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| TissGeneSummary for ABCA13 |
 Gene summary |
| Basic gene information | Gene symbol | ABCA13 |
| Gene name | ATP-binding cassette, sub-family A (ABC1), member 13 | |
| Synonyms | - | |
| Cytomap | UCSC genome browser: 7p12.3 | |
| Type of gene | protein-coding | |
| RefGenes | NM_152701.4, | |
| Description | ATP binding cassette transporter A13ATP-binding cassette sub-family A member 13ATP-binding cassette sub-family A member 13 variant 2ATP-binding cassette sub-family A member 13 variant 3 | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 607807 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000179869 | ||
| HPRD : 07422 | ||
| Vega : OTTHUMG00000155840 | ||
| Protein | UniProt: go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_ABCA13 | |
| BioGPS: 154664 | ||
| Pathway | NCI Pathway Interaction Database: ABCA13 | |
| KEGG: ABCA13 | ||
| REACTOME: ABCA13 | ||
| Pathway Commons: ABCA13 | ||
| Context | iHOP: ABCA13 | |
| ligand binding site mutation search in PubMed: ABCA13 | ||
| UCL Cancer Institute: ABCA13 | ||
| Assigned class in TissGDB* | C | |
| Included tissue-specific gene expression resources | HPA,GTEx | |
| Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | Bone marrowThyroid gland | |
| Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | LAMLTHCA | |
| Reference showing the relevant tissue of ABCA13 | ||
| Description by TissGene annotations | ||
| * Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO term | PubMed ID |
| Top |
| TissGeneExp for ABCA13 |
| Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
 |
| Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
 |
| Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
 |
| Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
 |
| - Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
| Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
| KIRC | -2.135922948 | 1.713689552 | -3.8496125 | 1.01E-24 | 1.18E-23 |
| ESCA | 4.084716067 | -0.693902115 | 4.778618182 | 0.000446 | 0.008700912 |
| STAD | 1.38393851 | -0.52634274 | 1.91028125 | 0.00119 | 0.006082523 |
| KICH | -0.266830115 | 2.466697885 | -2.733528 | 0.000398 | 0.000927264 |
| BRCA | -0.906588957 | 0.313019815 | -1.219608772 | 0.000113 | 0.000249463 |
| LUSC | 5.098486121 | 3.110027297 | 1.988458824 | 7.40E-05 | 0.000155891 |
| Top |
| TissGene-miRNA for ABCA13 |
| Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
| Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
| Top |
| TissGeneMut for ABCA13 |
| TissGeneSNV for ABCA13 |
| nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
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| Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
 |
| - nsSNVs sorted by frequency. |
| AAchange | Cancer type | # samples |
| p.S212F | SKCM | 3 |
| p.A2368V | PAAD | 2 |
| p.E3136K | SKCM | 2 |
| p.V4607A | LIHC | 2 |
