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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for DBH
check button Gene summary
Basic gene informationGene symbolDBH
Gene namedopamine beta-hydroxylase (dopamine beta-monooxygenase)
SynonymsDBM
CytomapUCSC genome browser: 9q34
Type of geneprotein-coding
RefGenesNM_000787.3,
Descriptiondopamine beta-hydroxylase
Modification date20141222
dbXrefs MIM : 609312
HGNC : HGNC
Ensembl : ENSG00000123454
HPRD : 01963
Vega : OTTHUMG00000020878
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_DBH
BioGPS: 1621
PathwayNCI Pathway Interaction Database: DBH
KEGG: DBH
REACTOME: DBH
Pathway Commons: DBH
ContextiHOP: DBH
ligand binding site mutation search in PubMed: DBH
UCL Cancer Institute: DBH
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesHPA,TiGER
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)BrainAdrenal gland
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)GBM,LGGPCPG,ACC
Reference showing the relevant tissue of DBH
Description by TissGene annotationsProtective TissGene in RFS
Have significant anti-correlated miRNA
TissgsKTS
Fused withTSGene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for DBH

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LUSC-1.88460293-0.060555871-1.8240470591.97E-139.86E-13
KIRC-1.2364804620.29540426-1.5318847226.62E-194.68E-18
KICH-2.6952828510.371553149-3.0668368.43E-162.09E-14
LIHC0.9746791495.930451149-4.9557721.47E-231.92E-21
THCA-0.440330580.592889759-1.0332203394.66E-071.85E-06
KIRP-1.4586318510.826808774-2.2854406251.38E-091.26E-08


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TissGene-miRNA for DBH

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples
THYMhsa-miR-204-5pMIMAT00002650.00033-0.32122


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TissGeneMut for DBH
TissGeneSNV for DBH

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.E265KSKCM2
p.V370AUCEC1
p.R138KUCEC1
p.L386FSKCM1
p.P219SSKCM1
p.W63RLUAD1
p.W577XSKCM1
p.V276IPRAD1
p.G417ESKCM1
p.R358QPRAD1
p.P200RLGG1
p.D427NSKCM1
p.A270TLGG1
p.H412QBRCA1
p.D106NCOAD1
p.R92HUCEC1
p.R329HBLCA1
p.E215AUCS1
p.P52LSKCM1
p.T498KLUAD1
p.A36SLUAD1
p.E250KSKCM1
p.G39DSKCM1
p.R350LESCA1
p.D345NUCEC1
p.G459EHNSC1
p.P55QLUSC1
p.D158NKIRC1
p.S9RLUAD1
p.P219SSARC1
p.A211VPRAD1
p.V276IPAAD1
p.A71VSKCM1
p.G316SLUAD1
p.I234VBLCA1
p.D472YACC1
p.S45NBLCA1
p.D274NSKCM1
p.G323WLUAD1
p.S209*BLCA1
p.E204KSKCM1
p.M89IHNSC1
p.P42LSKCM1
p.Q128*LGG1
p.A35DLUAD1
p.V85FLUAD1
p.S9ILUAD1
p.S40*LUAD1
p.R359CUCEC1
p.Q497HUCEC1
p.P48SSKCM1
p.A506SLUAD1
p.R572GHNSC1
p.R296HUCEC1
p.T228ISKCM1
p.V253ILUSC1
p.W104*SKCM1
p.V31FACC1
p.G39SSKCM1
p.R243WHNSC1
p.S587FSKCM1
p.M273ISKCM1
p.A3TSTAD1
p.G363ESKCM1
p.W104XSKCM1
p.R350HUCEC1
p.R448HGBM1
p.E486XTHYM1
p.R572HTHYM1
p.L197FOV1
p.R326KESCA1
p.A113VCESC1
p.L299MUCS1
p.A506TESCA1
p.P224HUCEC1
p.D345NCOAD1
p.G368*STAD1
p.W577*SKCM1
p.D106NSKCM1
p.F558LHNSC1
p.S40LSTAD1
p.I223TCOAD1
p.Y49CPRAD1
p.A315VPRAD1
p.A270TSTAD1
p.R178QBRCA1
p.P42THNSC1
p.V276IBRCA1
p.P140THNSC1
p.A408TSTAD1
p.G171RSKCM1
p.A113VSTAD1
p.E525GKIRC1


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TissGeneCNV for DBH

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for DBH

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0TopHat-FusionSARCTCGA-DX-A23Z-01ACIZ1-DBHIn-Framechr9:130947825chr9:136521658


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TissGeneNet for DBH

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
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COAD (tumor)COAD (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
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HNSC (tumor)HNSC (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
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KICH (tumor)KICH (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
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KIRC (tumor)KIRC (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
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KIRP (tumor)KIRP (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
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LIHC (tumor)LIHC (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
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LUAD (tumor)LUAD (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
bullet pointbullet point
LUSC (tumor)LUSC (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
bullet pointbullet point
PRAD (tumor)PRAD (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
bullet pointbullet point
STAD (tumor)STAD (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
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THCA (tumor)THCA (normal)
DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (tumor)DBH, SP1, FOS, CREB1, YY1, PHOX2A, ITSN1 (normal)
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TissGeneProg for DBH

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for DBH
TissGeneDrug for DBH

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status
DB00822DisulfiramInhibitorSmall moleculeApproved
DB00988DopamineLigandSmall moleculeApproved
DB00126Vitamin CSmall moleculeApproved|Nutraceutical


