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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for GRM8
check button Gene summary
Basic gene informationGene symbolGRM8
Gene nameglutamate receptor, metabotropic 8
SynonymsGLUR8|GPRC1H|MGLUR8|mGlu8
CytomapUCSC genome browser: 7q31.3-q32.1
Type of geneprotein-coding
RefGenesNM_000845.2,
NM_001127323.1,NR_028041.1,
Descriptionmetabotropic glutamate receptor 8
Modification date20141207
dbXrefs MIM : 601116
HGNC : HGNC
Ensembl : ENSG00000179603
HPRD : 03071
Vega : OTTHUMG00000022888
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_GRM8
BioGPS: 2918
PathwayNCI Pathway Interaction Database: GRM8
KEGG: GRM8
REACTOME: GRM8
Pathway Commons: GRM8
ContextiHOP: GRM8
ligand binding site mutation search in PubMed: GRM8
UCL Cancer Institute: GRM8
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)ColonTestis
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)COADTGCT
Reference showing the relevant tissue of GRM8
Description by TissGene annotationsCancer gene
Fused withTSGene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0030818negative regulation of cAMP biosynthetic process11166323
GO:0030818negative regulation of cAMP biosynthetic process11166323


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TissGeneExp for GRM8

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KIRC4.0889689942.2401884381.8487805562.39E-129.92E-12
BRCA0.649753497-1.7497710652.3995245611.68E-405.26E-39
LIHC-0.3743614512.636304549-3.0106662.91E-114.17E-10
STAD0.609299549-1.4513317012.060631254.96E-092.86E-07
KICH1.0851365492.328172549-1.2430360.002780.005544905
KIRP3.8330526742.1221651741.71088753.68E-050.0001382


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TissGene-miRNA for GRM8

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for GRM8
TissGeneSNV for GRM8

