ||
| HPRD : 00378 | ||
| Vega : OTTHUMG00000015051 | ||
| Protein | UniProt: go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_COL12A1 | |
| BioGPS: 1303 | ||
| Pathway | NCI Pathway Interaction Database: COL12A1 | |
| KEGG: COL12A1 | ||
| REACTOME: COL12A1 | ||
| Pathway Commons: COL12A1 | ||
| Context | iHOP: COL12A1 | |
| ligand binding site mutation search in PubMed: COL12A1 | ||
| UCL Cancer Institute: COL12A1 | ||
| Assigned class in TissGDB* | C | |
| Included tissue-specific gene expression resources | TiGER,GTEx | |
| Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | Bone marrowSoft tissueSkin | |
| Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | LAMLSARCSKCM | |
| Reference showing the relevant tissue of COL12A1 | ||
| Description by TissGene annotations | Fused withTSGene | |
| * Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO term | PubMed ID |
| Top |
| TissGeneExp for COL12A1 |
| Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
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| Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
 |
| Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
 |
| Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
 |
| - Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
| Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
| BRCA | 3.662060977 | 2.133709222 | 1.528351754 | 1.02E-20 | 7.72E-20 |
| HNSC | 3.005840842 | -0.247349855 | 3.253190698 | 3.89E-17 | 7.29E-15 |
| COAD | 2.192463204 | 0.35391705 | 1.838546154 | 4.97E-06 | 2.44E-05 |
| KIRP | -1.170067806 | 0.518122819 | -1.688190625 | 5.06E-06 | 2.22E-05 |
| KICH | -1.557216181 | 0.875555819 | -2.432772 | 3.40E-09 | 1.93E-08 |
| STAD | 1.850060319 | 0.785241569 | 1.06481875 | 0.00172 | 0.008143747 |
| Top |
| TissGene-miRNA for COL12A1 |
| Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
| Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
| Top |
| TissGeneMut for COL12A1 |
| TissGeneSNV for COL12A1 |
| nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
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| Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
 |
| - nsSNVs sorted by frequency. |
| AAchange | Cancer type | # samples |
| p.R1414* | SKCM | 4 |
| p.G2753C | LUSC | 2 |
| p.D1571N | SKCM | 2 |
| p.R933C | STAD | 2 |
| p.S1049L | UCEC | 2 |
| p.S395L | BRCA | 2 |
| p.R1414X | SKCM | 2 |
| p.D893E | LIHC | 2 |
| p.S2232F | SKCM | 2 |
| p.G2398E | SKCM | 2 |
| p.R1965H | STAD | 2 |
| p.K1344N | COAD | 2 |
| p.V1823I | LGG | 2 |
| p.P2712L | CESC | 1 |
| p.T1120K | THYM | 1 |
| p.S1977P | COAD | 1 |
| p.K209T | DLBC | 1 |
| p.Q1788* | BLCA | 1 |