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TissGeneDisease for DBH

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C1263846Attention deficit hyperactivity disorder30BeFree,GAD
umls:C0036341Schizophrenia25BeFree,GAD
umls:C0001973Alcoholic Intoxication, Chronic9BeFree,GAD
umls:C0027819Neuroblastoma9BeFree,CTD_human
umls:C0149931Migraine Disorders8BeFree,GAD
umls:C0600427Cocaine Dependence7BeFree
umls:C0700095Central neuroblastoma6BeFree
umls:C0871189Psychotic symptom6BeFree
umls:C0004352Autistic Disorder5BeFree,GAD
umls:C0013423Dystonia Musculorum Deformans5BeFree
umls:C0028043Nicotine Dependence5BeFree,GAD
umls:C0031511Pheochromocytoma5BeFree,CTD_human
umls:C0040517Gilles de la Tourette syndrome5BeFree,GAD
umls:C1456784Paranoia5BeFree,CTD_human,GAD
umls:C0004936Mental disorders4BeFree
umls:C0005586Bipolar Disorder4BeFree
umls:C0030567Parkinson Disease4BeFree,GAD,LHGDN
umls:C0003944As If Personality3GAD
umls:C0011581Depressive disorder3BeFree,RGD
umls:C0020538Hypertensive disease3BeFree,GAD,LHGDN,RGD
umls:C0022716Menkes Kinky Hair Syndrome3BeFree
umls:C0041696Unipolar Depression3BeFree
umls:C0152115Lingual-Facial-Buccal Dyskinesia3BeFree
umls:C0393911Pure Autonomic Failure3BeFree
umls:C0525045Mood Disorders3BeFree
umls:C0686347Tardive Dyskinesia3BeFree
umls:C1269683Major Depressive Disorder3BeFree
umls:C0003469Anxiety Disorders2BeFree
umls:C0011570Mental Depression2BeFree
umls:C0013421Dystonia2BeFree
umls:C0023434Chronic Lymphocytic Leukemia2BeFree
umls:C0030975Perceptual Disorders2GAD
umls:C0038436Post-Traumatic Stress Disorder2BeFree,LHGDN
umls:C0085580Essential Hypertension2BeFree
umls:C0154723Migraine with Aura2BeFree,GAD
umls:C0221765Chronic schizophrenia2BeFree
umls:C0236663Alcohol withdrawal syndrome2BeFree,GAD
umls:C0342687dopamine beta hydroxylase deficiency2BeFree,CTD_human,MGD,ORPHANET,UNIPROT
umls:C0393593Dystonia Disorders2BeFree
umls:C1275808Congenital central hypoventilation2BeFree
umls:C1839839MAJOR AFFECTIVE DISORDER 22BeFree
umls:C0001957Alcohol Withdrawal Delirium1BeFree
umls:C0002395Alzheimer's Disease1GAD
umls:C0003123Anorexia1RGD
umls:C0003431Antisocial Personality Disorder1BeFree
umls:C0006111Brain Diseases1BeFree
umls:C0007222Cardiovascular Diseases1BeFree
umls:C0007786Brain Ischemia1RGD
umls:C0011573Endogenous depression1BeFree
umls:C0011853Diabetes Mellitus, Experimental1RGD
umls:C0014130Endocrine System Diseases1GAD
umls:C0014544Epilepsy1BeFree
umls:C0018801Heart failure1BeFree
umls:C0018802Congestive heart failure1BeFree
umls:C0020541Hypertension, Portal1RGD
umls:C0022658Kidney Diseases1BeFree
umls:C0023893Liver Cirrhosis, Experimental1RGD
umls:C0025202melanoma1GAD
umls:C0025269Multiple Endocrine Neoplasia Type 2b1BeFree
umls:C0025322Premature Menopause1BeFree
umls:C0026267Mitral Valve Prolapse Syndrome1BeFree
umls:C0026769Multiple Sclerosis1GAD
umls:C0027765nervous system disorder1BeFree
umls:C0031117Peripheral Neuropathy1CTD_human
umls:C0032002Pituitary Diseases1BeFree
umls:C0033975Psychotic Disorders1BeFree
umls:C0038454Cerebrovascular accident1GAD
umls:C0038525Subarachnoid Hemorrhage1GAD
umls:C0038586Substance Use Disorders1BeFree
umls:C0040336Tobacco Use Disorder1GAD
umls:C0041341Tuberous Sclerosis1BeFree
umls:C0041671Attention Deficit Disorder1BeFree
umls:C0043094Weight Gain1GAD
umls:C0085215Ovarian Failure, Premature1BeFree
umls:C0087169Withdrawal Symptoms1BeFree
umls:C0151699Intracranial Hemorrhages1GAD
umls:C0270458Severe major depression with psychotic features1BeFree
umls:C0524851Neurodegenerative Disorders1BeFree
umls:C0679225multiple pathologies1BeFree
umls:C0687131Psychoticism1GAD
umls:C0743072Depression, psychotic1BeFree
umls:C0747249Paranoid ideation1BeFree,GAD
umls:C0751265Learning Disabilities1BeFree
umls:C0752207Familial Dystonia1BeFree
umls:C0752347Lewy Body Disease1BeFree
umls:C1145628Autonomic nervous system disorders1BeFree
umls:C1270972Mild cognitive disorder1BeFree
umls:C1299624Postural Orthostatic Tachycardia Syndrome1BeFree
umls:C1834570Myoclonic dystonia1BeFree
umls:C1842981NEUROTICISM1BeFree
umls:C2911647Weight Gain Adverse Event1GAD
umls:C2937358Cerebral Hemorrhage1GAD
umls:C3160718PARKINSON DISEASE, LATE-ONSET0CTD_human