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.S908FSKCM4
p.Q320*SKCM3
p.V624LLUAD2
p.E620KSKCM2
p.S662RESCA2
p.S219LSKCM2
p.S823GSTAD2
p.G50DHNSC2
p.R348QSKCM2
p.G873ESKCM2
p.E365DUCEC2
p.R852CLIHC2
p.S894FSKCM2
p.S649FSKCM2
p.E70KSKCM2
p.Q320XSKCM2
p.V478ASKCM1
p.K370RSKCM1
p.H674YSKCM1
p.P845LSKCM1
p.E271QESCA1
p.G244VLUAD1
p.R30IUCEC1
p.R240MUCEC1
p.P774TLUAD1
p.I901VLUAD1
p.G439VUCEC1
p.R566LSARC1
p.T730ILUAD1
p.E66*HNSC1
p.N671YLUAD1
p.Q494*SKCM1
p.S497FCESC1
p.L833RUCEC1
p.F637ICOAD1
p.I428TLUAD1
p.M639IESCA1
p.G368CLIHC1
p.P587RLUAD1
p.R652LLUAD1
p.L98QLUAD1
p.P512ADLBC1
p.V624MSKCM1
p.F637IHNSC1
p.T528MGBM1
p.G754ESTAD1
p.F367YSKCM1
p.P468ACESC1
p.W305CACC1
p.D743NSKCM1
p.A391PHNSC1
p.L16FSKCM1
p.H32YESCA1
p.D472NSKCM1
p.T220SLUAD1
p.R447WCESC1
p.W358CTHYM1
p.E224QLUAD1
p.F461STGCT1
p.R354QSKCM1
p.A408VHNSC1
p.Q850EBLCA1
p.T528MPAAD1
p.S823RSTAD1
p.T645KSTAD1
p.R729WLAML1
p.R343QSKCM1
p.R540SLUAD1
p.S691FLUAD1
p.S683YLGG1
p.S395FPAAD1
p.Y227*PRAD1
p.S691ILUAD1
p.A863SHNSC1
p.R75ICOAD1
p.E365VLUAD1
p.S394PREAD1
p.S694YSKCM1
p.R101CSTAD1
p.R672HSTAD1
p.C3*LUAD1
p.K68NCESC1
p.D422VHNSC1
p.L93FSKCM1
p.G879SSKCM1
p.R566SLUSC1
p.E890KSKCM1
p.Y189DSTAD1
p.R876ISTAD1
p.Q321HKIRC1
p.G754*UCEC1
p.E880KSTAD1
p.L387MLUSC1
p.L416MLUAD1
p.I315LSARC1
p.R343QUCEC1
p.R540HHNSC1
p.A665DLUSC1
p.A505VSKCM1
p.W713*BRCA1
p.S219LUCEC1
p.V838ISKCM1
p.T31AUCEC1
p.R852LLUAD1
p.V614MCOAD1
p.I842FHNSC1
p.R389QSKCM1
p.N298SHNSC1
p.A467SLUAD1
p.P198TSKCM1
p.G149VACC1
p.H496YSKCM1
p.E554DLUSC1
p.V601LLUSC1
p.S581YLUAD1
p.K296TCOAD1
p.A597TUCEC1
p.R354QBLCA1
p.S756NSTAD1
p.P425HACC1
p.S691CLUAD1
p.R470LLUAD1
p.G426ESKCM1
p.P254QLUAD1
p.S825RSTAD1
p.P719SSKCM1
p.R651QCOAD1
p.K837RSKCM1
p.N216DUCEC1
p.R354QREAD1
p.G568RLUAD1
p.I646NESCA1
p.S373*STAD1
p.K382NUCEC1
p.N450HUCS1
p.L51FSKCM1
p.R41QESCA1
p.N450HREAD1
p.P900LLUAD1
p.T699NLUAD1
p.S902ILUAD1
p.Q202EHNSC1
p.C648FLUAD1
p.A862PLUAD1
p.R566SHNSC1
p.G873RSKCM1
p.Q237*SKCM1
p.K143*BLCA1
p.C569FLUAD1
p.D145NUCEC1
p.T528MSTAD1
p.R433QREAD1
p.A128PLUSC1
p.S230NHNSC1
p.E887KSKCM1
p.D185NSKCM1
p.S411FSKCM1
p.G260ACESC1
p.E578KSKCM1
p.C541SPAAD1
p.G312VUCS1
p.P573LSKCM1
p.E77KLIHC1
p.G489SHNSC1
p.A19SSTAD1
p.W713CLUSC1
p.A122TSTAD1
p.F451CSTAD1
p.H380YBLCA1
p.H511PLUAD1
p.I842FSTAD1
p.R355SESCA1
p.S219LOV1
p.T786AUCEC1
p.A128SHNSC1
p.K903NTGCT1
p.L749FCOAD1
p.K894EACC1
p.K401NSKCM1
p.R566HBRCA1
p.F637LCOAD1
p.Q398HLUSC1
p.L558PSKCM1
p.P719LSTAD1
p.D104HHNSC1
p.I315LESCA1
p.R433QSKCM1
p.G228DSKCM1
p.Q249LLUSC1
p.E620KBLCA1
p.P533SSKCM1
p.E463KSKCM1
p.L818RBLCA1
p.G368VLIHC1
p.R433QLGG1
p.P562RLIHC1
p.C246FSKCM1
p.L631FSKCM1
p.G465VESCA1
p.Y725NHNSC1
p.S454NUCEC1
p.H38NESCA1
p.R30KCHOL1
p.R433QGBM1
p.E887DBLCA1
p.V120LLUSC1
p.S159FSKCM1
p.G152RGBM1
p.F677SGBM1
p.G469ESKCM1
p.I381VCESC1
p.E233KHNSC1
p.A584TSARC1
p.S10FBLCA1
p.V684ILUAD1
p.V42LLUAD1
p.R343GUCEC1
p.W23CMESO1
p.V232LLUAD1
p.S499NSKCM1
p.L93PSKCM1
p.G214RSKCM1
p.L621PSTAD1
p.T770RSKCM1
p.Y344XLIHC1
p.I446TLIHC1
p.R354QGBM1
p.N274HBRCA1
p.S855NHNSC1
p.I102VESCA1
p.L708HSTAD1
p.L213MLUAD1
p.L518QLUAD1
p.S219LLUAD1
p.L666FSKCM1
p.R672HHNSC1
p.Y725CLUSC1
p.A415VLUAD1
p.R167IUCEC1
p.S894PLIHC1
p.Y755CLUSC1
p.C569XCOAD1
p.L183ISARC1
p.S200FSARC1
p.Q679KSTAD1
p.G531ELUAD1
p.G784RSKCM1
p.G905RESCA1
p.E256KSKCM1
p.N848YLUAD1
p.F777LKICH1
p.E484KSKCM1
p.M28IUCEC1
p.K682EPRAD1
p.R377KSKCM1
p.Q475KREAD1
p.C64WOV1
p.D339HLUSC1
p.I798NSKCM1
p.R348*LUAD1
p.R194XPAAD1
p.K857TSTAD1
p.V614LLGG1
p.R194*PAAD1
p.G628RSKCM1
p.L117VSTAD1
p.S310ICOAD1
p.S883ILUAD1
p.R276*SKCM1
p.P643TOV1
p.I793VHNSC1
p.S907*BRCA1
p.G465RGBM1
p.S129LSKCM1
p.N452KESCA1
p.G594ESKCM1
p.Q320HLUAD1
p.G531RSKCM1
p.A686VLAML1
p.H420RSKCM1
p.I171TLIHC1
p.E361KSKCM1
p.Q321ELUAD1
p.R607LLUAD1
p.K146NUCEC1
p.N563IHNSC1
p.T786POV1
p.R675QSKCM1
p.S821FHNSC1
p.G136ESKCM1
p.A19VUCEC1
p.I757VLUAD1
p.K872NSKCM1
p.S373XSTAD1
p.E620KREAD1
p.V653LLUSC1
p.H674QLUAD1
p.A858VSKCM1
p.S581FSKCM1
p.K267QSKCM1
p.E364KSKCM1
p.S156RSARC1
p.V653DSARC1


