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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for CP
check button Gene summary
Basic gene informationGene symbolCP
Gene nameceruloplasmin (ferroxidase)
SynonymsCP-2
CytomapUCSC genome browser: 3q23-q25
Type of geneprotein-coding
RefGenesNM_000096.3,
NR_046371.1,
Descriptionceruloplasmin
Modification date20141219
dbXrefs MIM : 117700
HGNC : HGNC
Ensembl : ENSG00000047457
HPRD : 00317
Vega : OTTHUMG00000159563
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_CP
BioGPS: 1356
PathwayNCI Pathway Interaction Database: CP
KEGG: CP
REACTOME: CP
Pathway Commons: CP
ContextiHOP: CP
ligand binding site mutation search in PubMed: CP
UCL Cancer Institute: CP
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesHPA,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Liver
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)LIHC
Reference showing the relevant tissue of CP
Description by TissGene annotationsCancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for CP

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
THCA-2.249846135-0.217400373-2.0324457631.17E-075.06E-07
LUAD4.1871656121.3387449232.848420696.26E-124.49E-11
COAD-3.1679236450.452214816-3.6201384621.61E-112.99E-10
KICH-6.031259491-0.298367491-5.7328924.00E-202.94E-18
BRCA0.2211733861.801754088-1.5805807021.10E-052.71E-05
LIHC6.8131605098.698732509-1.8855722.53E-082.02E-07
KIRC4.679996120.2651891754.4148069449.39E-241.01E-22
HNSC-1.7466112120.899984137-2.6465953494.13E-050.000202893


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TissGene-miRNA for CP

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for CP
TissGeneSNV for CP

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.E251KUCEC3
p.E594KSKCM2
p.N340KLIHC1
p.E731DUCEC1
p.I861MSTAD1
p.E208XSTAD1
p.A133DLUAD1
p.E1027*UCEC1
p.E169GLGG1
p.N263SHNSC1
p.E925DCHOL1
p.D531GSTAD1
p.E129KSKCM1
p.F920LUCEC1
p.F578LUCEC1
p.Q970HGBM1
p.T83SLUAD1
p.N956KSTAD1
p.N384KLIHC1
p.E210*UCEC1
p.L805QGBM1
p.H566NUCS1
p.G195RCOAD1
p.G838RLUAD1
p.K148*SARC1
p.D611HBLCA1
p.S865FBLCA1
p.E216XREAD1
p.G708DGBM1
p.D146YLUSC1
p.S191LCESC1
p.E251KCOAD1
p.V1056IUCEC1
p.S865FSTAD1
p.L592FSKCM1
p.G569WKIRP1
p.R367HCOAD1
p.Y260HSKCM1
p.S241LBLCA1
p.S622PCOAD1
p.F351LLUAD1
p.K110IUCEC1
p.L666MREAD1
p.G563RSKCM1
p.F92LLGG1
p.E954KREAD1
p.H120YBLCA1
p.R793HDLBC1
p.D703GUCEC1
p.N263DLGG1
p.N762TBRCA1
p.G418SSKCM1
p.I390MLIHC1
p.G708SUCEC1
p.L808IUCEC1
p.K42NUCEC1
p.W89CLUAD1
p.M557ISKCM1
p.K68NBRCA1
p.M965TPAAD1
p.W743*SKCM1
p.M158IREAD1
p.D206NLUAD1
p.N716DTHYM1
p.N365HKIRP1
p.G264ESKCM1
p.G988CHNSC1
p.S79PBRCA1
p.R258KSKCM1
p.P387SSKCM1
p.E380KSKCM1
p.F600VPRAD1
p.D184NCESC1
p.R436GSARC1
p.Y24HPAAD1
p.P477LLUAD1
p.R864KSKCM1
p.D252VLIHC1
p.S1002IPRAD1
p.E208*STAD1
p.Y155HUCEC1
p.T701ILUAD1
p.E943KESCA1
p.D573YUCEC1
p.E842DUCS1
p.E950DACC1
p.G195RSTAD1
p.N306KGBM1
p.V886GESCA1
p.V643MCOAD1
p.Q1058KBRCA1
p.R481SCOAD1
p.S1012GCHOL1
p.D654NSTAD1
p.E616GLIHC1
p.D595YCOAD1
p.Y260COV1
p.E153*LUAD1
p.P876SHNSC1
p.R436QCOAD1
p.G771ELUSC1
p.F351LCOAD1
p.A530SREAD1
p.N483SCOAD1
p.A737TPRAD1
p.G170RSKCM1
p.G132VUCEC1
p.G447CLUAD1
p.S492CTHYM1
p.Y239*LUAD1
p.E216KUCEC1
p.D214NLUAD1
p.E723QHNSC1
p.D279VLUAD1
p.I311VBLCA1
p.P582SHNSC1
p.Y67CKIRP1
p.G168ASKCM1
p.A161VSTAD1


