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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for GATA4
check button Gene summary
Basic gene informationGene symbolGATA4
Gene nameGATA binding protein 4
SynonymsASD2|TACHD|TOF|VSD1
CytomapUCSC genome browser: 8p23.1-p22
Type of geneprotein-coding
RefGenesNM_002052.3,
DescriptionGATA-binding factor 4transcription factor GATA-4
Modification date20141207
dbXrefs MIM : 600576
HGNC : HGNC
Ensembl : ENSG00000136574
HPRD : 08994
Vega : OTTHUMG00000090800
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_GATA4
BioGPS: 2626
PathwayNCI Pathway Interaction Database: GATA4
KEGG: GATA4
REACTOME: GATA4
Pathway Commons: GATA4
ContextiHOP: GATA4
ligand binding site mutation search in PubMed: GATA4
UCL Cancer Institute: GATA4
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Ovary
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)OV
Reference showing the relevant tissue of GATA4
Description by TissGene annotationsFused withTSGene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0045893positive regulation of transcription, DNA-templated24000169
GO:0045944positive regulation of transcription from RNA polymerase II promoter21330551
GO:0060575intestinal epithelial cell differentiation9566909
GO:0045893positive regulation of transcription, DNA-templated24000169
GO:0045944positive regulation of transcription from RNA polymerase II promoter21330551
GO:0060575intestinal epithelial cell differentiation9566909


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TissGeneExp for GATA4

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
BRCA-1.464243037-2.7392149671.274971931.53E-074.53E-07
THCA-2.943310224-1.7775848-1.1657254248.31E-094.19E-08
KIRP-1.763925055-2.929353181.1654281250.003410.008328126
HNSC-0.761658194-2.520360521.7587023260.0004810.001797757


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TissGene-miRNA for GATA4

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for GATA4
TissGeneSNV for GATA4

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.G392DSTAD1
p.E216VLUAD1
p.P290SCOAD1
p.G242SUCEC1
p.P257LSKCM1
p.G249SSKCM1
p.S377IPRAD1
p.H397YSKCM1
p.T366MCOAD1
p.L432SSARC1
p.R267*GBM1
p.T233MPCPG1
p.Q275HLUAD1
p.P290HACC1
p.D231YLUAD1
p.T355SSTAD1
p.D210NPAAD1
p.R283CLUAD1
p.S344IACC1
p.D210NSKCM1
p.A412VKIRP1
p.P226TLUAD1
p.G393RSKCM1
p.G249SLGG1
p.A264TGBM1
p.P334SSKCM1
p.R230*LUAD1
p.A388VSTAD1
p.A343SBLCA1
p.R362CUCEC1
p.G221WLUAD1
p.A411VUCEC1
p.D210ASKCM1
p.G391DSTAD1
p.T366MUCS1
p.S377GCOAD1
p.R265HCOAD1
p.A6VSTAD1


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TissGeneCNV for GATA4

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for GATA4

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNABM850490GATA4-GATA4chr8:11617053chr8:11616345
Chimerdb3.0FusionScanESCATCGA-2H-A9GO-01AGATA4-CTSBCDS-5'UTRchr8:11566437chr8:11710988
Chimerdb3.0FusionScanESCATCGA-L5-A4OJ-01AGATA4-TRIB1Out-of-Framechr8:11566437chr8:126448247
Chimerdb3.0TopHat-FusionLGGTCGA-HT-7854-01ANCOR2-GATA4Out-of-Framechr12:124862782chr8:11606424
Chimerdb3.0TopHat-FusionLGGTCGA-HT-7854-01ANCOR2-GATA4In-Framechr12:124862782chr8:11606427
TCGAfusionPortalPRADALGGTCGA-HT-7854-01ANCOR2-GATA4In-frameChr12:124862783Chr8:11606428
TCGAfusionPortalPRADALUSCTCGA-43-6143-01AAC135352.2-GATA45UTR-CDSChr8:12848540Chr8:11606428
TCGAfusionPortalPRADALUSCTCGA-43-6143-01AAC135352.1-GATA43UTR-5UTRChr8:12848509Chr8:11606425
TCGAfusionPortalPRADAOVTCGA-09-2051-01AFDFT1-GATA4In-frameChr8:11667359Chr8:11612555


