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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for HTR2C
check button Gene summary
Basic gene informationGene symbolHTR2C
Gene name5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled
Synonyms5-HT2C|5-HTR2C|5HTR2C|HTR1C
CytomapUCSC genome browser: Xq24
Type of geneprotein-coding
RefGenesNM_000868.2,
NM_001256760.1,NM_001256761.1,
Description5-HT-1C5-HT-2C5-HT1C5-hydroxytryptamine receptor 1C5-hydroxytryptamine receptor 2C5-hydroxytryptamine receptor-1cserotonin 5-HT-2C receptorserotonin receptor 2C
Modification date20141222
dbXrefs MIM : 312861
HGNC : HGNC
Ensembl : ENSG00000147246
HPRD : 02429
Vega : OTTHUMG00000022226
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_HTR2C
BioGPS: 3358
PathwayNCI Pathway Interaction Database: HTR2C
KEGG: HTR2C
REACTOME: HTR2C
Pathway Commons: HTR2C
ContextiHOP: HTR2C
ligand binding site mutation search in PubMed: HTR2C
UCL Cancer Institute: HTR2C
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesHPA,TiGER
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)BrainTestis
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)GBM,LGGTGCT
Reference showing the relevant tissue of HTR2C
Description by TissGene annotationsHave significant anti-correlated miRNA
Fused withOncogene
Fused withTSGene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0006182cGMP biosynthetic process12970106
GO:0006874cellular calcium ion homeostasis19057895
GO:0007200phospholipase C-activating G-protein coupled receptor signaling pathway12970106
GO:0010513positive regulation of phosphatidylinositol biosynthetic process19057895
GO:0042493response to drug18703043
GO:0070374positive regulation of ERK1 and ERK2 cascade19057895
GO:0006182cGMP biosynthetic process12970106
GO:0006874cellular calcium ion homeostasis19057895
GO:0007200phospholipase C-activating G-protein coupled receptor signaling pathway12970106
GO:0010513positive regulation of phosphatidylinositol biosynthetic process19057895
GO:0042493response to drug18703043
GO:0070374positive regulation of ERK1 and ERK2 cascade19057895


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TissGeneExp for HTR2C

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
HNSC2.257524137-0.7083944682.9659186052.93E-094.15E-08
LUSC2.835026599-0.9299930093.7650196082.20E-141.24E-13
BLCA3.0685095710.8634937822.2050157890.01080.047657143
ESCA2.956705743-0.7711942573.72790.002110.02334099
STAD0.006242959-1.0653851661.0716281250.004880.018857595


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TissGene-miRNA for HTR2C

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples
UCShsa-miR-382-3pMIMAT00226970.023-0.3256
UCShsa-miR-26b-5pMIMAT00000830.0025-0.456


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TissGeneMut for HTR2C
TissGeneSNV for HTR2C

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.R183CSKCM8
p.P232SSKCM2
p.G164RSKCM2
p.W130XSKCM2
p.W130*SKCM2
p.E306KSKCM2
p.S149LSKCM2
p.R170CSKCM2
p.S132YUCEC2
p.E255KSKCM2
p.F317LUCEC2
p.L73FSKCM1
p.R219WSTAD1
p.M1LCOAD1
p.R168WPRAD1
p.I64TSARC1
p.G408WLUAD1
p.A32GLIHC1
p.W55ROV1
p.R168QUCEC1
p.C146SLUSC1
p.A180VLGG1
p.V74LKIRC1
p.L333QPAAD1
p.P280SLUSC1
p.I65LREAD1
p.D174NSKCM1
p.R288QSKCM1
p.G43ASTAD1
p.T228MHNSC1
p.L95IREAD1
p.T228RLIHC1
p.P29THNSC1
p.P365HUCEC1
p.S310LBRCA1
p.K348ESTAD1
p.W161XSKCM1
p.S110PUCEC1
p.V208MOV1
p.R157HBRCA1
p.G193AMESO1
p.W55GLUAD1
p.E425*LIHC1
p.P211QLUAD1
p.A195TUCEC1
p.P121SESCA1
p.V215IBLCA1
p.L336HSKCM1
p.F328VPAAD1
p.V389ISKCM1
p.Q244PSKCM1
p.S167LSKCM1
p.P393LOV1
p.A7VLGG1
p.I181SUCEC1
p.S167LPAAD1
p.I181MSTAD1
p.R243QUCEC1
p.G251SCOAD1
p.S310LCOAD1
p.R417WSKCM1
p.F214LUCEC1
p.V221ISTAD1
p.A77SSTAD1
p.N204SUCEC1
p.R45CPRAD1
p.V129ILGG1
p.C235GLUAD1
p.R287CHNSC1
p.D151YUCEC1
p.L104ILUAD1
p.C325RCOAD1
p.E197DSTAD1
p.M230VUCEC1
p.R297SLUSC1
p.E425KCOAD1
p.E197KSKCM1
p.T228MUCEC1
p.G44ESKCM1
p.T271MSTAD1
p.L321PREAD1
p.M1ILUSC1
p.E425XLIHC1
p.R417LUCEC1
p.P447SSKCM1
p.V221ISKCM1
p.P56SSTAD1
p.R168QGBM1
p.M323ILUAD1
p.R170CACC1
p.L73ILUAD1
p.P432SUCEC1
p.L441*UCEC1
p.V202MSKCM1
p.P188LOV1
p.E197KCESC1
p.K82NLUAD1
p.W161*SKCM1
p.P188SSKCM1
p.H250QLUAD1
p.D36NPRAD1
p.Q22KOV1
p.L336VOV1
p.R400THNSC1
p.I148KUCEC1
p.N304KLUAD1
p.C23SCOAD1
p.R152WSTAD1
p.G240SCOAD1
p.D160NSKCM1
p.R152WLUSC1
p.V395DSTAD1
p.F263VUCEC1
p.P280LLIHC1
p.A286TSARC1
p.M436ICESC1


