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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for HBB
check button Gene summary
Basic gene informationGene symbolHBB
Gene namehemoglobin, beta
SynonymsCD113t-C|beta-globin
CytomapUCSC genome browser: 11p15.5
Type of geneprotein-coding
RefGenesNM_000518.4,
Descriptionbeta globin chainhemoglobin beta chainhemoglobin subunit beta
Modification date20141222
dbXrefs MIM : 141900
HGNC : HGNC
Ensembl : ENSG00000244734
HPRD : 00786
Vega : OTTHUMG00000066678
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_HBB
BioGPS: 3043
PathwayNCI Pathway Interaction Database: HBB
KEGG: HBB
REACTOME: HBB
Pathway Commons: HBB
ContextiHOP: HBB
ligand binding site mutation search in PubMed: HBB
UCL Cancer Institute: HBB
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesHPA,TiGER
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Bone marrow
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)LAML
Reference showing the relevant tissue of HBB
Description by TissGene annotationsCancer gene
Fused withTSGene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0010942positive regulation of cell death19740759
GO:0042542response to hydrogen peroxide19740759
GO:0042744hydrogen peroxide catabolic process19740759
GO:0051291protein heterooligomerization19740759
GO:0055114oxidation-reduction process19740759
GO:0010942positive regulation of cell death19740759
GO:0042542response to hydrogen peroxide19740759
GO:0042744hydrogen peroxide catabolic process19740759
GO:0051291protein heterooligomerization19740759
GO:0055114oxidation-reduction process19740759


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TissGeneExp for HBB

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LIHC1.7446478284.048047828-2.30344.48E-127.77E-11
LUSC1.4529374756.694129632-5.2411921571.46E-274.57E-26
THCA2.2905503374.730918133-2.4403677972.42E-142.79E-13
BRCA-0.2158363124.047502284-4.2633385961.40E-352.70E-34
STAD0.5991260783.963076078-3.363953.88E-092.36E-07
LUAD2.8405267256.869021552-4.0284948288.52E-191.36E-17
COAD0.7312159824.417881367-3.6866653853.65E-131.11E-11
ESCA0.3940289192.489856192-2.0958272730.004460.037011343
HNSC0.0926361071.517722154-1.4250860470.01430.033515625
KICH3.1521478284.158131828-1.0059840.01550.026856918
KIRP1.6983073283.344894828-1.64658750.001750.004525375
PRAD0.2015102131.459079444-1.2575692315.60E-050.000249992


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TissGene-miRNA for HBB

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for HBB
TissGeneSNV for HBB

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.P101SSKCM2
p.P101LSKCM1
p.P37ASTAD1
p.V135LLUSC1
p.A14VTHYM1
p.S90GESCA1
p.P52SSKCM1
p.G75CLUAD1
p.W38*PAAD1
p.H144YSKCM1
p.W38XPAAD1
p.G17DSKCM1
p.H117RUCEC1
p.E44KSKCM1
p.L79MLUAD1
p.G25SSKCM1
p.G70VLUAD1
p.G65DTHYM1
p.G75CKIRC1
p.A14SBRCA1
p.M56ISKCM1
p.E8DUCEC1
p.G70CLUAD1
p.K83NPRAD1
p.D48NSKCM1
p.Q132HBLCA1
p.N58YLUAD1
p.V35FLGG1
p.C94YCOAD1
p.A129SLUAD1
p.H144QLUAD1
p.P126TLUAD1
p.V68LLUSC1
p.A14VESCA1
p.F43ITHYM1


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TissGeneCNV for HBB

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for HBB

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNADA941422HBB-ZMIZ2chr11:5248301chr7:44804764
Chimerdb3.0ChiTaRsNAAJ710574HBB-LRRC2chr11:5248285chr3:46558688
Chimerdb3.0ChiTaRsNABF899407MOGS-HBBchr2:74689159chr11:5246906
Chimerdb3.0ChiTaRsNABE843851UGT3A2-HBBchr5:36035897chr11:5246826
Chimerdb3.0ChiTaRsNABF899427MOGS-HBBchr2:74688694chr11:5246903
Chimerdb3.0ChiTaRsNAAJ710681HBB-RNH1chr11:5248285chr11:494514
Chimerdb3.0ChiTaRsNABI030799HBB-TCEANC2chr11:5248197chr1:54554362
Chimerdb3.0ChiTaRsNAAA367796RPLP2-HBBchr11:812870chr11:5248004
Chimerdb3.0ChiTaRsNAAI133247ZDHHC20-HBBchr13:21950021chr11:5248003