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TissGeneNet for GATA4

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
GATA4, SP1, MAPK1, HDAC2, MDC1, COL1A2, SRF, ID2, SUZ12, IL5, PIAS1, ID3, KDM6A, CYP17A1, EPHX1, NFATC4, ZBTB3, MUC4, JARID2, ID1, HSD3B1 (tumor)GATA4, JUN, FOS, AR, MAPK3, MDC1, SRF, ID2, IL5, JUND, KDM6A, CYP17A1, EPHX1, NFATC4, NR5A1, MUC4, JARID2, ID1, HAND2, ALX4, HAMP (normal)
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COAD (tumor)COAD (normal)
GATA4, SP1, FOS, MAPK1, HDAC2, EP300, MAPK3, ID2, JUND, MED1, PIAS1, ID3, NKX2-5, KDM6A, EPHX1, KLF13, ZBTB3, JARID2, ALX4, TBX5, HSD3B1 (tumor)GATA4, JUN, MAPK1, HDAC2, EP300, COL1A2, SRF, ID2, CRIP2, JUND, PIAS1, ZFPM2, ID3, NKX2-5, EPHX1, NFATC4, JARID2, ID1, HAND2, ALX4, HSD3B1 (normal)
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HNSC (tumor)HNSC (normal)
GATA4, SP1, MAPK1, EP300, MDC1, COL1A2, SRF, ID2, F10, ZFPM2, ID3, NKX2-5, KDM6A, EPHX1, NFATC4, NR5A1, ZBTB3, MUC4, HAND2, TBX5, HSD3B1 (tumor)GATA4, JUN, HDAC2, MDC1, SRF, CRIP2, IL5, F10, JUND, MED1, ZFPM2, NKX2-5, CYP17A1, EPHX1, NFATC4, NR5A1, ZBTB3, MUC4, HAND2, ALX4, TBX5 (normal)
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KICH (tumor)KICH (normal)
GATA4, JUN, FOS, HDAC2, AR, MAPK3, MDC1, COL1A2, ID2, CRIP2, F10, JUND, PIAS1, ZFPM2, ID3, KDM6A, NR5A1, ZBTB3, ID1, HAND2, EZH1 (tumor)GATA4, JUN, FOS, MAPK1, HDAC2, AR, EP300, MAPK3, MDC1, COL1A2, SUZ12, CRIP2, MED1, ZFPM2, ID3, KDM6A, CYP17A1, NR5A1, MUC4, ID1, HSD3B1 (normal)
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KIRC (tumor)KIRC (normal)
GATA4, FOS, HDAC2, AR, MAPK3, MDC1, COL1A2, SRF, ID2, IL5, PIAS1, ID3, NKX2-5, NR5A1, MUC4, JARID2, ID1, HAND2, ALX4, HAMP, TBX5 (tumor)GATA4, SP1, MAPK1, HDAC2, AR, EP300, COL1A2, CRIP2, PIAS1, ZFPM2, NKX2-5, KLF13, NFATC4, NR5A1, MUC4, HAND2, ALX4, EZH1, HAMP, TBX5, HSD3B1 (normal)
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KIRP (tumor)KIRP (normal)
GATA4, SP1, HDAC2, EP300, COL1A2, SRF, F10, JUND, MED1, NKX2-5, KDM6A, CYP17A1, KLF13, NFATC4, MUC4, ID1, HAND2, EZH1, HAMP, TBX5, HSD3B1 (tumor)GATA4, SP1, JUN, FOS, HDAC2, COL1A2, ID2, SUZ12, F10, MED1, ZFPM2, NKX2-5, KDM6A, EPHX1, KLF13, ZBTB3, MUC4, HAND2, ALX4, EZH1, TBX5 (normal)