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TissGeneCNV for CP

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for CP

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNABG945303ATXN7-CPchr3:63951571chr3:148911232
Chimerdb3.0FusionScanBRCATCGA-BH-A18V-06ACP-SOX5Out-of-Framechr3:148939433chr12:23999127
TCGAfusionPortalPRADABRCATCGA-AR-A0U4-01ACP-WWTR1CDS-5UTRChr3:148905839Chr3:149387678
TCGAfusionPortalPRADABRCATCGA-BH-A18V-01ACP-SOX5Out-of-frameChr3:148939434Chr12:23999127


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TissGeneNet for CP

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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COAD (tumor)COAD (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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HNSC (tumor)HNSC (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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KICH (tumor)KICH (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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KIRC (tumor)KIRC (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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KIRP (tumor)KIRP (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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LIHC (tumor)LIHC (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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LUAD (tumor)LUAD (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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LUSC (tumor)LUSC (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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PRAD (tumor)PRAD (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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STAD (tumor)STAD (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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THCA (tumor)THCA (normal)
CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (tumor)CP, UBC, HIF1A, BTRC, PITX3, PLG, RAD21, LTF, MPO, SLC40A1, PROC, ATP7A, GAST (normal)
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TissGeneProg for CP

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for CP
TissGeneDrug for CP

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for CP

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0878682Ceruloplasmin deficiency28BeFree,CLINVAR,MGD,ORPHANET
umls:C0019202Hepatolenticular Degeneration26BeFree,CTD_human
umls:C0282193Iron Overload12BeFree,CTD_human
umls:C0012715Iron Metabolism Disorders8BeFree,CTD_human,RGD
umls:C0152457Kayser-Fleischer ring8BeFree
umls:C0524851Neurodegenerative Disorders8BeFree
umls:C0030567Parkinson Disease7BeFree,CTD_human,GAD,LHGDN
umls:C0002395Alzheimer's Disease6BeFree,GAD,LHGDN
umls:C0011849Diabetes Mellitus6BeFree,CTD_human,LHGDN
umls:C0018995Hemochromatosis5BeFree,CTD_human,LHGDN
umls:C0235031Neurologic Symptoms5BeFree
umls:C0268070Hypocupremia5BeFree
umls:C0002871Anemia4BeFree
umls:C0022716Menkes Kinky Hair Syndrome4BeFree,CTD_human
umls:C0023895Liver diseases4BeFree,LHGDN
umls:C0002878Anemia, Hemolytic3BeFree
umls:C0003873Rheumatoid Arthritis3BeFree,CTD_human,LHGDN
umls:C0007222Cardiovascular Diseases3BeFree,LHGDN
umls:C0011854Diabetes Mellitus, Insulin-Dependent3BeFree,CTD_human,GAD
umls:C0017638Glioma3BeFree,LHGDN
umls:C0022116Ischemia3BeFree,CTD_human
umls:C0035304Retinal Degeneration3BeFree,CTD_human
umls:C0242383Age related macular degeneration3BeFree
umls:C2931082Familial apoceruloplasmin deficiency3CTD_human,ORPHANET
umls:C0002736Amyotrophic Lateral Sclerosis2GAD,LHGDN
umls:C0004352Autistic Disorder2BeFree,CTD_human
