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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for CYP1A2
check button Gene summary
Basic gene informationGene symbolCYP1A2
Gene namecytochrome P450, family 1, subfamily A, polypeptide 2
SynonymsCP12|P3-450|P450(PA)
CytomapUCSC genome browser: 15q24.1
Type of geneprotein-coding
RefGenesNM_000761.4,
DescriptionCYPIA2P450 form 4aryl hydrocarbon hydroxylasecytochrome P(3)450cytochrome P450 1A2cytochrome P450 4cytochrome P450, subfamily I (aromatic compound-inducible), polypeptide 2cytochrome P450-P3dioxin-inducible P3-450flavoprotein-linked monooxygenase
Modification date20141207
dbXrefs MIM : 124060
HGNC : HGNC
Ensembl : ENSG00000140505
HPRD : 00489
Vega : OTTHUMG00000172901
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_CYP1A2
BioGPS: 1544
PathwayNCI Pathway Interaction Database: CYP1A2
KEGG: CYP1A2
REACTOME: CYP1A2
Pathway Commons: CYP1A2
ContextiHOP: CYP1A2
ligand binding site mutation search in PubMed: CYP1A2
UCL Cancer Institute: CYP1A2
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesHPA,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Liver
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)LIHC
Reference showing the relevant tissue of CYP1A2
Description by TissGene annotations
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0009403toxin biosynthetic process11511187
GO:0009820alkaloid metabolic process11511187
GO:0016098monoterpenoid metabolic process16401082
GO:0017144drug metabolic process15327587
GO:0032787monocarboxylic acid metabolic process19651758
GO:0042738exogenous drug catabolic process18619574
GO:0046483heterocycle metabolic process15327587
GO:0055114oxidation-reduction process16401082
GO:0070989oxidative demethylation18619574
GO:0071615oxidative deethylation19029318
GO:0009403toxin biosynthetic process11511187
GO:0009820alkaloid metabolic process11511187
GO:0016098monoterpenoid metabolic process16401082
GO:0017144drug metabolic process15327587
GO:0032787monocarboxylic acid metabolic process19651758
GO:0042738exogenous drug catabolic process18619574
GO:0046483heterocycle metabolic process15327587
GO:0055114oxidation-reduction process16401082
GO:0070989oxidative demethylation18619574
GO:0071615oxidative deethylation19029318


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TissGeneExp for CYP1A2

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KIRC-2.197167903-0.129351236-2.0678166675.92E-235.87E-22
LUAD-1.6424836122.250914664-3.8933982762.46E-261.31E-24
LUSC-1.8682633281.994371966-3.8626352944.47E-271.27E-25
LIHC4.35533231911.73810632-7.3827743.18E-161.22E-14
KICH2.4698543190.3834423192.0864120.003890.00752727
HNSC-2.103185216-1.054448006-1.0487372095.09E-050.000245236
KIRP-1.815098806-0.190223806-1.6248753.86E-050.000144235


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TissGene-miRNA for CYP1A2

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for CYP1A2
TissGeneSNV for CYP1A2

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.V483MUCEC2
p.V483MBRCA2
p.D393NSKCM2
p.G30DBLCA1
p.M448ICESC1
p.S155FSKCM1
p.W466XSKCM1
p.H378NLUAD1
p.R358WPAAD1
p.T284MCOAD1
p.R503LHNSC1
p.D490NSKCM1
p.R510WUCEC1
p.R296TBLCA1
p.R457LHNSC1
p.G486VUCEC1
p.L51VBRCA1
p.P295LCOAD1
p.D104NLUSC1
p.P337LSKCM1
p.S156LSKCM1
p.R79CLGG1
p.P8SSKCM1
p.R512CSTAD1
p.R90HCOAD1
p.A97TKIRC1
p.E211KHNSC1
p.V409ALUAD1
p.I302MTHCA1
p.R355LSTAD1
p.Q77HBLCA1
p.P8LSKCM1
p.P246SUCS1
p.A502TCOAD1
p.G30CSKCM1
p.Q101RUCEC1
p.R356WPRAD1
p.R243CSKCM1
p.D282NSKCM1
p.R137WSKCM1
p.E162KSKCM1
p.G460RUCEC1
p.E346QHNSC1
p.R136HSTAD1
p.W466*SKCM1
p.K59NESCA1
p.R90CCOAD1
p.E211KLUAD1
p.R137WUCEC1
p.A150TUCS1
p.D104NSKCM1
p.T83MKICH1
p.A435STHYM1
p.S298RDLBC1
p.D103NSKCM1
p.G294EUCEC1
p.A140SUCEC1
p.P84LSKCM1
p.K442NSARC1
p.P484TOV1
p.A19TGBM1
p.Q177PKIRP1
p.S327FSKCM1
p.A286DUCEC1
p.K500ESTAD1
p.R243GBLCA1
p.R100QCOAD1
p.V192MKIRP1
p.V85MLGG1
p.D490GSTAD1
p.R108QOV1
p.K488ICOAD1
p.H224QSARC1
p.D214NSARC1
p.Y400HUCEC1