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TissGeneNet for HBB

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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COAD (tumor)COAD (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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HNSC (tumor)HNSC (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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KICH (tumor)KICH (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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KIRC (tumor)KIRC (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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KIRP (tumor)KIRP (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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LIHC (tumor)LIHC (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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LUAD (tumor)LUAD (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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LUSC (tumor)LUSC (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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PRAD (tumor)PRAD (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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STAD (tumor)STAD (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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THCA (tumor)THCA (normal)
HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (tumor)HBB, UBC, GABARAPL2, PITX3, UCHL5, DMWD, UPF3A, HBA1, HBG2, HP, UPF3B, HBZ, SELT (normal)
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TissGeneProg for HBB

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for HBB
TissGeneDrug for HBB

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status
DB00893Iron DextranActivatorSmall moleculeApproved|Vet_approved


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TissGeneDisease for HBB

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0005283beta Thalassemia329BeFree,CLINVAR,CTD_human,GAD,LHGDN,ORPHANET,UNIPROT
umls:C0002895Anemia, Sickle Cell134BeFree,CLINVAR,CTD_human,GAD,LHGDN,ORPHANET,UNIPROT
umls:C0039730Thalassemia112BeFree,GAD,LHGDN
umls:C0002312alpha-Thalassemia39BeFree,CLINVAR,CTD_human,GAD,LHGDN
umls:C0019045Hemoglobinopathies39BeFree,CLINVAR,CTD_human,GAD
umls:C0002875Cooley's anemia29BeFree
umls:C0023440Acute Erythroblastic Leukemia28BeFree
umls:C0271980beta^0^ Thalassemia27BeFree,CLINVAR
umls:C0271994Hereditary persistence of fetal hemoglobin thalassemia26BeFree
umls:C0002871Anemia25BeFree,GAD,RGD
umls:C0019025Hemoglobin F Disease23BeFree
umls:C1456873alpha^+^ Thalassemia19BeFree
umls:C0024530Malaria18BeFree,GAD,LHGDN
umls:C0472767Beta thalassemia intermedia15BeFree,CLINVAR,ORPHANET
umls:C0271979Thalassemia Intermedia14BeFree,CLINVAR
umls:C0271985Delta-Beta Thalassemia14BeFree,CLINVAR,ORPHANET
umls:C0024535Malaria, Falciparum11BeFree,CTD_human,GAD
umls:C0019693HIV Infections9BeFree,GAD
umls:C0878521Beta thalassemia trait9BeFree
umls:C0037054Sickle Cell Trait8BeFree,GAD
umls:C0018790Cardiac Arrest7BeFree
umls:C0002878Anemia, Hemolytic6BeFree,CLINVAR
umls:C0869532Beta thalassemia minor6BeFree
umls:C0019034Hemoglobin SC Disease5BeFree,GAD,ORPHANET
umls:C0271990delta-Thalassemia5BeFree
umls:C2939465Deficiency of glucose-6-phosphate dehydrogenase5BeFree,GAD
umls:C0015929Fetal Diseases4GAD
umls:C0018939Hematological Disease4BeFree
umls:C0027627Neoplasm Metastasis4BeFree
umls:C0032461Polycythemia4BeFree,CTD_human
umls:C0242723Parasitemia4BeFree,GAD
umls:C0271987^A^gamma delta beta^0^ thalassemia4BeFree
umls:C0085576Iron-Refractory Iron Deficiency Anemia3BeFree
umls:C0878520BETA THALASSEMIA, HETEROZYGOUS3BeFree
umls:C2825560S-Beta Thalassemia3BeFree
