TissGeneSummary for GATA4 |
Gene summary |
Basic gene information | Gene symbol | GATA4 |
Gene name | GATA binding protein 4 | |
Synonyms | ASD2|TACHD|TOF|VSD1 | |
Cytomap | UCSC genome browser: 8p23.1-p22 | |
Type of gene | protein-coding | |
RefGenes | NM_002052.3, | |
Description | GATA-binding factor 4transcription factor GATA-4 | |
Modification date | 20141207 | |
dbXrefs | MIM : 600576 | |
HGNC : HGNC | ||
Ensembl : ENSG00000136574 | ||
HPRD : 08994 | ||
Vega : OTTHUMG00000090800 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_GATA4 | |
BioGPS: 2626 | ||
Pathway | NCI Pathway Interaction Database: GATA4 | |
KEGG: GATA4 | ||
REACTOME: GATA4 | ||
Pathway Commons: GATA4 | ||
Context | iHOP: GATA4 | |
ligand binding site mutation search in PubMed: GATA4 | ||
UCL Cancer Institute: GATA4 | ||
Assigned class in TissGDB* | C | |
Included tissue-specific gene expression resources | TiGER,GTEx | |
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | Ovary | |
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | OV | |
Reference showing the relevant tissue of GATA4 | ||
Description by TissGene annotations | Fused withTSGene |
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO term | PubMed ID | GO:0045893 | positive regulation of transcription, DNA-templated | 24000169 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | 21330551 | GO:0060575 | intestinal epithelial cell differentiation | 9566909 | GO:0045893 | positive regulation of transcription, DNA-templated | 24000169 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | 21330551 | GO:0060575 | intestinal epithelial cell differentiation | 9566909 |
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TissGeneExp for GATA4 |
Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
BRCA | -1.464243037 | -2.739214967 | 1.27497193 | 1.53E-07 | 4.53E-07 |
THCA | -2.943310224 | -1.7775848 | -1.165725424 | 8.31E-09 | 4.19E-08 |
KIRP | -1.763925055 | -2.92935318 | 1.165428125 | 0.00341 | 0.008328126 |
HNSC | -0.761658194 | -2.52036052 | 1.758702326 | 0.000481 | 0.001797757 |
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TissGene-miRNA for GATA4 |
Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
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TissGeneMut for GATA4 |
TissGeneSNV for GATA4 |
nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
- nsSNVs sorted by frequency. |
AAchange | Cancer type | # samples |
p.G392D | STAD | 1 |
p.E216V | LUAD | 1 |
p.P290S | COAD | 1 |
p.G242S | UCEC | 1 |
p.P257L | SKCM | 1 |
p.G249S | SKCM | 1 |
p.S377I | PRAD | 1 |
p.H397Y | SKCM | 1 |
p.T366M | COAD | 1 |
p.L432S | SARC | 1 |
p.R267* | GBM | 1 |
p.T233M | PCPG | 1 |
p.Q275H | LUAD | 1 |
p.P290H | ACC | 1 |
p.D231Y | LUAD | 1 |
p.T355S | STAD | 1 |
p.D210N | PAAD | 1 |
p.R283C | LUAD | 1 |
p.S344I | ACC | 1 |
p.D210N | SKCM | 1 |
p.A412V | KIRP | 1 |
p.P226T | LUAD | 1 |
p.G393R | SKCM | 1 |
p.G249S | LGG | 1 |
p.A264T | GBM | 1 |
p.P334S | SKCM | 1 |
p.R230* | LUAD | 1 |
p.A388V | STAD | 1 |
p.A343S | BLCA | 1 |
p.R362C | UCEC | 1 |
p.G221W | LUAD | 1 |
p.A411V | UCEC | 1 |
p.D210A | SKCM | 1 |
p.G391D | STAD | 1 |
p.T366M | UCS | 1 |
p.S377G | COAD | 1 |
p.R265H | COAD | 1 |
p.A6V | STAD | 1 |
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TissGeneCNV for GATA4 |
Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
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TissGeneFusions for GATA4 |
Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
Chimerdb3.0 | ChiTaRs | NA | BM850490 | GATA4-GATA4 | chr8:11617053 | chr8:11616345 | |
Chimerdb3.0 | FusionScan | ESCA | TCGA-2H-A9GO-01A | GATA4-CTSB | CDS-5'UTR | chr8:11566437 | chr8:11710988 |
