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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for GATA6
check button Gene summary
Basic gene informationGene symbolGATA6
Gene nameGATA binding protein 6
Synonyms-
CytomapUCSC genome browser: 18q11.1-q11.2
Type of geneprotein-coding
RefGenesNM_005257.5,
DescriptionGATA-binding factor 6transcription factor GATA-6
Modification date20141222
dbXrefs MIM : 601656
HGNC : HGNC
Ensembl : ENSG00000141448
HPRD : 09043
Vega : OTTHUMG00000131767
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_GATA6
BioGPS: 2627
PathwayNCI Pathway Interaction Database: GATA6
KEGG: GATA6
REACTOME: GATA6
Pathway Commons: GATA6
ContextiHOP: GATA6
ligand binding site mutation search in PubMed: GATA6
UCL Cancer Institute: GATA6
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)OvaryStomach
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)OVSTAD
Reference showing the relevant tissue of GATA6
Description by TissGene annotationsCancer gene
Have significant anti-correlated miRNA
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0000122negative regulation of transcription from RNA polymerase II promoter18177748
GO:0006366transcription from RNA polymerase II promoter19666519
GO:0045766positive regulation of angiogenesis21127043
GO:0045892negative regulation of transcription, DNA-templated18177748
GO:0045944positive regulation of transcription from RNA polymerase II promoter19497978
GO:0060575intestinal epithelial cell differentiation9566909
GO:0070848response to growth factor21127043
GO:0071158positive regulation of cell cycle arrest9593712
GO:0071456cellular response to hypoxia21127043
GO:0000122negative regulation of transcription from RNA polymerase II promoter18177748
GO:0006366transcription from RNA polymerase II promoter19666519
GO:0045766positive regulation of angiogenesis21127043
GO:0045892negative regulation of transcription, DNA-templated18177748
GO:0045944positive regulation of transcription from RNA polymerase II promoter19497978
GO:0060575intestinal epithelial cell differentiation9566909
GO:0070848response to growth factor21127043
GO:0071158positive regulation of cell cycle arrest9593712
GO:0071456cellular response to hypoxia21127043


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TissGeneExp for GATA6

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LUAD0.8268451243.049833055-2.2229879313.40E-207.13E-19
LIHC1.3518270552.430269055-1.0784427.24E-096.51E-08
BLCA-0.5167195772.446748844-2.9634684213.48E-082.50E-06
KICH-2.3439789450.147469055-2.4914486.18E-072.41E-06
LUSC0.0229761922.957027173-2.934050988.69E-211.12E-19


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TissGene-miRNA for GATA6

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples
UCShsa-miR-146b-5pMIMAT00028090.04-0.2856
UVMhsa-miR-30b-5pMIMAT00004200.0041-0.3280


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TissGeneMut for GATA6
TissGeneSNV for GATA6

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.A459TLUAD2
p.M483TOV1
p.N529HLUAD1
p.P36LSKCM1
p.L118FLUAD1
p.G407DLIHC1
p.E579KUCEC1
p.A26DLUAD1
p.T503SSTAD1
p.R479IBLCA1
p.A70ELGG1
p.R493QUCEC1
p.Q143HSTAD1
p.P516LLUAD1
p.N458YSKCM1
p.F115LSTAD1
p.Q143RLGG1
p.S573CLUAD1
p.N529KGBM1
p.C504*UCEC1
p.S520CBLCA1
p.E559QTHCA1
p.P399LLIHC1
p.A16DLUAD1
p.R456HUCEC1
p.A134GLIHC1
p.A57TLGG1
p.V584LLUAD1
p.G540RSKCM1
p.R493QGBM1
p.M483ISKCM1
p.A578VLUSC1
p.M483IBLCA1
p.S576LLIHC1
p.S523*HNSC1
p.Y148NLGG1
p.S583YBLCA1
p.S588FSKCM1
p.G158SLUAD1


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TissGeneCNV for GATA6

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for GATA6

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNAAW015488GATA6-TBL1Ychr18:19757201chrY:6887705
TCGAfusionPortalPRADALUADTCGA-44-A47G-01AROCK1-GATA6In-frameChr18:18690779Chr18:19780619


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TissGeneNet for GATA6

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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COAD (tumor)COAD (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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HNSC (tumor)HNSC (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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KICH (tumor)KICH (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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KIRC (tumor)KIRC (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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KIRP (tumor)KIRP (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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LIHC (tumor)LIHC (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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LUAD (tumor)LUAD (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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LUSC (tumor)LUSC (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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PRAD (tumor)PRAD (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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STAD (tumor)STAD (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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THCA (tumor)THCA (normal)
GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (tumor)GATA6, HNF4A, SP1, CDK9, EP300, NKX2-1, CRIP2, MED1, CYB5A, MUC4, NOX1, HAMP, TFF2, KPNA3, KLF2 (normal)
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TissGeneProg for GATA6

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for GATA6
TissGeneDrug for GATA6