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TissGeneCNV for HTR2C

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for HTR2C

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0FusionScanHNSCTCGA-D6-6827-01ARB1-HTR2COut-of-Framechr13:48881542chrX:114141151


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TissGeneNet for HTR2C

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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COAD (tumor)COAD (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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HNSC (tumor)HNSC (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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KICH (tumor)KICH (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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KIRC (tumor)KIRC (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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KIRP (tumor)KIRP (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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LIHC (tumor)LIHC (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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LUAD (tumor)LUAD (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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LUSC (tumor)LUSC (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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PRAD (tumor)PRAD (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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STAD (tumor)STAD (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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THCA (tumor)THCA (normal)
HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (tumor)HTR2C, GNAQ, DLG4, CALM1, ARRB2, LIN7C, SIRT2, APBA1, MPDZ, SNTA1 (normal)
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TissGeneProg for HTR2C

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for HTR2C
TissGeneDrug for HTR2C

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status
DB00247MethysergideAntagonistSmall moleculeApproved
DB00321AmitriptylineBinderSmall moleculeApproved
DB00543AmoxapineAntagonistSmall moleculeApproved
DB00589LisurideAgonistSmall moleculeApproved
DB00696ErgotamineAgonistSmall moleculeApproved
DB00726TrimipramineAntagonistSmall moleculeApproved
DB04871LorcaserinSmall moleculeApproved
DB01191DexfenfluramineAgonistSmall moleculeApproved|Illicit|Withdrawn
DB00193TramadolAntagonistSmall moleculeApproved|Investigational
DB00268RopiniroleAgonistSmall moleculeApproved|Investigational
DB00413PramipexoleUnknownSmall moleculeApproved|Investigational
DB00714ApomorphineAgonistSmall moleculeApproved|Investigational
DB00734RisperidoneAntagonistSmall moleculeApproved|Investigational
DB06594AgomelatineAntagonistSmall moleculeApproved|Investigational
DB09014CaptodiameAntagonistSmall moleculeApproved|Investigational
DB01242ClomipramineAntagonistSmall moleculeApproved|Vet_approved
DB01392YohimbineAntagonistSmall moleculeApproved|Vet_approved