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LIHC (tumor)LIHC (normal)
GATA4, JUN, FOS, MAPK3, COL1A2, JUND, ZFPM2, ID3, NKX2-5, KDM6A, CYP17A1, EPHX1, KLF13, NFATC4, NR5A1, ZBTB3, JARID2, ID1, HAND2, ALX4, EZH1 (tumor)GATA4, SP1, JUN, MAPK1, HDAC2, EP300, MDC1, ID2, SUZ12, CRIP2, JUND, MED1, ID3, KDM6A, CYP17A1, NFATC4, NR5A1, ZBTB3, JARID2, EZH1, HSD3B1 (normal)
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LUAD (tumor)LUAD (normal)
GATA4, JUN, FOS, COL1A2, SRF, ID2, SUZ12, F10, JUND, PIAS1, ZFPM2, ID3, NKX2-5, NFATC4, ZBTB3, HAND2, ALX4, EZH1, HAMP, TBX5, HSD3B1 (tumor)GATA4, SP1, JUN, FOS, MAPK1, MAPK3, COL1A2, SRF, CRIP2, F10, JUND, PIAS1, ZFPM2, NKX2-5, KDM6A, EPHX1, NFATC4, MUC4, HAND2, ALX4, TBX5 (normal)
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LUSC (tumor)LUSC (normal)
GATA4, SP1, JUN, COL1A2, SRF, ID2, JUND, ZFPM2, ID3, KDM6A, CYP17A1, NFATC4, NR5A1, ZBTB3, JARID2, ID1, HAND2, EZH1, HAMP, TBX5, HSD3B1 (tumor)GATA4, SP1, JUN, EP300, MAPK3, ID2, SUZ12, CRIP2, F10, JUND, MED1, NKX2-5, KDM6A, CYP17A1, NR5A1, MUC4, JARID2, ID1, HAND2, ALX4, EZH1 (normal)
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PRAD (tumor)PRAD (normal)
GATA4, SP1, MAPK1, EP300, MAPK3, MDC1, SUZ12, CRIP2, F10, MED1, PIAS1, ID3, CYP17A1, EPHX1, KLF13, NFATC4, JARID2, ID1, HAND2, ALX4, TBX5 (tumor)GATA4, SP1, JUN, HDAC2, EP300, MAPK3, MDC1, ID2, SUZ12, CRIP2, F10, JUND, MED1, ID3, KDM6A, EPHX1, KLF13, NR5A1, ZBTB3, MUC4, EZH1 (normal)
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STAD (tumor)STAD (normal)
GATA4, SP1, FOS, MAPK1, AR, EP300, MAPK3, ID2, SUZ12, IL5, F10, JUND, MED1, PIAS1, ZFPM2, ID3, CYP17A1, JARID2, ID1, EZH1, TBX5 (tumor)GATA4, FOS, MAPK1, AR, EP300, MAPK3, MDC1, SUZ12, F10, JUND, MED1, ZFPM2, NKX2-5, CYP17A1, NFATC4, MUC4, ID1, EZH1, HAMP, TBX5, HSD3B1 (normal)
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THCA (tumor)THCA (normal)
GATA4, FOS, HDAC2, MAPK3, SRF, SUZ12, IL5, JUND, MED1, ID3, KDM6A, CYP17A1, EPHX1, KLF13, NR5A1, ZBTB3, JARID2, ID1, HAND2, ALX4, HAMP (tumor)GATA4, MAPK1, AR, MDC1, COL1A2, SRF, ID2, F10, ZFPM2, ID3, NKX2-5, EPHX1, NR5A1, ZBTB3, JARID2, HAND2, ALX4, EZH1, HAMP, TBX5, HSD3B1 (normal)
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TissGeneProg for GATA4