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for GATA6

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0596263Carcinogenesis8BeFree
umls:C0018798Congenital Heart Defects7BeFree,GAD
umls:C0024623Malignant neoplasm of stomach5BeFree
umls:C0152021Congenital heart disease5BeFree
umls:C0699791Stomach Carcinoma5BeFree
umls:C0000768Congenital Abnormality4BeFree
umls:C0009402Colorectal Carcinoma4BeFree
umls:C0010068Coronary heart disease4BeFree
umls:C0011847Diabetes4BeFree
umls:C0011849Diabetes Mellitus4BeFree
umls:C0027627Neoplasm Metastasis4BeFree
umls:C0039685Tetralogy of Fallot4BeFree,CLINVAR,GAD,ORPHANET,UNIPROT
umls:C0235974Pancreatic carcinoma4BeFree
umls:C0346647Malignant neoplasm of pancreas4BeFree
umls:C0699790Colon Carcinoma4BeFree
umls:C1527249Colorectal Cancer4BeFree
umls:C0001418Adenocarcinoma3BeFree
umls:C0001430Adenoma3BeFree
umls:C0007102Malignant tumor of colon3BeFree
umls:C0018818Ventricular Septal Defects3BeFree
umls:C0029928Ovarian Diseases3BeFree
umls:C0041207Truncus Arteriosus, Persistent3BeFree,CLINVAR
umls:C0158981Neonatal diabetes mellitus3BeFree
umls:C0206686Adrenocortical carcinoma3BeFree
umls:C1140680Malignant neoplasm of ovary3BeFree,GAD
umls:C0002793Anaplasia2BeFree
umls:C0029925Ovarian Carcinoma2BeFree
umls:C0032460Polycystic Ovary Syndrome2BeFree,LHGDN
umls:C0205851Germ cell tumor2BeFree
umls:C0232197Fibrillation2BeFree
umls:C0267963Exocrine pancreatic insufficiency2BeFree
umls:C0919267ovarian neoplasm2BeFree
umls:C1704272Benign Prostatic Hyperplasia2BeFree
umls:C0001624Adrenal Gland Neoplasms1BeFree
umls:C0004114Astrocytoma1BeFree
umls:C0005694Bladder neck obstruction1BeFree
umls:C0006142Malignant neoplasm of breast1BeFree
umls:C0007138Carcinoma, Transitional Cell1BeFree
umls:C0007193Cardiomyopathy, Dilated1BeFree
umls:C0010346Crohn Disease1GAD
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent1BeFree
umls:C0014145Yolk Sac Tumor1BeFree,LHGDN
umls:C0014175Endometriosis1BeFree
umls:C0017152Gastritis1BeFree
umls:C0017636Glioblastoma1BeFree
umls:C0017638Glioma1BeFree
umls:C0018816Heart Septal Defects1BeFree
umls:C0018817Atrial Septal Defects1BeFree,GAD
umls:C0019284Diaphragmatic Hernia1CTD_human
umls:C0020542Pulmonary Hypertension1RGD
umls:C0021390Inflammatory Bowel Diseases1GAD
umls:C0023903Liver neoplasms1BeFree
umls:C0024121Lung Neoplasms1CTD_human
umls:C0030297Pancreatic Neoplasm1LHGDN
umls:C0036421Systemic Scleroderma1BeFree
umls:C0036920Sezary Syndrome1BeFree
umls:C0038356Stomach Neoplasms1LHGDN
umls:C0039538Teratoma1BeFree,LHGDN
umls:C0039747Thecoma1BeFree
umls:C0085786Hamman-Rich syndrome1BeFree
umls:C0149782Squamous cell carcinoma of lung1BeFree
umls:C0152013Adenocarcinoma of lung (disorder)1BeFree
umls:C0152171Idiopathic pulmonary hypertension1BeFree
umls:C0206667Adrenal Cortical Adenoma1BeFree
umls:C0206698Cholangiocarcinoma1BeFree
umls:C0235833Congenital diaphragmatic hernia1BeFree,ORPHANET
umls:C0242379Malignant neoplasm of lung1BeFree
umls:C0268855Hypertrophy of bladder1BeFree
umls:C0281361Adenocarcinoma of pancreas1BeFree
umls:C0334520Teratoma, Malignant1BeFree
umls:C0334579Anaplastic astrocytoma1BeFree
umls:C0340427Familial dilated cardiomyopathy1BeFree
umls:C0574785Lower Urinary Tract Symptoms1BeFree
umls:C0678222Breast Carcinoma1BeFree
umls:C0686619Secondary malignant neoplasm of lymph node1BeFree
umls:C0850572Adenomatous polyp of colon1BeFree
umls:C0949059Polyp of large intestine1BeFree
umls:C1258085Barrett Epithelium1BeFree
umls:C1301034Pancreatic intraepithelial neoplasia1BeFree
umls:C1335302Pancreatic Ductal Adenocarcinoma1BeFree
umls:C1800706Idiopathic Pulmonary Fibrosis1BeFree
umls:C1838780Pancreatic Hypoplasia, Congenital, with Diabetes Mellitus and Congenital Heart Disease1BeFree,CLINVAR
umls:C1857586CONOTRUNCAL HEART MALFORMATIONS (disorder)1UNIPROT
umls:C2973725Pulmonary arterial hypertension1BeFree
umls:C3280939ATRIOVENTRICULAR SEPTAL DEFECT 51CLINVAR,UNIPROT
umls:C3280943ATRIAL SEPTAL DEFECT 91CLINVAR,UNIPROT
umls:C3714844Pulmonary Hypertension, Primary, 1, With Hereditary Hemorrhagic Telangiectasia1BeFree
umls:C4012454HEART DEFECTS, CONGENITAL, AND OTHER CONGENITAL ANOMALIES1UNIPROT
umls:C0344724Ostium secundum atrial septal defect0ORPHANET
umls:C0344735Partial atrioventricular canal0ORPHANET
umls:C2931296Yorifuji Okuno syndrome0ORPHANET