umls:C3161373Dominant thalassemia3BeFree
umls:C0006142Malignant neoplasm of breast2BeFree
umls:C0008350Cholelithiasis2GAD
umls:C0010674Cystic Fibrosis2BeFree
umls:C0015230Exanthema2BeFree
umls:C0019340Herpes NOS2BeFree
umls:C0019348Herpes Simplex Infections2BeFree
umls:C0020538Hypertensive disease2GAD
umls:C0024299Lymphoma2BeFree
umls:C0038454Cerebrovascular accident2BeFree,GAD
umls:C0152264Familial erythrocytosis2BeFree
umls:C0162872Aortic Aneurysm, Thoracic2BeFree
umls:C0206664Teratocarcinoma2BeFree
umls:C0238644Anemia, severe2BeFree
umls:C0678222Breast Carcinoma2BeFree
umls:C0702157Thalassemia trait2BeFree
umls:C0848332Spots on skin2BeFree
umls:C1527405Erythrocytosis2BeFree,CLINVAR
umls:C1842937AURAL ATRESIA, CONGENITAL2BeFree
umls:C0001925Albuminuria1GAD
umls:C0002881Anemia, Hemolytic, Congenital1BeFree
umls:C0002884Hypochromic anemia1GAD
umls:C0006012Borderline Personality Disorder1BeFree
umls:C0006287Bronchopulmonary Dysplasia1BeFree
umls:C0008031Chest Pain1BeFree
umls:C0010054Coronary Arteriosclerosis1GAD
umls:C0010068Coronary heart disease1GAD
umls:C0010520Cyanosis1CTD_human
umls:C0011854Diabetes Mellitus, Insulin-Dependent1GAD
umls:C0013502Echinococcosis1CTD_human
umls:C0017152Gastritis1BeFree
umls:C0018784Sensorineural Hearing Loss (disorder)1GAD
umls:C0018995Hemochromatosis1GAD
umls:C0019021Hemoglobin C Disease1GAD,ORPHANET
umls:C0019054Hemolysis (disorder)1GAD
umls:C0019163Hepatitis B1BeFree
umls:C0020305Hydrops Fetalis1GAD
umls:C0021368Inflammation1GAD
umls:C0024534Malaria, Cerebral1GAD
umls:C0025637Methemoglobinemia1CTD_human
umls:C0026946Mycoses1BeFree
umls:C0029925Ovarian Carcinoma1BeFree
umls:C0030193Pain1GAD
umls:C0031485Phenylketonurias1BeFree
umls:C0032463Polycythemia Vera1CTD_human
umls:C0032964Pregnancy Complications, Hematologic1GAD
umls:C0032965Pregnancy Complications, Infectious1GAD
umls:C0035455Rhinitis1BeFree
umls:C0040136Thyroid Neoplasm1LHGDN
umls:C0040592Trachoma1GAD
umls:C0085568Buruli Ulcer1GAD
umls:C0151699Intracranial Hemorrhages1RGD
umls:C0151744Myocardial Ischemia1GAD
umls:C0154089Carcinoma in situ of penis1BeFree
umls:C0162316Iron deficiency anemia1GAD
umls:C0162429Malnutrition1LHGDN
umls:C0221019Sickle cell-beta-thalassemia1BeFree,ORPHANET
umls:C0238461Anaplastic thyroid carcinoma1BeFree
umls:C0239946Fibrosis, Liver1BeFree
umls:C0242339Dyslipidemias1GAD
umls:C0242656Disease Progression1GAD
umls:C0243026Sepsis1LHGDN
umls:C0263454Chloracne1CTD_human
umls:C0268731Renal glomerular disease1BeFree
umls:C0271930Anemia of pregnancy1GAD
umls:C0282193Iron Overload1BeFree
umls:C0302592Cervix carcinoma1BeFree
umls:C0340543Familial primary pulmonary hypertension1BeFree
umls:C0343643Facial wart1BeFree
umls:C0472763Alpha thalassemia-2 trait1BeFree
umls:C0494165Secondary malignant neoplasm of liver1BeFree
umls:C0524910Hepatitis C, Chronic1BeFree,LHGDN
umls:C0740577Acute abdominal pain1BeFree
umls:C0751434Classical phenylketonuria1BeFree
umls:C0857812Sickle cell-beta^+^-thalassemia1BeFree,ORPHANET
umls:C1140680Malignant neoplasm of ovary1BeFree
umls:C2873756Severe beta thalassemia1BeFree
umls:C2931822Nasopharyngeal carcinoma1BeFree
umls:C3811653Experimental Organism Basal Cell Carcinoma1BeFree
umls:C0238159Hemoglobin E disease0ORPHANET
umls:C0272080Hemoglobin D disease0ORPHANET
umls:C0272084Hemoglobin SD disease0ORPHANET
umls:C0272085Sickle cell-hemoglobin E disease0ORPHANET
umls:C0472777Hemoglobin E/beta thalassemia disease0ORPHANET
umls:C0599528beta thalassemia major anemia0CLINVAR
umls:C0700299Heinz Body Anemias0CLINVAR,CTD_human,ORPHANET
umls:C1264000Sickle cell-Hemoglobin O Arab disease0CLINVAR
umls:C1841621FETAL HEMOGLOBIN QUANTITATIVE TRAIT LOCUS 10CLINVAR
umls:C1858990Beta Thalassemia, Dominant Inclusion Body Type0CLINVAR,CTD_human,ORPHANET
umls:C2720293MALARIA, RESISTANCE TO0CLINVAR