| p.W4677L | SKCM | 2 |
| p.A4524T | UCEC | 2 |
| p.A4850V | LIHC | 2 |
| p.R3995S | LIHC | 2 |
| p.V941L | DLBC | 2 |
| p.E940D | STAD | 2 |
| p.S3467F | SKCM | 2 |
| p.S229F | SKCM | 2 |
| p.T2454M | PRAD | 2 |
| p.V3997L | HNSC | 1 |
| p.S4349X | ESCA | 1 |
| p.D2556N | CESC | 1 |
| p.M3408I | SKCM | 1 |
| p.K1140Q | SKCM | 1 |
| p.D2305Y | UCEC | 1 |
| p.G845E | SKCM | 1 |
| p.D4229N | READ | 1 |
| p.S1874* | LUAD | 1 |
| p.E2988* | BLCA | 1 |
| p.T4219M | COAD | 1 |
| p.E974K | KIRC | 1 |
| p.E2350X | COAD | 1 |
| p.L1448V | BLCA | 1 |
| p.G4183R | UCEC | 1 |
| p.S80* | CESC | 1 |
| p.Y4820* | ESCA | 1 |
| p.P816L | CESC | 1 |
| p.I767S | COAD | 1 |
| p.K792N | STAD | 1 |
| p.E217K | SKCM | 1 |
| p.T287M | LUSC | 1 |
| p.E4710A | LUAD | 1 |
| p.D1074N | COAD | 1 |
| p.S1078F | SKCM | 1 |
| p.V71F | LUAD | 1 |
| p.L4937I | ESCA | 1 |
| p.N536S | BRCA | 1 |
| p.A2470T | STAD | 1 |
| p.L834V | UCEC | 1 |
| p.P3149T | LUAD | 1 |
| p.P675T | ESCA | 1 |
| p.L441P | BRCA | 1 |
| p.P4883L | BLCA | 1 |
| p.L205F | SKCM | 1 |
| p.E865K | SKCM | 1 |
| p.A926T | LUSC | 1 |
| p.W221X | COAD | 1 |
| p.S3628R | STAD | 1 |
| p.D4739Y | COAD | 1 |
| p.S843X | COAD | 1 |
| p.F1639I | STAD | 1 |
| p.R4843H | HNSC | 1 |
| p.G3875W | SARC | 1 |
| p.E4960A | UCEC | 1 |
| p.S1621X | KIRC | 1 |
| p.M3622T | LIHC | 1 |
| p.A3412T | UCEC | 1 |
| p.H1721Y | UCEC | 1 |
| p.L1492F | SKCM | 1 |
| p.R99M | LUAD | 1 |
| p.V4234F | BRCA | 1 |
| p.A2412T | SKCM | 1 |
| p.L933F | SKCM | 1 |
| p.S4724G | STAD | 1 |
| p.L422S | UCS | 1 |
| p.S1078F | CESC | 1 |
| p.A3254S | UCEC | 1 |
| p.Q72H | LUAD | 1 |
| p.Q1126R | UCEC | 1 |
| p.R4672S | ESCA | 1 |
| p.E1941K | ESCA | 1 |
| p.L1021F | SKCM | 1 |
| p.S3260Y | LUSC | 1 |
| p.V4693A | COAD | 1 |
| p.V3635I | PAAD | 1 |
| p.E3934X | LIHC | 1 |
| p.E4267K | READ | 1 |
| p.T3727I | UCEC | 1 |
| p.H1599Y | SKCM | 1 |
| p.S1462R | OV | 1 |
| p.K107R | UCEC | 1 |
| p.A4359V | STAD | 1 |
| p.K1982N | COAD | 1 |
| p.C3430* | LUAD | 1 |
| p.S1389N | UCEC | 1 |
| p.A4045V | STAD | 1 |
| p.A4593V | PAAD | 1 |
| p.R4681X | LIHC | 1 |
| p.S1132* | BLCA | 1 |
| p.S2080C | HNSC | 1 |
| p.M2762I | READ | 1 |
| p.Q2567E | BLCA | 1 |
| p.Q3528* | HNSC | 1 |
| p.A3616S | UCEC | 1 |
| p.H1059R | LUSC | 1 |
| p.Y4439F | SKCM | 1 |
| p.N3701S | LIHC | 1 |
| p.V3115I | COAD | 1 |
| p.L3273M | COAD | 1 |
| p.Q2131L | LUAD | 1 |
| p.Y690S | UCEC | 1 |
| p.L4846V | LUAD | 1 |
| p.G4641V | STAD | 1 |
| p.P862S | BLCA | 1 |
| p.S3812F | BRCA | 1 |
| p.G198C | LUAD | 1 |
| p.L2955F | LUAD | 1 |
| p.R3497Q | SKCM | 1 |
| p.L3891F | LIHC | 1 |
| p.L428F | LUSC | 1 |
| p.S1292N | TGCT | 1 |
| p.N2197H | CESC | 1 |
| p.E2585* | BLCA | 1 |
| p.R970* | BRCA | 1 |
| p.D3390N | PAAD | 1 |
| p.F4270L | PAAD | 1 |
| p.Y4605H | STAD | 1 |
| p.S64I | UCEC | 1 |
| p.V4659M | READ | 1 |
| p.R2842K | SKCM | 1 |
| p.D2520Y | LUAD | 1 |
| p.R893C | PCPG | 1 |
| p.R4043H | LUAD | 1 |
| p.L4293F | LUAD | 1 |