umls:C0009375Colonic Neoplasms2CTD_human,LHGDN
umls:C0011847Diabetes2BeFree
umls:C0013362Dysarthria2BeFree
umls:C0015230Exanthema2BeFree
umls:C0017601Glaucoma2BeFree
umls:C0017661IGA Glomerulonephritis2BeFree,CTD_human
umls:C0019114Hemosiderosis2BeFree
umls:C0027765nervous system disorder2BeFree
umls:C0040822Tremor2BeFree,LHGDN
umls:C0220756Niemann-Pick Disease, Type C2BeFree
umls:C0238339Hereditary pancreatitis2BeFree
umls:C0392514Hereditary hemochromatosis2BeFree
umls:C0848332Spots on skin2BeFree
umls:C0993582Arthritis, Experimental2CTD_human,RGD
umls:C2239176Liver carcinoma2BeFree,CTD_human
umls:C0000786Spontaneous abortion1GAD
umls:C0001925Albuminuria1CTD_human
umls:C0002875Cooley's anemia1BeFree
umls:C0002965Angina, Unstable1LHGDN
umls:C0003130Anoxia1GAD
umls:C0003850Arteriosclerosis1BeFree
umls:C0004134Ataxia1CTD_human
umls:C0004153Atherosclerosis1BeFree
umls:C0005747Blepharospasm1BeFree
umls:C0006111Brain Diseases1CTD_human
umls:C0007137Squamous cell carcinoma1BeFree
umls:C0007758Cerebellar Ataxia1BeFree
umls:C0007786Brain Ischemia1RGD
umls:C0011570Mental Depression1GAD
umls:C0011853Diabetes Mellitus, Experimental1RGD
umls:C0013080Down Syndrome1BeFree
umls:C0013384Dyskinetic syndrome1CTD_human
umls:C0013421Dystonia1LHGDN
umls:C0014544Epilepsy1BeFree
umls:C0015371Extrapyramidal Disorders1BeFree
umls:C0018799Heart Diseases1RGD
umls:C0018801Heart failure1BeFree
umls:C0018802Congestive heart failure1BeFree
umls:C0019188Hepatitis, Animal1RGD
umls:C0019189Hepatitis, Chronic1CTD_human
umls:C0020179Huntington Disease1LHGDN
umls:C0020550Hyperthyroidism1RGD
umls:C0022658Kidney Diseases1BeFree
umls:C0023904Liver Neoplasms, Experimental1CTD_human
umls:C0024437Macular degeneration1BeFree
umls:C0025202melanoma1CTD_human
umls:C0026650Movement Disorders1BeFree
umls:C0027051Myocardial Infarction1BeFree
umls:C0027746Nerve Degeneration1CTD_human
umls:C0028754Obesity1BeFree
umls:C0029925Ovarian Carcinoma1BeFree
umls:C0032914Pre-Eclampsia1CTD_human,LHGDN
umls:C0033860Psoriasis1CTD_human
umls:C0034150Purpura1LHGDN
umls:C0035334Retinitis Pigmentosa1BeFree
umls:C0036341Schizophrenia1CTD_human
umls:C0036572Seizures1BeFree
umls:C0040034Thrombocytopenia1LHGDN
umls:C0040136Thyroid Neoplasm1RGD
umls:C0042384Vasculitis1BeFree
umls:C0085397Pasteurellaceae Infections1CTD_human
umls:C0151731Hepatic infarction1BeFree
umls:C0232197Fibrillation1BeFree
umls:C0235974Pancreatic carcinoma1BeFree
umls:C0240066Iron deficiency1BeFree
umls:C0279702Conventional (Clear Cell) Renal Cell Carcinoma1BeFree
umls:C0341439Chronic liver disease1BeFree
umls:C0346647Malignant neoplasm of pancreas1BeFree
umls:C0374997Helicobacter pylori (H. pylori) infection in conditions classified elsewhere and of unspecified site1BeFree
umls:C0400966Non-alcoholic Fatty Liver Disease1BeFree
umls:C0403440Thin basement membrane disease1BeFree
umls:C0426980Motor symptoms1BeFree
umls:C0497327Dementia1CTD_human
umls:C0524620Metabolic Syndrome X1BeFree
umls:C0740457Malignant neoplasm of kidney1BeFree
umls:C0741923cardiac event1BeFree
umls:C0854279Basal ganglion degeneration1BeFree
umls:C0919267ovarian neoplasm1BeFree
umls:C0948089Acute Coronary Syndrome1BeFree
umls:C1140680Malignant neoplasm of ovary1BeFree
umls:C1266042Chromophobe Renal Cell Carcinoma1BeFree
umls:C1306837Papillary Renal Cell Carcinoma1BeFree
umls:C1527311Brain Edema1RGD
umls:C1833213Hyperferritinemia, hereditary, with congenital cataracts1BeFree
umls:C2930898Benign essential blepharospasm1BeFree
umls:C2931845Neurodegeneration with brain iron accumulation (NBIA)1BeFree
umls:C3714619Insulin resistance syndrome1BeFree
umls:C1858583HEMOSIDEROSIS, SYSTEMIC, DUE TO ACERULOPLASMINEMIA0CLINVAR