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TissGeneCNV for CYP1A2

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for CYP1A2

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP


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TissGeneNet for CYP1A2

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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COAD (tumor)COAD (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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HNSC (tumor)HNSC (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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KICH (tumor)KICH (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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KIRC (tumor)KIRC (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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KIRP (tumor)KIRP (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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LIHC (tumor)LIHC (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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LUAD (tumor)LUAD (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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LUSC (tumor)LUSC (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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PRAD (tumor)PRAD (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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STAD (tumor)STAD (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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THCA (tumor)THCA (normal)
CYP1A2, POR (tumor)CYP1A2, POR (normal)
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TissGeneProg for CYP1A2

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for CYP1A2
TissGeneDrug for CYP1A2

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for CYP1A2

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0006142Malignant neoplasm of breast28BeFree,GAD
umls:C1527249Colorectal Cancer28BeFree,GAD
umls:C0036341Schizophrenia24BeFree,GAD
umls:C0678222Breast Carcinoma23BeFree
umls:C0242379Malignant neoplasm of lung20BeFree,GAD
umls:C0009402Colorectal Carcinoma19BeFree
umls:C0684249Carcinoma of lung17BeFree
umls:C2239176Liver carcinoma15BeFree,GAD,LHGDN
umls:C0005684Malignant neoplasm of urinary bladder13BeFree,GAD
umls:C0152115Lingual-Facial-Buccal Dyskinesia13BeFree,GAD
umls:C0686347Tardive Dyskinesia13BeFree,GAD
umls:C0023903Liver neoplasms8BeFree
umls:C0699885Carcinoma of bladder8BeFree
umls:C0376358Malignant neoplasm of prostate7BeFree,GAD
umls:C0596263Carcinogenesis6BeFree
umls:C0003873Rheumatoid Arthritis5BeFree,GAD,LHGDN
umls:C0009404Colorectal Neoplasms5CTD_human,GAD,LHGDN
umls:C0023895Liver diseases4BeFree,CTD_human,GAD
umls:C0024117Chronic Obstructive Airway Disease4BeFree,CTD_human,GAD,LHGDN
umls:C0024305Lymphoma, Non-Hodgkin4GAD
umls:C0024623Malignant neoplasm of stomach4BeFree,GAD
umls:C0162566Porphyria Cutanea Tarda4BeFree,CTD_human,GAD,LHGDN
umls:C0476089Endometrial Carcinoma4BeFree,GAD
umls:C1140680Malignant neoplasm of ovary4BeFree,GAD
umls:C1302401Adenoma of large intestine4BeFree
umls:C0001418Adenocarcinoma3BeFree
umls:C0004096Asthma3BeFree,GAD
umls:C0005695Bladder Neoplasm3BeFree,LHGDN
umls:C0007222Cardiovascular Diseases3GAD
umls:C0020538Hypertensive disease3BeFree,GAD
umls:C0027051Myocardial Infarction3BeFree,GAD,LHGDN
umls:C0029925Ovarian Carcinoma3BeFree
umls:C0241910Hepatitis, Autoimmune3BeFree
umls:C0243026Sepsis3BeFree,RGD
umls:C0345904Malignant neoplasm of liver3GAD
umls:C0346647Malignant neoplasm of pancreas3BeFree,GAD
umls:C0699790Colon Carcinoma3BeFree
umls:C0699791Stomach Carcinoma3BeFree
umls:C1263733Uroporphyrinuria3BeFree
umls:C0001430Adenoma2BeFree,GAD
umls:C0007102Malignant tumor of colon2BeFree
umls:C0007113Rectal Carcinoma2BeFree
umls:C0007137Squamous cell carcinoma2BeFree,CTD_human
umls:C0014170Endometrial Neoplasms2GAD
umls:C0014859Esophageal Neoplasms2GAD
umls:C0018671Head and Neck Neoplasms2GAD
umls:C0023055Laryngeal neoplasm2GAD
umls:C0023890Liver Cirrhosis2BeFree
umls:C0023904Liver Neoplasms, Experimental2CTD_human
umls:C0024121Lung Neoplasms2CTD_human,LHGDN
umls:C0026640Mouth Neoplasms2GAD
umls:C0030297Pancreatic Neoplasm2GAD,LHGDN
umls:C0030567Parkinson Disease2GAD