| p.R1128T | SKCM | 1 |
| p.R1779H | STAD | 1 |
| p.E795K | SKCM | 1 |
| p.L2171S | STAD | 1 |
| p.Q1805H | PAAD | 1 |
| p.G3018D | LGG | 1 |
| p.D1681Y | LUAD | 1 |
| p.T95I | READ | 1 |
| p.E1470K | SKCM | 1 |
| p.A2406T | LUSC | 1 |
| p.V2608F | UCEC | 1 |
| p.E1887K | CESC | 1 |
| p.Y2150H | DLBC | 1 |
| p.Y512D | COAD | 1 |
| p.P1947L | LUAD | 1 |
| p.P2724T | ESCA | 1 |
| p.R3035X | STAD | 1 |
| p.S3051N | THYM | 1 |
| p.N658K | SKCM | 1 |
| p.R1396Q | GBM | 1 |
| p.R1434Q | SKCM | 1 |
| p.S395L | BLCA | 1 |
| p.V1966I | UCEC | 1 |
| p.G3024S | SKCM | 1 |
| p.T684S | LUAD | 1 |
| p.P2976H | UCEC | 1 |
| p.R2627K | SKCM | 1 |
| p.D2933N | SKCM | 1 |
| p.V675F | LUAD | 1 |
| p.G2954R | SKCM | 1 |
| p.P2971A | LUSC | 1 |
| p.L203R | STAD | 1 |
| p.P1729S | SKCM | 1 |
| p.L2819P | STAD | 1 |
| p.E858* | UCEC | 1 |
| p.G872E | SKCM | 1 |
| p.R2056M | STAD | 1 |
| p.P2865S | SKCM | 1 |
| p.R1031C | SKCM | 1 |
| p.E1429D | STAD | 1 |
| p.S390R | LUSC | 1 |
| p.P2977S | SKCM | 1 |
| p.W1773L | SKCM | 1 |
| p.Q2788P | CESC | 1 |
| p.I916N | BRCA | 1 |
| p.E1887* | LUAD | 1 |
| p.L1813R | STAD | 1 |
| p.R581C | STAD | 1 |
| p.I2081T | STAD | 1 |
| p.P1525L | SKCM | 1 |
| p.G2027* | LUAD | 1 |
| p.R1863L | LUSC | 1 |
| p.S450R | LIHC | 1 |
| p.G2105D | SARC | 1 |
| p.G2545V | LUAD | 1 |
| p.E674* | STAD | 1 |
| p.E471K | SKCM | 1 |
| p.Q857K | BLCA | 1 |
| p.W2136C | LUAD | 1 |
| p.V306A | HNSC | 1 |
| p.E311D | LUAD | 1 |
| p.E2355* | ESCA | 1 |
| p.G1136A | BLCA | 1 |
| p.H1354N | KIRP | 1 |
| p.S920L | LGG | 1 |
| p.Y2516H | BLCA | 1 |
| p.P1090S | CESC | 1 |
| p.G2969D | UCEC | 1 |
| p.S615F | HNSC | 1 |
| p.K2532N | COAD | 1 |
| p.E69* | UCEC | 1 |
| p.A2566T | COAD | 1 |
| p.R1031C | UCEC | 1 |
| p.S2518L | CESC | 1 |
| p.D2592Y | LUAD | 1 |
| p.R1594H | STAD | 1 |
| p.F2326L | BLCA | 1 |
| p.E1418K | SKCM | 1 |
| p.D1258E | STAD | 1 |
| p.M1490I | UCEC | 1 |
| p.P2784L | PRAD | 1 |
| p.S469I | PCPG | 1 |
| p.S582* | LUAD | 1 |
| p.N2338T | UCEC | 1 |
| p.Q2925* | SKCM | 1 |
| p.R1396Q | STAD | 1 |
| p.G2027E | STAD | 1 |
| p.R2964W | PCPG | 1 |
| p.G2896R | STAD | 1 |
| p.T827M | BRCA | 1 |
| p.A300V | STAD | 1 |
| p.F2843V | COAD | 1 |
| p.P3022S | SKCM | 1 |
| p.P2791L | SKCM | 1 |
| p.G839R | SKCM | 1 |
| p.K2474Q | SKCM | 1 |
| p.P1656S | STAD | 1 |
| p.Q2940R | STAD | 1 |
| p.T969A | KICH | 1 |
| p.G2520V | LUAD | 1 |
| p.S974L | SKCM | 1 |
| p.R1742H | STAD | 1 |
| p.M2904I | LIHC | 1 |
| p.Q2788* | LUAD | 1 |
| p.V1780L | LUAD | 1 |
| p.G2335E | LUAD | 1 |
| p.T2742I | PRAD | 1 |
| p.P2195L | SKCM | 1 |
| p.G2957E | SKCM | 1 |
| p.S639R | DLBC | 1 |
| p.T786K | SARC | 1 |
| p.E621Q | HNSC | 1 |