| p.F1692L | STAD | 1 |
| p.L4278S | LGG | 1 |
| p.L4879I | SKCM | 1 |
| p.A4921G | TGCT | 1 |
| p.A2516T | UCEC | 1 |
| p.E85* | UCEC | 1 |
| p.V3858L | LUAD | 1 |
| p.M2340I | SKCM | 1 |
| p.L3038F | SKCM | 1 |
| p.Q3230H | HNSC | 1 |
| p.R2513* | LUAD | 1 |
| p.K1923N | UCEC | 1 |
| p.S1090L | SKCM | 1 |
| p.Q4983H | LGG | 1 |
| p.G1700E | UCEC | 1 |
| p.Q3598H | UCEC | 1 |
| p.Q4302X | LGG | 1 |
| p.S336A | ESCA | 1 |
| p.F5012V | STAD | 1 |
| p.E2872A | SKCM | 1 |
| p.E3396D | COAD | 1 |
| p.W3754L | LUAD | 1 |
| p.R4904W | ESCA | 1 |
| p.N134D | STAD | 1 |
| p.L4669V | BLCA | 1 |
| p.F4546L | LUSC | 1 |
| p.S3798I | SARC | 1 |
| p.P3149Q | LUSC | 1 |
| p.Q2567* | OV | 1 |
| p.P3149A | LUSC | 1 |
| p.P4834S | SKCM | 1 |
| p.E2473D | HNSC | 1 |
| p.V4515L | LIHC | 1 |
| p.H4686Y | KIRC | 1 |
| p.M2028I | LIHC | 1 |
| p.V4521I | COAD | 1 |
| p.T4219M | BLCA | 1 |
| p.K2476N | UCEC | 1 |
| p.Q2315X | KIRP | 1 |
| p.Q3437R | UCEC | 1 |
| p.Q979H | LGG | 1 |
| p.S1102L | READ | 1 |
| p.T2841A | LIHC | 1 |
| p.P335T | OV | 1 |
| p.A4778T | LIHC | 1 |
| p.F2386L | KIRP | 1 |
| p.K4703T | COAD | 1 |
| p.L2466V | BLCA | 1 |
| p.Y4820X | ESCA | 1 |
| p.K3949T | STAD | 1 |
| p.R60Q | UCEC | 1 |
| p.E4081D | LUSC | 1 |
| p.V1917L | THYM | 1 |
| p.Q1126H | UCEC | 1 |
| p.W1150G | SKCM | 1 |
| p.F3570Y | COAD | 1 |
| p.W426* | BLCA | 1 |
| p.S3985F | LUAD | 1 |
| p.L4085V | BLCA | 1 |
| p.T3324S | LUAD | 1 |
| p.P506L | COAD | 1 |
| p.R4051M | LUSC | 1 |
| p.Q1369E | LUAD | 1 |
| p.E2780D | UCEC | 1 |
| p.R3162* | CESC | 1 |
| p.W1022* | UCEC | 1 |
| p.R1668H | UCEC | 1 |
| p.S4404F | SKCM | 1 |
| p.R4011W | BRCA | 1 |
| p.S1517F | LUSC | 1 |
| p.H1863Y | SKCM | 1 |
| p.P436H | LUSC | 1 |
| p.R2822I | UCEC | 1 |
| p.A1792T | STAD | 1 |
| p.Q3542K | UCEC | 1 |
| p.G2410V | LUSC | 1 |
| p.A2658P | COAD | 1 |
| p.V3695I | STAD | 1 |
| p.D4276N | SKCM | 1 |
| p.K3311N | COAD | 1 |
| p.K3519N | COAD | 1 |
| p.V1843F | LIHC | 1 |
| p.E1385D | UCEC | 1 |
| p.L3783S | COAD | 1 |
| p.R4707I | HNSC | 1 |
| p.A3195T | BRCA | 1 |
| p.V3847A | OV | 1 |
| p.Y1405X | THYM | 1 |
| p.R1833W | BRCA | 1 |
| p.D3928G | STAD | 1 |
| p.L459I | SKCM | 1 |
| p.A642V | SKCM | 1 |
| p.P4889L | SKCM | 1 |
| p.L581V | GBM | 1 |
| p.K3311T | LUAD | 1 |
| p.R3867I | UCEC | 1 |
| p.V3203I | UCEC | 1 |
| p.G4401S | SKCM | 1 |
| p.S2044I | ESCA | 1 |
| p.F2952C | BRCA | 1 |
| p.T3647I | LUAD | 1 |
| p.D3928G | LUSC | 1 |
| p.G471C | OV | 1 |
| p.D2262Y | UCEC | 1 |
| p.E4001D | LUAD | 1 |
| p.V4910M | LUSC | 1 |
| p.I1793T | LIHC | 1 |
| p.V2938I | PRAD | 1 |
| p.P4300S | BLCA | 1 |
| p.A132T | SKCM | 1 |
| p.R1668H | PRAD | 1 |
| p.R2484K | DLBC | 1 |
| p.A4796T | ESCA | 1 |
| p.E3532K | READ | 1 |
| p.L1021H | HNSC | 1 |
| p.I2260V | LUAD | 1 |
| p.Y971H | CESC | 1 |
| p.K545T | UCEC | 1 |
| p.L2058V | BRCA | 1 |
| p.S1945I | LUAD | 1 |
| p.A3643S | HNSC | 1 |
| p.E829* | SARC | 1 |
| p.L306F | LIHC | 1 |