Chimerdb3.0 | FusionScan | ESCA | TCGA-L5-A4OJ-01A | GATA4-TRIB1 | Out-of-Frame | chr8:11566437 | chr8:126448247 |
Chimerdb3.0 | TopHat-Fusion | LGG | TCGA-HT-7854-01A | NCOR2-GATA4 | Out-of-Frame | chr12:124862782 | chr8:11606424 |
Chimerdb3.0 | TopHat-Fusion | LGG | TCGA-HT-7854-01A | NCOR2-GATA4 | In-Frame | chr12:124862782 | chr8:11606427 |
TCGAfusionPortal | PRADA | LGG | TCGA-HT-7854-01A | NCOR2-GATA4 | In-frame | Chr12:124862783 | Chr8:11606428 |
TCGAfusionPortal | PRADA | LUSC | TCGA-43-6143-01A | AC135352.2-GATA4 | 5UTR-CDS | Chr8:12848540 | Chr8:11606428 |
TCGAfusionPortal | PRADA | LUSC | TCGA-43-6143-01A | AC135352.1-GATA4 | 3UTR-5UTR | Chr8:12848509 | Chr8:11606425 |
TCGAfusionPortal | PRADA | OV | TCGA-09-2051-01A | FDFT1-GATA4 | In-frame | Chr8:11667359 | Chr8:11612555 |
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TissGeneNet for GATA4 |
Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
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TissGeneProg for GATA4 |
Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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TissGeneClin for GATA4 |
TissGeneDrug for GATA4 |
Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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TissGeneDisease for GATA4 |
Disease information associated with TissGene (DisGeNet, 2016-06-01) |
Disease ID | Disease name | # pubmeds | Source |
umls:C0018798 | Congenital Heart Defects | 25 | BeFree,GAD,RGD |
umls:C0152021 | Congenital heart disease | 21 | BeFree |
umls:C0010068 | Coronary heart disease | 19 | BeFree |
umls:C0018818 | Ventricular Septal Defects | 16 | BeFree,GAD |
umls:C0018817 | Atrial Septal Defects | 15 | BeFree,GAD,LHGDN |
umls:C0039685 | Tetralogy of Fallot | 13 | BeFree,CLINVAR,GAD,LHGDN,ORPHANET,UNIPROT |
umls:C0018816 | Heart Septal Defects | 12 | BeFree,GAD |
umls:C0596263 | Carcinogenesis | 9 | BeFree |
umls:C0018799 | Heart Diseases | 7 | BeFree,GAD,LHGDN |
umls:C0235833 | Congenital diaphragmatic hernia | 7 | BeFree,CTD_human,MGD |
umls:C0741916 | Cardiac defects | 7 | BeFree |
umls:C0024623 | Malignant neoplasm of stomach | 6 | BeFree |
umls:C0699791 | Stomach Carcinoma | 6 | BeFree |
umls:C1842778 | Atrial septal defect 2 | 6 | CLINVAR,CTD_human,MGD,UNIPROT |
umls:C0000768 | Congenital Abnormality | 5 | BeFree |
umls:C0006142 | Malignant neoplasm of breast | 5 | BeFree |
umls:C0018801 | Heart failure | 5 | BeFree |
umls:C0018802 | Congestive heart failure | 5 | BeFree |
umls:C0029925 | Ovarian Carcinoma | 5 | BeFree |
umls:C0001973 | Alcoholic Intoxication, Chronic | 4 | BeFree,CTD_human,GAD |
umls:C0007193 | Cardiomyopathy, Dilated | 4 | BeFree |
umls:C0018206 | granulosa cell tumor | 4 | BeFree,LHGDN |
umls:C0027627 | Neoplasm Metastasis | 4 | BeFree |
umls:C0034089 | Pulmonary Valve Stenosis | 4 | BeFree |
umls:C0678222 | Breast Carcinoma | 4 | BeFree |
umls:C1140680 | Malignant neoplasm of ovary | 4 | BeFree |
umls:C1956257 | Pulmonary Stenosis | 4 | BeFree |
umls:C0027051 | Myocardial Infarction | 3 | BeFree,CTD_human,RGD |
umls:C3280777 | VENTRICULAR SEPTAL DEFECT 1 | 3 | CLINVAR,UNIPROT |
umls:C0001418 | Adenocarcinoma | 2 | BeFree |
umls:C0007222 | Cardiovascular Diseases | 2 | BeFree |
umls:C0009402 | Colorectal Carcinoma | 2 | BeFree |
umls:C0009404 | Colorectal Neoplasms | 2 | CTD_human,LHGDN |
umls:C0013080 | Down Syndrome | 2 | BeFree |
umls:C0018800 | Cardiomegaly | 2 | CTD_human |
umls:C0041207 | Truncus Arteriosus, Persistent | 2 | BeFree |
umls:C0205851 | Germ cell tumor | 2 | BeFree |
umls:C0232197 | Fibrillation | 2 | BeFree |
umls:C0235974 | Pancreatic carcinoma | 2 | BeFree |
umls:C0340427 | Familial dilated cardiomyopathy | 2 | BeFree |
umls:C0340489 | Lone atrial fibrillation | 2 | BeFree |