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for GATA4
TissGeneDrug for GATA4

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for GATA4

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0018798Congenital Heart Defects25BeFree,GAD,RGD
umls:C0152021Congenital heart disease21BeFree
umls:C0010068Coronary heart disease19BeFree
umls:C0018818Ventricular Septal Defects16BeFree,GAD
umls:C0018817Atrial Septal Defects15BeFree,GAD,LHGDN
umls:C0039685Tetralogy of Fallot13BeFree,CLINVAR,GAD,LHGDN,ORPHANET,UNIPROT
umls:C0018816Heart Septal Defects12BeFree,GAD
umls:C0596263Carcinogenesis9BeFree
umls:C0018799Heart Diseases7BeFree,GAD,LHGDN
umls:C0235833Congenital diaphragmatic hernia7BeFree,CTD_human,MGD
umls:C0741916Cardiac defects7BeFree
umls:C0024623Malignant neoplasm of stomach6BeFree
umls:C0699791Stomach Carcinoma6BeFree
umls:C1842778Atrial septal defect 26CLINVAR,CTD_human,MGD,UNIPROT
umls:C0000768Congenital Abnormality5BeFree
umls:C0006142Malignant neoplasm of breast5BeFree
umls:C0018801Heart failure5BeFree
umls:C0018802Congestive heart failure5BeFree
umls:C0029925Ovarian Carcinoma5BeFree
umls:C0001973Alcoholic Intoxication, Chronic4BeFree,CTD_human,GAD
umls:C0007193Cardiomyopathy, Dilated4BeFree
umls:C0018206granulosa cell tumor4BeFree,LHGDN
umls:C0027627Neoplasm Metastasis4BeFree
umls:C0034089Pulmonary Valve Stenosis4BeFree
umls:C0678222Breast Carcinoma4BeFree
umls:C1140680Malignant neoplasm of ovary4BeFree
umls:C1956257Pulmonary Stenosis4BeFree
umls:C0027051Myocardial Infarction3BeFree,CTD_human,RGD
umls:C3280777VENTRICULAR SEPTAL DEFECT 13CLINVAR,UNIPROT
umls:C0001418Adenocarcinoma2BeFree
umls:C0007222Cardiovascular Diseases2BeFree
umls:C0009402Colorectal Carcinoma2BeFree
umls:C0009404Colorectal Neoplasms2CTD_human,LHGDN
umls:C0013080Down Syndrome2BeFree
umls:C0018800Cardiomegaly2CTD_human
umls:C0041207Truncus Arteriosus, Persistent2BeFree
umls:C0205851Germ cell tumor2BeFree
umls:C0232197Fibrillation2BeFree
umls:C0235974Pancreatic carcinoma2BeFree
umls:C0340427Familial dilated cardiomyopathy2BeFree
umls:C0340489Lone atrial fibrillation2BeFree
umls:C0346647Malignant neoplasm of pancreas2BeFree
umls:C0850666Helicobacter pylori infection2BeFree
umls:C0878544Cardiomyopathies2BeFree
umls:C0919267ovarian neoplasm2BeFree
umls:C1527249Colorectal Cancer2BeFree
umls:C1709246Non-Neoplastic Disorder2BeFree
umls:C1956346Coronary Artery Disease2BeFree
umls:C0001624Adrenal Gland Neoplasms1BeFree
umls:C0003507Aortic Valve Stenosis1BeFree
umls:C0004114Astrocytoma1BeFree
umls:C0004238Atrial Fibrillation1GAD
umls:C0006118Brain Neoplasms1BeFree
umls:C0007102Malignant tumor of colon1BeFree
umls:C0007103Malignant neoplasm of endometrium1BeFree
umls:C0007124Noninfiltrating Intraductal Carcinoma1BeFree
umls:C0007131Non-Small Cell Lung Carcinoma1BeFree
umls:C0007137Squamous cell carcinoma1BeFree
umls:C0010417Cryptorchidism1BeFree
umls:C0011847Diabetes1BeFree
umls:C0011849Diabetes Mellitus1BeFree
umls:C0011853Diabetes Mellitus, Experimental1RGD
umls:C0011854Diabetes Mellitus, Insulin-Dependent1BeFree
umls:C0014116Endocardial Cushion Defects1BeFree
umls:C0014859Esophageal Neoplasms1BeFree
umls:C0016522Foramen Ovale, Patent1BeFree
umls:C0017638Glioma1BeFree
umls:C0019284Diaphragmatic Hernia1CTD_human
umls:C0020542Pulmonary Hypertension1RGD
umls:C0023903Liver neoplasms1BeFree
umls:C0024117Chronic Obstructive Airway Disease1BeFree
umls:C0024121Lung Neoplasms1LHGDN
umls:C0027819Neuroblastoma1BeFree
umls:C0030297Pancreatic Neoplasm1LHGDN
umls:C0031511Pheochromocytoma1BeFree
umls:C0038356Stomach Neoplasms1LHGDN
umls:C0038454Cerebrovascular accident1BeFree
umls:C0039590Testicular Neoplasms1BeFree
umls:C0039747Thecoma1BeFree
umls:C0085695Chronic gastritis1BeFree
umls:C0149782Squamous cell carcinoma of lung1BeFree
umls:C0152013Adenocarcinoma of lung (disorder)1BeFree
umls:C0152018Esophageal carcinoma1BeFree
umls:C0155626Acute myocardial infarction1BeFree
umls:C0158981Neonatal diabetes mellitus1BeFree
umls:C0178874Tumor Progression1BeFree
umls:C0206624Hepatoblastoma1BeFree
umls:C0206686Adrenocortical carcinoma1BeFree
umls:C0243050Cardiovascular Abnormalities1GAD
umls:C0278701Gastric Adenocarcinoma1BeFree
umls:C0279607adult primary hepatocellular carcinoma1BeFree
umls:C0279628Adenocarcinoma Of Esophagus1BeFree
umls:C0344622Double inlet left ventricle1BeFree
umls:C0349782Ischemic cardiomyopathy1BeFree
umls:C0476089Endometrial Carcinoma1BeFree
umls:C0546837Malignant neoplasm of esophagus1BeFree
umls:C0699790Colon Carcinoma1BeFree
umls:C0700095Central neuroblastoma1BeFree
umls:C1336905Endometrial Endometrioid Adenocarcinoma1BeFree
umls:C1389016ATRIOVENTRICULAR CANAL DEFECT1BeFree
umls:C1389018Atrioventricular Septal Defect1BeFree
umls:C1458155Mammary Neoplasms1BeFree
umls:C1883486Uterine Corpus Cancer1BeFree
umls:C3280781ATRIOVENTRICULAR SEPTAL DEFECT 41CLINVAR,UNIPROT
umls:C3809858TESTICULAR ANOMALIES WITH OR WITHOUT CONGENITAL HEART DISEASE1CLINVAR,UNIPROT
umls:C3825567Tumors in children1BeFree
umls:C0344724Ostium secundum atrial septal defect0ORPHANET
umls:C0344735Partial atrioventricular canal0ORPHANET