| p.K123N | UCEC | 1 |
| p.R2779H | STAD | 1 |
| p.P590S | LUAD | 1 |
| p.L1444V | LUAD | 1 |
| p.D2088N | BLCA | 1 |
| p.T372A | LGG | 1 |
| p.E1886D | LGG | 1 |
| p.G2020C | LUAD | 1 |
| p.D2484E | LUAD | 1 |
| p.T1539M | LIHC | 1 |
| p.S2040N | UCEC | 1 |
| p.E2493K | THYM | 1 |
| p.P3023L | LUSC | 1 |
| p.A1867T | COAD | 1 |
| p.R1594C | COAD | 1 |
| p.A2953T | STAD | 1 |
| p.V2480M | PRAD | 1 |
| p.G1792A | LUAD | 1 |
| p.G2013R | SKCM | 1 |
| p.D2189Y | LUAD | 1 |
| p.G2975E | BLCA | 1 |
| p.M1582I | BLCA | 1 |
| p.E2493K | UCEC | 1 |
| p.R476S | LUAD | 1 |
| p.M343I | SKCM | 1 |
| p.E1342K | UCEC | 1 |
| p.P2509T | THYM | 1 |
| p.E2355X | ESCA | 1 |
| p.R3035* | STAD | 1 |
| p.S2437F | SKCM | 1 |
| p.I793T | LIHC | 1 |
| p.L1860F | STAD | 1 |
| p.K2532N | READ | 1 |
| p.T1659K | KIRP | 1 |
| p.R2807C | SKCM | 1 |
| p.P120T | THYM | 1 |
| p.A957V | ESCA | 1 |
| p.R1054L | LIHC | 1 |
| p.E2543Q | COAD | 1 |
| p.G1232V | LUAD | 1 |
| p.D2728Y | UCEC | 1 |
| p.A1679T | SARC | 1 |
| p.R776G | BRCA | 1 |
| p.E2988* | BLCA | 1 |
| p.G1232V | SARC | 1 |
| p.P3022S | GBM | 1 |
| p.L72F | LAML | 1 |
| p.S554* | OV | 1 |
| p.V1655M | STAD | 1 |
| p.G1310E | BLCA | 1 |
| p.S2647R | ESCA | 1 |
| p.L2999M | STAD | 1 |
| p.G854V | CESC | 1 |
| p.W2217L | LUAD | 1 |
| p.D910Y | COAD | 1 |
| p.R476K | STAD | 1 |
| p.A561V | PRAD | 1 |
| p.D910Y | UCEC | 1 |
| p.P1588H | STAD | 1 |
| p.K1154T | UCEC | 1 |
| p.P2838S | SKCM | 1 |
| p.W1864* | ESCA | 1 |
| p.R972I | LUAD | 1 |
| p.S2657* | HNSC | 1 |
| p.T901A | STAD | 1 |
| p.R178I | UCEC | 1 |
| p.V1521M | COAD | 1 |
| p.M961L | READ | 1 |
| p.P211S | SKCM | 1 |
| p.G2854D | COAD | 1 |
| p.P337S | CESC | 1 |
| p.I2334T | STAD | 1 |
| p.K1608E | THYM | 1 |
| p.A573P | LUSC | 1 |
| p.R1804W | COAD | 1 |
| p.T1516A | STAD | 1 |
| p.D2137Y | SKCM | 1 |
| p.P825H | STAD | 1 |
| p.R1396Q | SKCM | 1 |
| p.F2456Y | KIRC | 1 |
| p.G2435S | STAD | 1 |
| p.S3051R | STAD | 1 |
| p.K2384T | BLCA | 1 |
| p.R3010G | LUAD | 1 |
| p.A1690T | STAD | 1 |
| p.R581C | BLCA | 1 |
| p.G1839C | LUAD | 1 |
| p.G3001A | STAD | 1 |
| p.V822F | LUAD | 1 |
| p.A2700T | COAD | 1 |
| p.E2671* | UCEC | 1 |
| p.S1777G | LIHC | 1 |
| p.K2532N | UCEC | 1 |
| p.V1823I | UCEC | 1 |
| p.I1367V | LIHC | 1 |
| p.H42Y | SKCM | 1 |
| p.S1049L | HNSC | 1 |
| p.V1761E | LUSC | 1 |
| p.A205P | LGG | 1 |
| p.V442A | LGG | 1 |
| p.A669V | UVM | 1 |
| p.V2746A | COAD | 1 |
| p.S1680L | BLCA | 1 |
| p.Y1897C | THCA | 1 |
| p.L2568P | COAD | 1 |
| p.R1291S | LUAD | 1 |
| p.V1823I | ESCA | 1 |
| p.D2514N | HNSC | 1 |
| p.M830T | LIHC | 1 |
| p.R727Q | SKCM | 1 |
| p.K1037T | ESCA | 1 |
| p.R1104* | HNSC | 1 |