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TissGeneCNV for GRM8

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for GRM8

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNAAI267717GRM8-KCNQ5chr7:126717987chr6:73356962
Chimerdb3.0ChiTaRsNAEL582588GRM8-GRM8chr7:126860910chr7:126860978
Chimerdb3.0ChiTaRsNABF893584GRM8-GANABchr7:126524998chr11:62392486
Chimerdb3.0ChiTaRsNAEL585323GRM8-GRM8chr7:126861322chr7:126860852
Chimerdb3.0FusionScanSARCTCGA-DX-A6BH-01ACPSF6-GRM83'UTR-3'UTRchr12:69656342chr7:126746766
TCGAfusionPortalPRADABRCATCGA-A1-A0SN-01ASND1-GRM8Out-of-frameChr7:127361454Chr7:126544737
TCGAfusionPortalPRADALUSCTCGA-39-5011-01AHIPK2-GRM8Out-of-frameChr7:139285163Chr7:126249552


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TissGeneNet for GRM8

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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COAD (tumor)COAD (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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HNSC (tumor)HNSC (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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KICH (tumor)KICH (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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KIRC (tumor)KIRC (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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KIRP (tumor)KIRP (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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LIHC (tumor)LIHC (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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LUAD (tumor)LUAD (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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LUSC (tumor)LUSC (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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PRAD (tumor)PRAD (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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STAD (tumor)STAD (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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THCA (tumor)THCA (normal)
GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (tumor)GRM8, FLNA, GPRASP1, PIAS2, PIAS1 (normal)
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TissGeneProg for GRM8

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for GRM8
TissGeneDrug for GRM8

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for GRM8

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0036341Schizophrenia4BeFree,GAD
umls:C0001973Alcoholic Intoxication, Chronic2BeFree,GAD
umls:C0004352Autistic Disorder2BeFree,CTD_human,GAD,LHGDN
umls:C0036572Seizures2BeFree,RGD
umls:C1263846Attention deficit hyperactivity disorder2BeFree,CTD_human
umls:C0003469Anxiety Disorders1BeFree,CTD_human
umls:C0004936Mental disorders1GAD
umls:C0007222Cardiovascular Diseases1GAD
umls:C0007273Carotid Artery Diseases1GAD
umls:C0007786Brain Ischemia1GAD
umls:C0010068Coronary heart disease1GAD
umls:C0011570Mental Depression1GAD
umls:C0014544Epilepsy1BeFree,RGD
umls:C0017639Gliosis1CTD_human
umls:C0018817Atrial Septal Defects1BeFree
umls:C0019337Heroin Dependence1GAD
umls:C0026269Mitral Valve Stenosis1BeFree
umls:C0026769Multiple Sclerosis1BeFree
umls:C0038454Cerebrovascular accident1GAD
umls:C0040336Tobacco Use Disorder1GAD
umls:C0043094Weight Gain1GAD
umls:C0149925Small cell carcinoma of lung1CTD_human
umls:C0242422Parkinsonian Disorders1RGD
umls:C0524528Pervasive Development Disorder1BeFree,GAD
umls:C0524662Opiate Addiction1BeFree
umls:C0586323Alcohol Withdrawal Seizures1GAD
umls:C1852467Creutzfeldt-Jakob Disease, Sporadic1BeFree
umls:C2911647Weight Gain Adverse Event1GAD