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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for SLC2A14
check button Gene summary
Basic gene informationGene symbolSLC2A14
Gene namesolute carrier family 2 (facilitated glucose transporter), member 14
SynonymsGLUT14|SLC2A3P3
CytomapUCSC genome browser: 12p13.31
Type of geneprotein-coding
RefGenesNM_001286233.1,
NM_001286234.1,NM_001286235.1,NM_001286236.1,NM_001286237.1,
NM_153449.3,
Descriptionglucose transporter type 14solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 3solute carrier family 2, facilitated glucose transporter member 14
Modification date20141207
dbXrefs MIM : 611039
HGNC : HGNC
Ensembl : ENSG00000173262
HPRD : 11573
Vega : OTTHUMG00000168463
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_SLC2A14
BioGPS: 144195
PathwayNCI Pathway Interaction Database: SLC2A14
KEGG: SLC2A14
REACTOME: SLC2A14
Pathway Commons: SLC2A14
ContextiHOP: SLC2A14
ligand binding site mutation search in PubMed: SLC2A14
UCL Cancer Institute: SLC2A14
Assigned class in TissGDB*A
Included tissue-specific gene expression resourcesHPA,TiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Testis
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)TGCT
Reference showing the relevant tissue of SLC2A14The SLC2A14 gene: genomic locus, tissue expression, splice variants, and subcellular localization of the protein. Amir Shaghaghi M, Murphy B, Eck P. Biochem Cell Biol. 2016 Aug;94(4):331-5. doi: 10.1139/bcb-2015-0089. Epub 2016 Apr 25 (pmid:27460888)
go to article
Description by TissGene annotations
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for SLC2A14

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LUAD-0.2596790790.742564025-1.0022431031.66E-065.40E-06
KIRC0.397587684-1.5413831491.9389708334.46E-193.20E-18
BLCA-1.3482428720.231025549-1.5792684210.0005720.004543314


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TissGene-miRNA for SLC2A14

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples
LUADhsa-miR-92a-3pMIMAT00000920.048-0.2660


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TissGeneMut for SLC2A14
TissGeneSNV for SLC2A14

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.G364RSKCM2
p.L107POV1
p.R248PLUAD1
p.T60KCOAD1
p.H382YSKCM1
p.A335VHNSC1
p.R115LHNSC1
p.T39APAAD1
p.G506EBRCA1
p.E276KSKCM1
p.F46VUCEC1
p.G441RUCEC1
p.G106RUCEC1
p.I81NKIRP1
p.S117XSTAD1
p.V504ICOAD1
p.S446YTHYM1
p.A126VPRAD1
p.R240KSKCM1
p.V474IKIRC1
p.G152AUCEC1
p.F471LBLCA1
p.S90YUCEC1
p.R234KSKCM1
p.G364VSTAD1
p.G456RUCEC1
p.E199*LIHC1
p.M505ISKCM1
p.R267QGBM1
p.I66NKIRP1
p.L217FSKCM1
p.Q47*SKCM1
p.V287AUCEC1
p.G156RSKCM1
p.I135FKIRP1
p.R252WHNSC1
p.A335THNSC1
p.R148HTHYM1
p.L467FLUAD1
p.T247MESCA1
p.W223CLUSC1
p.S509NSKCM1
p.P423LSKCM1
p.G506ECOAD1
p.G503SUCEC1
p.T42AUCEC1
p.R111CSTAD1
p.P423SSKCM1
p.E415KSKCM1
p.R115HCOAD1
p.E483DKIRC1
p.V30FSKCM1
p.A414SGBM1
p.E515KSKCM1
p.V96ITHCA1
p.S223CESCA1
p.I333FLUAD1
p.G106RCOAD1
p.D268NSKCM1
p.S376YSTAD1
p.S79YLUAD1
p.G121RUCEC1
p.G176SCOAD1
p.S117*STAD1
p.T247MCOAD1
p.W434*SKCM1
p.N85HUCEC1
p.D484NSKCM1
p.D484YBLCA1
p.V105IBLCA1
p.R478CLIHC1
p.G515WUCEC1
p.Q194KLUAD1
p.R306*GBM1
p.L442VDLBC1
p.T247MBRCA1
p.G167AUCEC1
p.K63QUCEC1
p.I220VLUAD1
p.I169MHNSC1
p.V192GUCS1
p.Y165HPAAD1
p.G106RSTAD1
p.E206GHNSC1
p.R115HLGG1
p.I120FKIRP1
p.R478CLGG1
p.A33TLGG1
p.S223NSKCM1
p.F61VUCEC1


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TissGeneCNV for SLC2A14

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for SLC2A14

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
TCGAfusionPortalPRADAGBMTCGA-06-0238-01AFOXM1-SLC2A14In-frameChr12:2977729Chr12:7970630


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TissGeneNet for SLC2A14

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)


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TissGeneProg for SLC2A14

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for SLC2A14
TissGeneDrug for SLC2A14

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for SLC2A14

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0002395Alzheimer's Disease3BeFree
umls:C0007137Squamous cell carcinoma3BeFree
umls:C0596263Carcinogenesis3BeFree
umls:C0001418Adenocarcinoma2BeFree
umls:C0005684Malignant neoplasm of urinary bladder2BeFree
umls:C0006142Malignant neoplasm of breast2BeFree
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent2BeFree
umls:C0017638Glioma2BeFree
umls:C0020179Huntington Disease2BeFree
umls:C0040136Thyroid Neoplasm2BeFree
umls:C0085207Gestational Diabetes2BeFree
umls:C0678222Breast Carcinoma2BeFree
umls:C0699885Carcinoma of bladder2BeFree
umls:C0004114Astrocytoma1BeFree
umls:C0004997Benign Ovarian Neoplasm1BeFree
umls:C0007102Malignant tumor of colon1BeFree
umls:C0007107Malignant neoplasm of larynx1BeFree
umls:C0007125Carcinoma, Ehrlich Tumor1BeFree
umls:C0007131Non-Small Cell Lung Carcinoma1BeFree
umls:C0008497Choriocarcinoma1BeFree
umls:C0014548Epilepsy, Generalized1BeFree
umls:C0017636Glioblastoma1BeFree
umls:C0019829Hodgkin Disease1BeFree
umls:C0020456Hyperglycemia1BeFree
umls:C0023449Acute lymphocytic leukemia1BeFree
umls:C0024141Lupus Erythematosus, Systemic1BeFree
umls:C0025312Meningomyelocele1BeFree
umls:C0027533Neck Neoplasms1BeFree
umls:C0029925Ovarian Carcinoma1BeFree
umls:C0152013Adenocarcinoma of lung (disorder)1BeFree
umls:C0205851Germ cell tumor1BeFree
umls:C0206704Carcinoma, Large Cell1BeFree
umls:C0242363Islet Cell Tumor1BeFree
umls:C0242379Malignant neoplasm of lung1BeFree
umls:C0271650Impaired glucose tolerance1BeFree
umls:C0524528Pervasive Development Disorder1BeFree
umls:C0595921Intraocular pressure disorder1BeFree
umls:C0595989Carcinoma of larynx1BeFree
umls:C0684249Carcinoma of lung1BeFree
umls:C0699790Colon Carcinoma1BeFree
umls:C1140680Malignant neoplasm of ovary1BeFree
umls:C1510586Autism Spectrum Disorders1BeFree
umls:C1961102Precursor Cell Lymphoblastic Leukemia Lymphoma1BeFree