| p.P2311L | SKCM | 1 |
| p.M371I | SARC | 1 |
| p.K2675N | UCEC | 1 |
| p.E2668G | STAD | 1 |
| p.G876W | PRAD | 1 |
| p.E1609_splice | LUSC | 1 |
| p.A1937T | COAD | 1 |
| p.F709S | UCEC | 1 |
| p.P2119S | LUAD | 1 |
| p.P2785L | SKCM | 1 |
| p.P2778S | LGG | 1 |
| p.Q1873L | LUAD | 1 |
| p.R2905Q | READ | 1 |
| p.V53L | TGCT | 1 |
| p.P66L | LIHC | 1 |
| p.T388M | PCPG | 1 |
| p.E69K | SKCM | 1 |
| p.V1358M | PRAD | 1 |
| p.Q2053E | HNSC | 1 |
| p.R2764I | LUAD | 1 |
| p.S117L | PAAD | 1 |
| p.R1104Q | COAD | 1 |
| p.E2531K | SKCM | 1 |
| p.Y1117F | LUAD | 1 |
| p.E344V | SARC | 1 |
| p.F1585C | COAD | 1 |
| p.W925C | LUAD | 1 |
| p.R1031C | STAD | 1 |
| p.R1987H | COAD | 1 |
| p.G3001D | STAD | 1 |
| p.R1965H | ESCA | 1 |
| p.L2391I | COAD | 1 |
| p.E471X | LIHC | 1 |
| p.P3038L | SKCM | 1 |
| p.V2480M | THYM | 1 |
| p.G3021C | LUAD | 1 |
| p.V2746I | UCEC | 1 |
| p.P3040S | SKCM | 1 |
| p.R1924H | THYM | 1 |
| p.S1768N | SKCM | 1 |
| p.P2614S | LAML | 1 |
| p.H2172R | UCEC | 1 |
| p.D2601N | COAD | 1 |
| p.K2873N | ESCA | 1 |
| p.R1224L | LUAD | 1 |
| p.P1588L | CHOL | 1 |
| p.R1031C | GBM | 1 |
| p.E332K | SKCM | 1 |
| p.V2272G | STAD | 1 |
| p.G236E | SKCM | 1 |
| p.N1849K | OV | 1 |
| p.V442L | LUAD | 1 |
| p.P1752L | SKCM | 1 |
| p.P2736S | SKCM | 1 |
| p.E968K | LUAD | 1 |
| p.P1067S | STAD | 1 |
| p.L481I | STAD | 1 |
| p.V912F | LUAD | 1 |
| p.E668K | SKCM | 1 |
| p.R1031H | PRAD | 1 |
| p.V1218M | COAD | 1 |
| p.R558T | BRCA | 1 |
| p.I2096T | LUAD | 1 |
| p.Q2187R | LGG | 1 |
| p.R933H | COAD | 1 |
| p.S1580N | COAD | 1 |
| p.E674X | STAD | 1 |
| p.S289Y | STAD | 1 |
| p.R1104X | THYM | 1 |
| p.P2311S | SKCM | 1 |
| p.T1986M | STAD | 1 |
| p.A1332P | LUAD | 1 |
| p.W2417* | SKCM | 1 |
| p.D1339Y | LAML | 1 |
| p.E283* | UCEC | 1 |
| p.R2696S | LUAD | 1 |
| p.E1429X | COAD | 1 |
| p.A588S | STAD | 1 |
| p.E716G | STAD | 1 |
| p.Y2527H | ESCA | 1 |
| p.P260S | SKCM | 1 |
| p.T290P | SKCM | 1 |
| p.V1266M | STAD | 1 |
| p.E38V | BRCA | 1 |
| p.M1296V | LIHC | 1 |
| p.S920L | LUSC | 1 |
| p.R2807H | UCEC | 1 |
| p.L1147R | STAD | 1 |
| p.T2740K | LUSC | 1 |
| p.A888T | KIRP | 1 |
| p.R1568X | LIHC | 1 |
| p.S134Y | BLCA | 1 |
| p.S2861G | STAD | 1 |
| p.R2244S | READ | 1 |
| p.P2017R | ESCA | 1 |
| p.T1652A | SKCM | 1 |
| p.K1814R | SKCM | 1 |
| p.S2937I | LIHC | 1 |
| p.L2171V | BRCA | 1 |
| p.Q774* | BLCA | 1 |
| p.Y158N | BRCA | 1 |
| p.A15T | CESC | 1 |
| p.R1235K | UCEC | 1 |
| p.G2678E | SKCM | 1 |
| p.R2980Q | BLCA | 1 |
| p.A288T | UCEC | 1 |
| p.D1816Y | PAAD | 1 |
| p.E1436K | LUSC | 1 |
| p.Q1288K | KIRC | 1 |
| p.P291T | LGG | 1 |
| p.R558I | ESCA | 1 |
| p.E968D | LUSC | 1 |
| p.C317Y | UCEC | 1 |