| p.P3555T | LUAD | 1 |
| p.I770V | LGG | 1 |
| p.M887V | LGG | 1 |
| p.E799K | READ | 1 |
| p.S2433T | COAD | 1 |
| p.S3155C | UCEC | 1 |
| p.R4282H | LIHC | 1 |
| p.W2826* | LUAD | 1 |
| p.E1941Q | BLCA | 1 |
| p.L1257P | STAD | 1 |
| p.E652K | READ | 1 |
| p.K849T | PAAD | 1 |
| p.L1257F | SKCM | 1 |
| p.N4535I | HNSC | 1 |
| p.V3847M | STAD | 1 |
| p.S772C | HNSC | 1 |
| p.V2455L | OV | 1 |
| p.H1145R | BLCA | 1 |
| p.Q3721H | LUAD | 1 |
| p.E1814D | LGG | 1 |
| p.S3941F | SKCM | 1 |
| p.D3470N | COAD | 1 |
| p.Q3721K | LIHC | 1 |
| p.T2454M | BLCA | 1 |
| p.T2841K | STAD | 1 |
| p.G4143V | LUAD | 1 |
| p.W563C | GBM | 1 |
| p.E2136G | LIHC | 1 |
| p.Q1539K | BLCA | 1 |
| p.E1587* | UCEC | 1 |
| p.A3944T | PCPG | 1 |
| p.S931T | STAD | 1 |
| p.D4969N | KIRC | 1 |
| p.S4475N | SKCM | 1 |
| p.D3122N | SKCM | 1 |
| p.T3579K | UCEC | 1 |
| p.Q3359* | SKCM | 1 |
| p.L4790M | HNSC | 1 |
| p.A1262D | LUAD | 1 |
| p.A3414T | BRCA | 1 |
| p.E3543K | SKCM | 1 |
| p.A4089T | COAD | 1 |
| p.P4745L | SKCM | 1 |
| p.P675S | SKCM | 1 |
| p.L2576F | HNSC | 1 |
| p.D2613N | HNSC | 1 |
| p.V1928L | COAD | 1 |
| p.D2613V | COAD | 1 |
| p.R4590Q | SARC | 1 |
| p.S3229L | BLCA | 1 |
| p.G3731E | SARC | 1 |
| p.S1874* | BLCA | 1 |
| p.R4214Q | CESC | 1 |
| p.S3260Y | KIRC | 1 |
| p.R2258I | UCEC | 1 |
| p.C1030S | LUAD | 1 |
| p.S966F | SKCM | 1 |
| p.R1323C | OV | 1 |
| p.D1072V | DLBC | 1 |
| p.Y4822N | LIHC | 1 |
| p.I5006T | COAD | 1 |
| p.E2350K | READ | 1 |
| p.G4754R | UCEC | 1 |
| p.R1879L | LUAD | 1 |
| p.A4442T | LUSC | 1 |
| p.E1290A | STAD | 1 |
| p.N1933H | UCEC | 1 |
| p.T2150I | SKCM | 1 |
| p.V4425L | COAD | 1 |
| p.I3900M | CESC | 1 |
| p.E4847K | UCEC | 1 |
| p.K1737E | LUSC | 1 |
| p.K1140N | LUAD | 1 |
| p.V1928F | LIHC | 1 |
| p.D4606N | SKCM | 1 |
| p.E661D | UCEC | 1 |
| p.Q1934L | LUSC | 1 |
| p.D1637N | SKCM | 1 |
| p.P1271S | SKCM | 1 |
| p.R2939C | ESCA | 1 |
| p.K3014N | UCEC | 1 |
| p.T3350I | SKCM | 1 |
| p.V4788M | STAD | 1 |
| p.P2994L | SKCM | 1 |
| p.I2213M | HNSC | 1 |
| p.S3645N | KIRC | 1 |
| p.H1177Y | SKCM | 1 |
| p.H4032Q | CESC | 1 |
| p.K2173N | UCEC | 1 |
| p.S1451* | BLCA | 1 |
| p.R4590Q | UCEC | 1 |
| p.R3418L | UCEC | 1 |
| p.E377* | PRAD | 1 |
| p.L1281S | SKCM | 1 |
| p.E2572* | CESC | 1 |
| p.S1084N | COAD | 1 |
| p.T3898I | BRCA | 1 |
| p.V251L | UCEC | 1 |
| p.N3410K | HNSC | 1 |
| p.L2466V | HNSC | 1 |
| p.S3683R | GBM | 1 |
| p.V1593A | STAD | 1 |
| p.P1809A | ACC | 1 |
| p.R4365S | THYM | 1 |
| p.S4564L | BLCA | 1 |
| p.I948V | COAD | 1 |
| p.H4340R | LUAD | 1 |
| p.N340I | UCEC | 1 |
| p.T989I | BLCA | 1 |
| p.P4423S | SKCM | 1 |
| p.I178M | BLCA | 1 |
| p.S3896F | CESC | 1 |
| p.T302S | LIHC | 1 |
| p.N5031T | UCEC | 1 |
| p.S3669C | LUAD | 1 |
| p.G548C | LUAD | 1 |
| p.R2467S | SKCM | 1 |
| p.T4666A | LIHC | 1 |
| p.E163* | LUSC | 1 |
| p.Y258C | SARC | 1 |
| p.R4309H | STAD | 1 |
| p.D218N | UCEC | 1 |
| p.S2000L | LUSC | 1 |
