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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for HUNK
check button Gene summary
Basic gene informationGene symbolHUNK
Gene namehormonally up-regulated Neu-associated kinase
Synonyms-
CytomapUCSC genome browser: 21q22.1
Type of geneprotein-coding
RefGenesNM_014586.1,
DescriptionB19hormonally up-regulated neu tumor-associated kinasehormonally upregulated Neu-associated kinasehormonally upregulated neu tumor-associated kinaseserine/threonine protein kinase MAK-Vserine/threonine-protein kinase MAK-V
Modification date20141207
dbXrefs MIM : 606532
HGNC : HGNC
Ensembl : ENSG00000142149
HPRD : 09410
Vega : OTTHUMG00000085019
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_HUNK
BioGPS: 30811
PathwayNCI Pathway Interaction Database: HUNK
KEGG: HUNK
REACTOME: HUNK
Pathway Commons: HUNK
ContextiHOP: HUNK
ligand binding site mutation search in PubMed: HUNK
UCL Cancer Institute: HUNK
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)KidneyUterus
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)KIRC,KIRP,KICHUCEC,UCS
Reference showing the relevant tissue of HUNK
Description by TissGene annotationsProtective TissGene in RFS
Cancer gene
Have significant anti-correlated miRNA
Fused withOncogene
Fused withTSGene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for HUNK

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KICH-4.2767490662.359446934-6.6361963.39E-169.34E-15
PRAD-1.679702835-0.285322066-1.3943807695.68E-097.49E-08
KIRC0.4552446012.25188349-1.7966388895.04E-235.04E-22
BRCA-0.6437268910.653508197-1.2972350883.57E-111.46E-10
BLCA-1.5331286450.172460829-1.7055894740.001390.009396231


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TissGene-miRNA for HUNK

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples
LUADhsa-miR-27b-3pMIMAT00004190.013-0.3260


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TissGeneMut for HUNK
TissGeneSNV for HUNK

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.R567CSKCM4
p.R168*UCEC2
p.R110QLIHC2
p.E266KSKCM1
p.A236TSTAD1
p.R591CCOAD1
p.A433VSKCM1
p.K354*HNSC1
p.E688DESCA1
p.M671LKIRP1
p.Q677HHNSC1
p.I547FLIHC1
p.D342NSKCM1
p.R501HGBM1
p.I363TUCS1
p.T352ASTAD1
p.A316VSTAD1
p.H570YUCEC1
p.R662QUCEC1
p.Q113ELUAD1
p.E519XESCA1
p.T260MHNSC1
p.R318CSKCM1
p.R179WCOAD1
p.T132MCOAD1
p.L355QLUAD1
p.Q312*LUAD1
p.I363MESCA1
p.D279EGBM1
p.R673SLUSC1
p.R119CGBM1
p.Y240HSARC1
p.M472IDLBC1
p.K151ELUSC1
p.G215CLUAD1
p.R675HLUAD1
p.R164SPRAD1
p.V571ILUSC1
p.C512FTHYM1
p.R485QCOAD1
p.Q713XCOAD1
p.K188EPAAD1
p.P654RACC1
p.R387HUCEC1
p.G709RSKCM1
p.N336KLIHC1
p.G69CSTAD1
p.S299FSKCM1
p.R505CSKCM1
p.M558VLUAD1
p.L300FSKCM1
p.R110XCOAD1
p.T260MSTAD1
p.R501HSTAD1
p.H120QKIRC1
p.S621AMESO1
p.G543RSKCM1
p.K444*SKCM1
p.L697PDLBC1
p.D494NUCEC1
p.D494YBLCA1
p.S621CBRCA1
p.H578YSARC1
p.T264MBLCA1
p.K151NUCEC1
p.P219LBLCA1
p.P631SSKCM1
p.R168QSTAD1
p.K402RBRCA1
p.R660QBLCA1
p.M117IBLCA1
p.S269ILUSC1
p.V44LLUAD1
p.V573MDLBC1
p.A180VBLCA1
p.K444XSKCM1
p.G259RSKCM1
p.L611HKIRP1
p.V434LCHOL1
p.E175KSKCM1
p.P617SSKCM1
p.R298CKIRC1
p.R370PLUAD1
p.R387CLUAD1
p.I118THNSC1
p.S217LPRAD1
p.S339FLUSC1
p.R567CBLCA1
p.G541VTHYM1
p.T325MSTAD1


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TissGeneCNV for HUNK

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for HUNK

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNAAW937598HUNK-CNOT10chr21:33312316chr3:32810076
Chimerdb3.0FusionScanBRCATCGA-EW-A1J2-01AHUNK-MRAPOut-of-Framechr21:33297072chr21:33678950
Chimerdb3.0TopHat-FusionLUADTCGA-O1-A52J-01AHUNK-RUNX1Out-of-Framechr21:33291015chr21:36206706
Chimerdb3.0TopHat-FusionLUADTCGA-O1-A52J-01AHUNK-RUNX1Out-of-Framechr21:33279931chr21:36206706
TCGAfusionPortalPRADAHNSCTCGA-CR-7372-01ASIK1-HUNKOut-of-frameChr21:44845287Chr21:33312477
TCGAfusionPortalPRADAKIRCTCGA-CJ-5681-01AHUNK-MAMLD1In-frameChr21:33246248ChrX:149638017
TCGAfusionPortalPRADALUADTCGA-05-4398-01ABRWD1-HUNKOut-of-frameChr21:40641825Chr21:33340562


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TissGeneNet for HUNK

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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COAD (tumor)COAD (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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HNSC (tumor)HNSC (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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KICH (tumor)KICH (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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KIRC (tumor)KIRC (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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KIRP (tumor)KIRP (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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LIHC (tumor)LIHC (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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LUAD (tumor)LUAD (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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LUSC (tumor)LUSC (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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PRAD (tumor)PRAD (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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STAD (tumor)STAD (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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THCA (tumor)THCA (normal)
HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (tumor)HUNK, HNF4A, PPP2CA, PPP2R1A, LNX1, CFL1, RABEP1 (normal)
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TissGeneProg for HUNK

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for HUNK
TissGeneDrug for HUNK

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for HUNK

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C1959635Parvovirus B19 (disease)5BeFree
umls:C0006142Malignant neoplasm of breast2BeFree
umls:C0678222Breast Carcinoma2BeFree
umls:C0001418Adenocarcinoma1BeFree
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent1GAD
umls:C0013080Down Syndrome1CTD_human
umls:C0019045Hemoglobinopathies1BeFree
umls:C0027819Neuroblastoma1GAD
umls:C0032584polyps1BeFree
umls:C0040336Tobacco Use Disorder1GAD
umls:C0042900Vitiligo1GAD
umls:C0151786Muscle Weakness1CTD_human
umls:C0596263Carcinogenesis1BeFree
umls:C1458155Mammary Neoplasms1LHGDN
umls:C1511291Breast Cancer Model1BeFree