| p.G1486V | LUAD | 1 |
| p.G2860* | LUAD | 1 |
| p.P2061S | BRCA | 1 |
| p.W2128* | BLCA | 1 |
| p.E1712K | SKCM | 1 |
| p.D2370H | LUAD | 1 |
| p.G126E | UCEC | 1 |
| p.R1872C | SKCM | 1 |
| p.V2480A | LUAD | 1 |
| p.P3053A | STAD | 1 |
| p.A703V | COAD | 1 |
| p.G2984R | BLCA | 1 |
| p.L2415S | SKCM | 1 |
| p.S318* | LUAD | 1 |
| p.A1338V | THYM | 1 |
| p.S889T | LUAD | 1 |
| p.H1256P | LUSC | 1 |
| p.R1568* | LIHC | 1 |
| p.A880T | READ | 1 |
| p.G330R | LUAD | 1 |
| p.I1899F | LIHC | 1 |
| p.D1246N | SKCM | 1 |
| p.S1554G | STAD | 1 |
| p.R1924H | STAD | 1 |
| p.V257L | PAAD | 1 |
| p.S2364L | SKCM | 1 |
| p.E1793K | SKCM | 1 |
| p.C2741F | ACC | 1 |
| p.G1678R | LUAD | 1 |
| p.T2408M | ESCA | 1 |
| p.E2012V | SKCM | 1 |
| p.P1915T | BLCA | 1 |
| p.G2011E | SKCM | 1 |
| p.R3035* | UCEC | 1 |
| p.Y2667N | LUAD | 1 |
| p.S1389C | BLCA | 1 |
| p.R1953C | LUAD | 1 |
| p.D637N | SKCM | 1 |
| p.A579V | PRAD | 1 |
| p.S329I | GBM | 1 |
| p.G2824V | LUAD | 1 |
| p.T2618M | BRCA | 1 |
| p.V2480M | STAD | 1 |
| p.G2890R | SKCM | 1 |
| p.D1484N | SKCM | 1 |
| p.T969A | STAD | 1 |
| p.M523L | BRCA | 1 |
| p.C133W | LUSC | 1 |
| p.A703V | ESCA | 1 |
| p.A1281T | UCEC | 1 |
| p.R1031C | BLCA | 1 |
| p.G2050R | SKCM | 1 |
| p.G2975* | LUAD | 1 |
| p.D2601V | LUAD | 1 |
| p.D2046N | BRCA | 1 |
| p.T2408M | UCEC | 1 |
| p.A2097T | UCEC | 1 |
| p.P2790T | LUAD | 1 |
| p.T1910N | COAD | 1 |
| p.R933H | STAD | 1 |
| p.R1091G | LUSC | 1 |
| p.A2700S | LUSC | 1 |
| p.A373T | STAD | 1 |
| p.P929S | SKCM | 1 |
| p.C1376S | ESCA | 1 |
| p.E3008K | UCEC | 1 |
| p.R1599* | SKCM | 1 |
| p.L2237V | HNSC | 1 |
| p.G1792W | STAD | 1 |
| p.G2452W | LUAD | 1 |
| p.V750L | PRAD | 1 |
| Top |
| TissGeneCNV for COL12A1 |
| Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
 |
| Top |
| TissGeneFusions for COL12A1 |
| Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
| Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
| Chimerdb3.0 | ChiTaRs | NA | BP376743 | INS-IGF2-COL12A1 | chr11:2158516 | chr6:75904593 | |
| Chimerdb3.0 | ChiTaRs | NA | BF108734 | KAZN-COL12A1 | chr1:15444539 | chr6:75829120 | |
| Chimerdb3.0 | ChiTaRs | NA | AW995260 | MAST4-COL12A1 | chr5:66340149 | chr6:75862151 | |
| Chimerdb3.0 | ChiTaRs | NA | BF154542 | COL12A1-COL12A1 | chr6:75795888 | chr6:75795872 | |
| Chimerdb3.0 | ChiTaRs | NA | AL359627 | COL12A1-COL12A1 | chr6:75794622 | chr6:75794042 | |
| Chimerdb3.0 | ChiTaRs | NA | AA541569 | COL12A1-COL12A1 | chr6:75794213 | chr6:75794202 | |
| Chimerdb3.0 | ChiTaRs | NA | BM987506 | COL12A1-TMC5 | chr6:75796003 | chr16:19462088 | |
| Chimerdb3.0 | ChiTaRs | NA | BU945056 | COL12A1-TAGLN | chr6:75804861 | chr11:117075021 | |