| p.E1116G | KIRC | 1 |
| p.L2426R | STAD | 1 |
| p.P832S | SKCM | 1 |
| p.F2880L | LUSC | 1 |
| p.Y3522X | STAD | 1 |
| p.S860F | LUSC | 1 |
| p.Q4455H | LUAD | 1 |
| p.H2338Y | SKCM | 1 |
| p.L4285R | PRAD | 1 |
| p.N4413K | LIHC | 1 |
| p.M2625L | SKCM | 1 |
| p.A4758D | LUAD | 1 |
| p.S3660* | HNSC | 1 |
| p.D2314G | SKCM | 1 |
| p.K2530N | BLCA | 1 |
| p.N2033D | COAD | 1 |
| p.F3990V | BLCA | 1 |
| p.P3825L | BRCA | 1 |
| p.S967L | SKCM | 1 |
| p.D4007E | STAD | 1 |
| p.L451V | HNSC | 1 |
| p.Q3969* | HNSC | 1 |
| p.R1636T | BRCA | 1 |
| p.A104V | PCPG | 1 |
| p.R60Q | HNSC | 1 |
| p.K501N | UCEC | 1 |
| p.M4157L | COAD | 1 |
| p.V4903D | SKCM | 1 |
| p.T2538S | HNSC | 1 |
| p.E4702K | LUAD | 1 |
| p.P4616S | SKCM | 1 |
| p.D2294Y | COAD | 1 |
| p.S967* | BLCA | 1 |
| p.L3002H | READ | 1 |
| p.G3880R | READ | 1 |
| p.A2973T | PCPG | 1 |
| p.S3485L | BLCA | 1 |
| p.K1066* | LUAD | 1 |
| p.H3127Y | SKCM | 1 |
| p.Q3035P | SARC | 1 |
| p.D1376H | HNSC | 1 |
| p.E741D | READ | 1 |
| p.F2884L | BRCA | 1 |
| p.E4811K | UCEC | 1 |
| p.E3934* | LIHC | 1 |
| p.D2401H | LUAD | 1 |
| p.S1969* | CESC | 1 |
| p.L4671F | LUAD | 1 |
| p.G2704D | UCEC | 1 |
| p.F877L | BLCA | 1 |
| p.L4574I | LUSC | 1 |
| p.V3706G | STAD | 1 |
| p.A4379D | LUAD | 1 |
| p.K133E | ESCA | 1 |
| p.S3665N | ESCA | 1 |
| p.L4104P | LUAD | 1 |
| p.E1156K | SKCM | 1 |
| p.S2049I | CHOL | 1 |
| p.A500T | STAD | 1 |
| p.E2422X | CHOL | 1 |
| p.I978T | ESCA | 1 |
| p.T4795M | LUAD | 1 |
| p.A4196T | UCEC | 1 |
| p.M3366I | STAD | 1 |
| p.L4728H | BRCA | 1 |
| p.P3288S | SKCM | 1 |
| p.P4589A | LUAD | 1 |
| p.Y3039D | SKCM | 1 |
| p.V3698A | STAD | 1 |
| p.S4321L | CESC | 1 |
| p.T650S | CESC | 1 |
| p.G2732E | UCEC | 1 |
| p.L4668R | BLCA | 1 |
| p.K3904R | ESCA | 1 |
| p.M1847R | PCPG | 1 |
| p.D130N | PAAD | 1 |
| p.F3865L | HNSC | 1 |
| p.D2012Y | LUAD | 1 |
| p.L4235H | STAD | 1 |
| p.L2409I | COAD | 1 |
| p.L3404P | UCEC | 1 |
| p.G3658R | SKCM | 1 |
| p.A3989V | OV | 1 |
| p.L4551P | GBM | 1 |
| p.Q2627K | LIHC | 1 |
| p.K4448N | UCEC | 1 |
| p.S3087F | SKCM | 1 |
| p.S2110P | STAD | 1 |
| p.P1622S | HNSC | 1 |
| p.T3876I | HNSC | 1 |
| p.H1647Y | HNSC | 1 |
| p.E829K | SKCM | 1 |
| p.K4122N | LUAD | 1 |
| p.R783T | LUAD | 1 |
| p.N434T | STAD | 1 |
| p.E1905* | SARC | 1 |
| p.D193H | LUAD | 1 |
| p.E2047K | SKCM | 1 |
| p.G4827R | UCEC | 1 |
| p.D158N | UCEC | 1 |
| p.S4663L | SKCM | 1 |
| p.F3417L | LGG | 1 |
| p.Q4160E | LIHC | 1 |
| p.D1360E | SKCM | 1 |
| p.C4628* | HNSC | 1 |
| p.Q3359X | SKCM | 1 |
| p.A3718T | STAD | 1 |
| p.R4729H | STAD | 1 |
| p.D475Y | UCEC | 1 |
| p.Y3522* | STAD | 1 |
| p.E1881Q | BLCA | 1 |
| p.A1717P | LUAD | 1 |
| p.Q2805H | LGG | 1 |
| p.P186Q | SKCM | 1 |
| p.G4056R | SKCM | 1 |
| p.A295S | SARC | 1 |
| p.Q358* | BLCA | 1 |
| p.E661D | READ | 1 |
| p.T855S | LUAD | 1 |
| p.E1876Q | HNSC | 1 |
| p.M730V | UCEC | 1 |
| p.D1465Y | READ | 1 |
| p.I3988F | LUAD | 1 |