umls:C0031347Pharyngeal Neoplasms2GAD
umls:C0032708Disorders of Porphyrin Metabolism2GAD
umls:C0085859Polyglandular Type I Autoimmune Syndrome2BeFree
umls:C0149782Squamous cell carcinoma of lung2BeFree
umls:C0149931Migraine Disorders2GAD
umls:C0152013Adenocarcinoma of lung (disorder)2BeFree
umls:C0221765Chronic schizophrenia2BeFree
umls:C0235974Pancreatic carcinoma2BeFree
umls:C0949059Polyp of large intestine2BeFree
umls:C1276127Sporadic porphyria cutanea tarda2BeFree
umls:C1458155Mammary Neoplasms2LHGDN
umls:C1512409Hepatocarcinogenesis2BeFree
umls:C1623038Cirrhosis2BeFree
umls:C1846502Mammographic Density2BeFree,GAD
umls:C1960870Transformed migraine2BeFree
umls:C0000768Congenital Abnormality1BeFree
umls:C0001627Congenital adrenal hyperplasia1GAD
umls:C0002736Amyotrophic Lateral Sclerosis1BeFree,GAD
umls:C0003850Arteriosclerosis1BeFree
umls:C0004153Atherosclerosis1BeFree
umls:C0005411Biliary Atresia1BeFree
umls:C0007103Malignant neoplasm of endometrium1BeFree
umls:C0008925Cleft Palate1BeFree
umls:C0009376Colonic Polyps1GAD
umls:C0010068Coronary heart disease1BeFree
umls:C0011570Mental Depression1GAD
umls:C0011581Depressive disorder1RGD
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent1CTD_human
umls:C0011991Diarrhea1GAD
umls:C0013386Dyskinesia, Drug-Induced1GAD
umls:C0014175Endometriosis1BeFree
umls:C0014544Epilepsy1GAD
umls:C0018273Growth Disorders1CTD_human
umls:C0019209Hepatomegaly1CTD_human
umls:C0022346Icterus1RGD
umls:C0023434Chronic Lymphocytic Leukemia1GAD
umls:C0023467Leukemia, Myelocytic, Acute1LHGDN
umls:C0023891Liver Cirrhosis, Alcoholic1BeFree
umls:C0023893Liver Cirrhosis, Experimental1CTD_human
umls:C0024301Lymphoma, Follicular1GAD
umls:C0025500Mesothelioma1GAD
umls:C0025637Methemoglobinemia1CTD_human
umls:C0027497Nausea1GAD
umls:C0027794Neural Tube Defects1CTD_human,GAD
umls:C0031117Peripheral Neuropathy1CTD_human
umls:C0032229Pleural Neoplasms1GAD
umls:C0032584polyps1BeFree
umls:C0033774Pruritus1GAD
umls:C0035220Respiratory Distress Syndrome, Newborn1BeFree
umls:C0036349Paranoid Schizophrenia1LHGDN
umls:C0037997Splenic Diseases1CTD_human
umls:C0038002Splenomegaly1CTD_human
umls:C0038454Cerebrovascular accident1GAD
umls:C0039590Testicular Neoplasms1LHGDN
umls:C0040053Thrombosis1GAD
umls:C0041755Adverse reaction to drug1CTD_human
umls:C0042963Vomiting1GAD
umls:C0079744Diffuse Large B-Cell Lymphoma1GAD
umls:C0085096Peripheral Vascular Diseases1BeFree
umls:C0085602Polydipsia1BeFree,GAD
umls:C0153381Malignant neoplasm of mouth1BeFree
umls:C0153500Malignant neoplasm of heart1BeFree
umls:C0153594Malignant neoplasm of testis1GAD
umls:C0162557Liver Failure, Acute1BeFree
umls:C0206139Lichen Planus, Oral1BeFree
umls:C0206698Cholangiocarcinoma1GAD
umls:C0220641Lip and Oral Cavity Carcinoma1BeFree
umls:C0220810Congenital defects1BeFree
umls:C0236969Substance-Related Disorders1GAD
umls:C0238462Medullary carcinoma of thyroid1BeFree
umls:C0241880Endometriosis of pelvis1BeFree
umls:C0242383Age related macular degeneration1GAD
umls:C0273115Lung Injury1CTD_human
umls:C0279680Transitional cell carcinoma of bladder1BeFree
umls:C0281361Adenocarcinoma of pancreas1BeFree
umls:C0333641Atrophic1CTD_human
umls:C0341439Chronic liver disease1BeFree
umls:C0392702Abnormal involuntary movement1BeFree
umls:C0400966Non-alcoholic Fatty Liver Disease1BeFree
umls:C0476273Respiratory distress1BeFree
umls:C0521158Recurrent tumor1BeFree
umls:C0546837Malignant neoplasm of esophagus1GAD
umls:C0596321Chemical Carcinogenesis1BeFree
umls:C0600139Prostate carcinoma1BeFree
umls:C0600142Hot flushes1BeFree,GAD
umls:C0795878Monosomy 221BeFree
umls:C0809983Schizophrenia and related disorders1BeFree
umls:C0850666Helicobacter pylori infection1BeFree
umls:C0887833Carcinoma, Pancreatic Ductal1GAD
umls:C0919267ovarian neoplasm1LHGDN
umls:C0919532Genomic Instability1GAD
umls:C0948089Acute Coronary Syndrome1GAD
umls:C1168401Squamous cell carcinoma of the head and neck1BeFree,GAD
umls:C1269683Major Depressive Disorder1GAD
umls:C1336708Testicular Germ Cell Tumor1GAD
umls:C1704436Peripheral Arterial Diseases1BeFree
umls:C1861172Venous Thromboembolism1GAD
umls:C1883486Uterine Corpus Cancer1BeFree
umls:C1956346Coronary Artery Disease1GAD
umls:C1959584Cardiac Carcinoma1BeFree
umls:C1961102Precursor Cell Lymphoblastic Leukemia Lymphoma1CTD_human
umls:C2919093caffeine stimulant related disorder1GAD