| Chimerdb3.0 | ChiTaRs | NA | BF843989 | PRDM10-COL12A1 | chr11:129784637 | chr6:75825550 |
| Top |
| TissGeneNet for COL12A1 |
| Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
| BRCA (tumor) | BRCA (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| COAD (tumor) | COAD (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| HNSC (tumor) | HNSC (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| KICH (tumor) | KICH (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| KIRC (tumor) | KIRC (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| KIRP (tumor) | KIRP (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| LIHC (tumor) | LIHC (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| LUAD (tumor) | LUAD (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| LUSC (tumor) | LUSC (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| PRAD (tumor) | PRAD (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| STAD (tumor) | STAD (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| THCA (tumor) | THCA (normal) |
| COL12A1, KIAA0101, MYBPC2, DYSF (tumor) | COL12A1, KIAA0101, MYBPC2, DYSF (normal) |
 |  |
| Top |
| TissGeneProg for COL12A1 |
| Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
 |
| Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
 |
| Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
 |
| Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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| TissGeneClin for COL12A1 |
| TissGeneDrug for COL12A1 |
| Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
| DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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| TissGeneDisease for COL12A1 |
| Disease information associated with TissGene (DisGeNet, 2016-06-01) |
| Disease ID | Disease name | # pubmeds | Source |
| umls:C0026848 | Myopathy | 2 | BeFree |
| umls:C0006142 | Malignant neoplasm of breast | 1 | BeFree |
| umls:C0009402 | Colorectal Carcinoma | 1 | BeFree |
| umls:C0013720 | Ehlers-Danlos Syndrome | 1 | BeFree |
| umls:C0019348 | Herpes Simplex Infections | 1 | BeFree |
| umls:C0028754 | Obesity | 1 | BeFree |
| umls:C0038604 | Subungual exostoses | 1 | BeFree |
| umls:C0221290 | Chondromyxoid fibroma | 1 | BeFree |
| umls:C0410000 | Overlap syndrome | 1 | BeFree |
| umls:C0678222 | Breast Carcinoma | 1 | BeFree |
| umls:C1262148 | Grip strength decreased | 1 | BeFree |
| umls:C1442903 | Exostoses | 1 | LHGDN |
| umls:C1527249 | Colorectal Cancer | 1 | BeFree |
| umls:C1834674 | Bethlem myopathy | 0 | ORPHANET |
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