| p.W1825X | SKCM | 1 |
| p.A1792T | LUAD | 1 |
| p.Y3851F | COAD | 1 |
| p.S1607G | SKCM | 1 |
| p.S3715L | SARC | 1 |
| p.N1429K | COAD | 1 |
| p.L2576X | DLBC | 1 |
| p.E4111K | SKCM | 1 |
| p.W139L | LUAD | 1 |
| p.P3288S | HNSC | 1 |
| p.E3596D | COAD | 1 |
| p.K4706N | LUAD | 1 |
| p.V2938I | STAD | 1 |
| p.W426C | CHOL | 1 |
| p.T3895I | PAAD | 1 |
| p.L2595P | LUSC | 1 |
| p.S1310L | SKCM | 1 |
| p.Q3123H | BRCA | 1 |
| p.L2441F | CHOL | 1 |
| p.T398I | LGG | 1 |
| p.A1792T | SKCM | 1 |
| p.P671S | SKCM | 1 |
| p.K1246N | UCEC | 1 |
| p.Y4802* | PRAD | 1 |
| p.T2538K | STAD | 1 |
| p.Y2559H | HNSC | 1 |
| p.R3360I | UCEC | 1 |
| p.F2237S | STAD | 1 |
| p.S3669C | LUSC | 1 |
| p.L4052R | SKCM | 1 |
| p.E1789G | PAAD | 1 |
| p.C4054R | BLCA | 1 |
| p.H3096R | LUSC | 1 |
| p.I1077N | SKCM | 1 |
| p.S232F | BLCA | 1 |
| p.N2806H | STAD | 1 |
| p.P2593Q | COAD | 1 |
| p.L4669F | SKCM | 1 |
| p.R4533H | UCEC | 1 |
| p.S4570F | SKCM | 1 |
| p.V1477I | PAAD | 1 |
| p.L4256R | UCS | 1 |
| p.D4000H | LUAD | 1 |
| p.A1010T | READ | 1 |
| p.F1424L | LIHC | 1 |
| p.W2950* | ACC | 1 |
| p.A2980V | KIRC | 1 |
| p.K1923N | LGG | 1 |
| p.D3165H | LUAD | 1 |
| p.R1076C | SKCM | 1 |
| p.Q875L | UVM | 1 |
| p.D4739Y | ESCA | 1 |
| p.M129I | ESCA | 1 |
| p.V3431M | UCEC | 1 |
| p.L3002R | LUAD | 1 |
| p.E1479D | LIHC | 1 |
| p.R3162Q | SKCM | 1 |
| p.K477E | COAD | 1 |
| p.I1543M | LGG | 1 |
| p.P675L | BLCA | 1 |
| p.N1640K | STAD | 1 |
| p.D880N | SKCM | 1 |
| p.W438* | UCEC | 1 |
| p.E851K | SKCM | 1 |
| p.E4905K | SKCM | 1 |
| p.D3259N | UCEC | 1 |
| p.R4826L | LUAD | 1 |
| p.A3142V | COAD | 1 |
| p.F3719V | HNSC | 1 |
| p.R4025H | BLCA | 1 |
| p.M717I | SKCM | 1 |
| p.A1206S | LUAD | 1 |
| p.M2927T | LGG | 1 |
| p.N2054K | PRAD | 1 |
| p.A122T | PAAD | 1 |
| p.R3416C | PRAD | 1 |
| p.V4659M | STAD | 1 |
| p.R4043H | BRCA | 1 |
| p.G4474C | UCEC | 1 |
| p.Y971F | SKCM | 1 |
| p.W1825* | SKCM | 1 |
| p.K629R | COAD | 1 |
| p.N2348S | LUSC | 1 |
| p.G4938D | LUAD | 1 |
| p.L2797V | STAD | 1 |
| p.K2476E | THYM | 1 |
| p.E904* | LUAD | 1 |
| p.Q1681X | SKCM | 1 |
| p.M3074T | LUAD | 1 |
| p.N2995T | LGG | 1 |
| p.G411D | STAD | 1 |
| p.L725V | SKCM | 1 |
| p.A3414T | PRAD | 1 |
| p.L3427V | BLCA | 1 |
| p.S735L | CESC | 1 |
| p.S1244L | SKCM | 1 |
| p.L2576* | LIHC | 1 |
| p.S2879N | STAD | 1 |
| p.K1038N | OV | 1 |
| p.A2159V | COAD | 1 |
| p.K3949M | LIHC | 1 |
| p.L1507V | COAD | 1 |
| p.K943T | COAD | 1 |
| p.D2800N | LUAD | 1 |
| p.R666I | UCEC | 1 |
| p.Q423R | BLCA | 1 |
| p.R3375I | UCEC | 1 |
| p.E3136* | ACC | 1 |
| p.S4573* | BLCA | 1 |
| p.E1254D | STAD | 1 |
| p.P882H | STAD | 1 |
| p.M1169V | LIHC | 1 |
| p.Q2919* | LUAD | 1 |
| p.C1888Y | THYM | 1 |
| p.V5005L | LUAD | 1 |
| p.A5000S | KIRC | 1 |
| p.A2412G | GBM | 1 |
| p.P1929S | SKCM | 1 |
| p.P3325S | HNSC | 1 |
| p.P3504S | SKCM | 1 |
| p.W1440X | STAD | 1 |
| p.I4943V | KIRP | 1 |
| p.N4722H | KIRP | 1 |