umls:C0346647 | Malignant neoplasm of pancreas | 2 | BeFree |
umls:C0850666 | Helicobacter pylori infection | 2 | BeFree |
umls:C0878544 | Cardiomyopathies | 2 | BeFree |
umls:C0919267 | ovarian neoplasm | 2 | BeFree |
umls:C1527249 | Colorectal Cancer | 2 | BeFree |
umls:C1709246 | Non-Neoplastic Disorder | 2 | BeFree |
umls:C1956346 | Coronary Artery Disease | 2 | BeFree |
umls:C0001624 | Adrenal Gland Neoplasms | 1 | BeFree |
umls:C0003507 | Aortic Valve Stenosis | 1 | BeFree |
umls:C0004114 | Astrocytoma | 1 | BeFree |
umls:C0004238 | Atrial Fibrillation | 1 | GAD |
umls:C0006118 | Brain Neoplasms | 1 | BeFree |
umls:C0007102 | Malignant tumor of colon | 1 | BeFree |
umls:C0007103 | Malignant neoplasm of endometrium | 1 | BeFree |
umls:C0007124 | Noninfiltrating Intraductal Carcinoma | 1 | BeFree |
umls:C0007131 | Non-Small Cell Lung Carcinoma | 1 | BeFree |
umls:C0007137 | Squamous cell carcinoma | 1 | BeFree |
umls:C0010417 | Cryptorchidism | 1 | BeFree |
umls:C0011847 | Diabetes | 1 | BeFree |
umls:C0011849 | Diabetes Mellitus | 1 | BeFree |
umls:C0011853 | Diabetes Mellitus, Experimental | 1 | RGD |
umls:C0011854 | Diabetes Mellitus, Insulin-Dependent | 1 | BeFree |
umls:C0014116 | Endocardial Cushion Defects | 1 | BeFree |
umls:C0014859 | Esophageal Neoplasms | 1 | BeFree |
umls:C0016522 | Foramen Ovale, Patent | 1 | BeFree |
umls:C0017638 | Glioma | 1 | BeFree |
umls:C0019284 | Diaphragmatic Hernia | 1 | CTD_human |
umls:C0020542 | Pulmonary Hypertension | 1 | RGD |
umls:C0023903 | Liver neoplasms | 1 | BeFree |
umls:C0024117 | Chronic Obstructive Airway Disease | 1 | BeFree |
umls:C0024121 | Lung Neoplasms | 1 | LHGDN |
umls:C0027819 | Neuroblastoma | 1 | BeFree |
umls:C0030297 | Pancreatic Neoplasm | 1 | LHGDN |
umls:C0031511 | Pheochromocytoma | 1 | BeFree |
umls:C0038356 | Stomach Neoplasms | 1 | LHGDN |
umls:C0038454 | Cerebrovascular accident | 1 | BeFree |
umls:C0039590 | Testicular Neoplasms | 1 | BeFree |
umls:C0039747 | Thecoma | 1 | BeFree |
umls:C0085695 | Chronic gastritis | 1 | BeFree |
umls:C0149782 | Squamous cell carcinoma of lung | 1 | BeFree |
umls:C0152013 | Adenocarcinoma of lung (disorder) | 1 | BeFree |
umls:C0152018 | Esophageal carcinoma | 1 | BeFree |
umls:C0155626 | Acute myocardial infarction | 1 | BeFree |
umls:C0158981 | Neonatal diabetes mellitus | 1 | BeFree |
umls:C0178874 | Tumor Progression | 1 | BeFree |
umls:C0206624 | Hepatoblastoma | 1 | BeFree |
umls:C0206686 | Adrenocortical carcinoma | 1 | BeFree |
umls:C0243050 | Cardiovascular Abnormalities | 1 | GAD |
umls:C0278701 | Gastric Adenocarcinoma | 1 | BeFree |
umls:C0279607 | adult primary hepatocellular carcinoma | 1 | BeFree |
umls:C0279628 | Adenocarcinoma Of Esophagus | 1 | BeFree |
umls:C0344622 | Double inlet left ventricle | 1 | BeFree |
umls:C0349782 | Ischemic cardiomyopathy | 1 | BeFree |
umls:C0476089 | Endometrial Carcinoma | 1 | BeFree |
umls:C0546837 | Malignant neoplasm of esophagus | 1 | BeFree |
umls:C0699790 | Colon Carcinoma | 1 | BeFree |
umls:C0700095 | Central neuroblastoma | 1 | BeFree |
umls:C1336905 | Endometrial Endometrioid Adenocarcinoma | 1 | BeFree |
umls:C1389016 | ATRIOVENTRICULAR CANAL DEFECT | 1 | BeFree |
umls:C1389018 | Atrioventricular Septal Defect | 1 | BeFree |
umls:C1458155 | Mammary Neoplasms | 1 | BeFree |
umls:C1883486 | Uterine Corpus Cancer | 1 | BeFree |
umls:C3280781 | ATRIOVENTRICULAR SEPTAL DEFECT 4 | 1 | CLINVAR,UNIPROT |
umls:C3809858 | TESTICULAR ANOMALIES WITH OR WITHOUT CONGENITAL HEART DISEASE | 1 | CLINVAR,UNIPROT |
umls:C3825567 | Tumors in children | 1 | BeFree |
umls:C0344724 | Ostium secundum atrial septal defect | 0 | ORPHANET |
umls:C0344735 | Partial atrioventricular canal | 0 | ORPHANET |