| p.L159I | PRAD | 1 |
| p.S3258R | THYM | 1 |
| p.S4010F | SKCM | 1 |
| p.D2137N | KIRP | 1 |
| p.F3653L | SKCM | 1 |
| p.W4896C | ESCA | 1 |
| p.R3167Q | SKCM | 1 |
| p.H3411Y | HNSC | 1 |
| p.A1018S | ESCA | 1 |
| p.P176L | PRAD | 1 |
| p.D4133N | SKCM | 1 |
| p.S3104F | SKCM | 1 |
| p.S2330* | BLCA | 1 |
| p.E1683* | LUSC | 1 |
| p.N1460K | LIHC | 1 |
| p.G3753C | LUAD | 1 |
| p.R1833Q | KIRC | 1 |
| p.Q1681* | SKCM | 1 |
| p.P4008T | LUAD | 1 |
| p.R3497Q | READ | 1 |
| p.I3488M | BLCA | 1 |
| p.H4914N | CESC | 1 |
| p.L4536V | STAD | 1 |
| p.S3561N | ESCA | 1 |
| p.E3083D | LUAD | 1 |
| p.F1819S | SKCM | 1 |
| p.G3240D | UCEC | 1 |
| p.T3346S | BLCA | 1 |
| p.T2517K | COAD | 1 |
| p.A1491T | PAAD | 1 |
| p.I3098F | BRCA | 1 |
| p.S4349* | ESCA | 1 |
| p.I2522T | LUAD | 1 |
| p.W802* | BLCA | 1 |
| p.W802* | LUAD | 1 |
| p.N1972H | UCEC | 1 |
| p.R2177T | CESC | 1 |
| p.T4424I | HNSC | 1 |
| p.S1410Y | LUSC | 1 |
| p.I1157M | LUAD | 1 |
| p.I2430T | BRCA | 1 |
| p.E824* | BLCA | 1 |
| p.V560A | COAD | 1 |
| p.K277* | LIHC | 1 |
| p.R4728* | SKCM | 1 |
| p.A2973V | LIHC | 1 |
| p.P2994S | SKCM | 1 |
| p.R1373H | UCEC | 1 |
| p.S1857N | COAD | 1 |
| p.L4911M | COAD | 1 |
| p.F4658I | STAD | 1 |
| p.P3790L | SKCM | 1 |
| p.H1827Y | LUAD | 1 |
| p.H4167Y | LIHC | 1 |
| p.I2383T | HNSC | 1 |
| p.L2044R | OV | 1 |
| p.M1169T | LIHC | 1 |
| p.E1881K | SKCM | 1 |
| p.A2368D | LIHC | 1 |
| p.V4515A | LUSC | 1 |
| p.Q2811K | LUAD | 1 |
| p.D130H | KIRC | 1 |
| p.E1905V | SARC | 1 |
| p.M2326I | UCEC | 1 |
| p.G1178S | SKCM | 1 |
| p.L1164F | SKCM | 1 |
| p.I2614T | READ | 1 |
| p.S1865C | HNSC | 1 |
| p.V3932I | LUAD | 1 |
| p.E3804* | UCEC | 1 |
| p.L2591S | STAD | 1 |
| p.E940D | COAD | 1 |
| p.S4858R | HNSC | 1 |
| p.L725H | SKCM | 1 |
| p.A4524T | PRAD | 1 |
| p.S2112T | LUAD | 1 |
| p.R452* | BRCA | 1 |
| p.R4282H | COAD | 1 |
| p.D2753N | KIRP | 1 |
| p.K1166N | LUSC | 1 |
| p.G4384E | SKCM | 1 |
| p.E1359K | SKCM | 1 |
| p.Q3972H | LIHC | 1 |
| p.G1594S | KIRC | 1 |
| p.I3077T | STAD | 1 |
| p.L2274I | LUAD | 1 |
| p.G1711V | PCPG | 1 |
| p.I842N | ESCA | 1 |
| p.R3162L | ESCA | 1 |
| p.A3116V | LUAD | 1 |
| p.M2082I | UCS | 1 |
| p.R847I | STAD | 1 |
| p.L2576X | LIHC | 1 |
| p.A926S | SARC | 1 |
| p.A3553T | COAD | 1 |
| p.P1736S | SKCM | 1 |
| p.F740C | STAD | 1 |
| p.D53N | UCEC | 1 |
| p.P2060H | COAD | 1 |
| p.I3535L | ESCA | 1 |
| p.Y4188H | HNSC | 1 |
| p.L1750F | CHOL | 1 |
| p.L3439Q | LUAD | 1 |
| p.R4781S | UCEC | 1 |
| p.S1697G | LUSC | 1 |
| p.Q713* | BRCA | 1 |
| p.G115* | UCEC | 1 |
| p.L1660F | LUAD | 1 |
| p.W1440* | STAD | 1 |
| p.R1879Q | UCEC | 1 |
| p.P4254S | SKCM | 1 |
| p.R142Q | SKCM | 1 |
| p.F3671L | STAD | 1 |
| p.D2520N | SKCM | 1 |
| Top |
| TissGeneCNV for ABCA13 |
| Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
 |
| Top |
| TissGeneFusions for ABCA13 |
| Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
| Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
| Chimerdb3.0 | ChiTaRs | NA | BF895730 | ALOX5-ABCA13 | chr10:45922547 | chr7:48626837 | |
| Chimerdb3.0 | ChiTaRs | NA | BF898207 | ABCA13-ABCA13 | chr7:48399373 | chr7:48398936 | |
| Chimerdb3.0 | ChiTaRs | NA | BI022466 | ABCA13-VEPH1 | chr7:48529412 | chr3:157082111 | |
| Chimerdb3.0 | FusionScan | LUSC | TCGA-90-7769-01A | ABCA13-BLVRA | Out-of-Frame | chr7:48211149 | chr7:43843274 |
| TCGAfusionPortal | PRADA | BRCA | TCGA-A8-A091-01A | C2CD3-ABCA13 | Out-of-frame | Chr11:73843889 | Chr7:48520633 |
| TCGAfusionPortal | PRADA | LUAD | TCGA-44-A479-01A | KIAA1324L-ABCA13 | Out-of-frame | Chr7:86547758 | Chr7:48308577 |
| Top |
| TissGeneNet for ABCA13 |
| Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
| BRCA (tumor) | BRCA (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| COAD (tumor) | COAD (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| HNSC (tumor) | HNSC (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| KICH (tumor) | KICH (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| KIRC (tumor) | KIRC (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| KIRP (tumor) | KIRP (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| LIHC (tumor) | LIHC (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| LUAD (tumor) | LUAD (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| LUSC (tumor) | LUSC (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| PRAD (tumor) | PRAD (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| STAD (tumor) | STAD (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| THCA (tumor) | THCA (normal) |
| ABCA13, CUL3, APOA1, APOA2 (tumor) | ABCA13, CUL3, APOA1, APOA2 (normal) |
 |  |
| Top |
| TissGeneProg for ABCA13 |
| Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
 |
| Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
 |
| Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
 |
| Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
 |
| Top |
| TissGeneClin for ABCA13 |
| TissGeneDrug for ABCA13 |
| Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
| DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Top |
| TissGeneDisease for ABCA13 |
| Disease information associated with TissGene (DisGeNet, 2016-06-01) |
| Disease ID | Disease name | # pubmeds | Source |
| umls:C0005586 | Bipolar Disorder | 1 | BeFree,GAD |
| umls:C0007134 | Renal Cell Carcinoma | 1 | BeFree |
| umls:C0009404 | Colorectal Neoplasms | 1 | CTD_human |
| umls:C0011570 | Mental Depression | 1 | BeFree,GAD |
| umls:C0011581 | Depressive disorder | 1 | BeFree |
| umls:C0036341 | Schizophrenia | 1 | BeFree,GAD |
| umls:C0040336 | Tobacco Use Disorder | 1 | GAD |
| umls:C0206701 | Cystadenocarcinoma, Serous | 1 | BeFree |
| umls:C0242656 | Disease Progression | 1 | CTD_human |
| umls:C1335177 | Ovarian Serous Adenocarcinoma | 1 | BeFree |
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