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TissGeneDisease for HTR2C

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0036341Schizophrenia30BeFree,GAD,LHGDN
umls:C0028754Obesity21BeFree,CTD_human,GAD
umls:C0043094Weight Gain15CTD_human,GAD
umls:C2911647Weight Gain Adverse Event13GAD
umls:C0011570Mental Depression12BeFree,GAD
umls:C1269683Major Depressive Disorder11BeFree,GAD,RGD
umls:C0004936Mental disorders9BeFree
umls:C0005586Bipolar Disorder9BeFree,GAD
umls:C0011581Depressive disorder9BeFree
umls:C0041696Unipolar Depression7BeFree,GAD
umls:C0524620Metabolic Syndrome X7BeFree,CTD_human,GAD
umls:C0001973Alcoholic Intoxication, Chronic6BeFree,GAD
umls:C0003469Anxiety Disorders6BeFree,GAD,RGD
umls:C0525045Mood Disorders6BeFree
umls:C0149931Migraine Disorders5BeFree,GAD
umls:C0152115Lingual-Facial-Buccal Dyskinesia5BeFree,GAD
umls:C0686347Tardive Dyskinesia5BeFree,GAD
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent4BeFree,GAD,MGD
umls:C1263846Attention deficit hyperactivity disorder4BeFree,GAD
umls:C0003125Anorexia Nervosa3BeFree,GAD,LHGDN
umls:C0004352Autistic Disorder3BeFree,GAD
umls:C0013473Eating Disorders3BeFree
umls:C0032897Prader-Willi Syndrome3BeFree,MGD
umls:C0038580Substance Dependence3BeFree
umls:C0154723Migraine with Aura3BeFree,GAD,LHGDN
umls:C0233565Bradykinesia3BeFree
umls:C0242422Parkinsonian Disorders3BeFree
umls:C0520679Sleep Apnea, Obstructive3BeFree,GAD
umls:C1510472Drug Dependence3BeFree
umls:C1524032Depression and Suicide3BeFree
umls:C2267227Bulimia Nervosa3BeFree,LHGDN
umls:C0002395Alzheimer's Disease2GAD,LHGDN
umls:C0003123Anorexia2BeFree
umls:C0003944As If Personality2GAD
umls:C0006012Borderline Personality Disorder2BeFree
umls:C0007222Cardiovascular Diseases2BeFree
umls:C0013386Dyskinesia, Drug-Induced2BeFree,GAD
umls:C0027819Neuroblastoma2BeFree
umls:C0030193Pain2BeFree,RGD
umls:C0032002Pituitary Diseases2BeFree
umls:C0033038Premature Ejaculation2BeFree
umls:C0033975Psychotic Disorders2BeFree,GAD
umls:C0036572Seizures2BeFree
umls:C0038587Substance Withdrawal Syndrome2CTD_human,GAD
umls:C0040517Gilles de la Tourette syndrome2BeFree,GAD
umls:C0085762Alcohol abuse2GAD
umls:C0233849Personality Traits2GAD
umls:C0349204Nonorganic psychosis2BeFree
umls:C0700095Central neuroblastoma2BeFree
umls:C0871189Psychotic symptom2BeFree
umls:C1839839MAJOR AFFECTIVE DISORDER 22BeFree,GAD
umls:C1852197MAJOR AFFECTIVE DISORDER 12BeFree,GAD
umls:C1970943MAJOR AFFECTIVE DISORDER 42BeFree,GAD
umls:C1970944MAJOR AFFECTIVE DISORDER 52BeFree,GAD
umls:C1970945MAJOR AFFECTIVE DISORDER 62BeFree,GAD
umls:C2700438MAJOR AFFECTIVE DISORDER 72BeFree,GAD
umls:C2700439MAJOR AFFECTIVE DISORDER 82BeFree,GAD
umls:C2700440MAJOR AFFECTIVE DISORDER 92BeFree,GAD
umls:C0004782Basal Ganglia Diseases1GAD
umls:C0006287Bronchopulmonary Dysplasia1BeFree
umls:C0006370Bulimia1GAD
umls:C0011847Diabetes1BeFree
umls:C0011849Diabetes Mellitus1BeFree
umls:C0013146Drug abuse1BeFree
umls:C0013384Dyskinetic syndrome1BeFree
umls:C0014130Endocrine System Diseases1GAD
umls:C0014556Epilepsy, Temporal Lobe1GAD
umls:C0015371Extrapyramidal Disorders1BeFree
umls:C0015672Fatigue1GAD
umls:C0015674Chronic Fatigue Syndrome1GAD
umls:C0018817Atrial Septal Defects1BeFree
umls:C0020459Hyperinsulinism1BeFree
umls:C0023904Liver Neoplasms, Experimental1RGD
umls:C0026837Muscle Rigidity1BeFree
umls:C0027796Neuralgia1BeFree
umls:C0030567Parkinson Disease1GAD
umls:C0034040Puerperal Disorders1GAD
umls:C0038443Stress, Psychological1BeFree
umls:C0041341Tuberous Sclerosis1BeFree,GAD
umls:C0085159Seasonal Affective Disorder1BeFree,GAD
umls:C0085271Self-Injurious Behavior1BeFree
umls:C0085631Agitation1BeFree
umls:C0086132Depressive Symptoms1BeFree
umls:C0086209Emotional Stress1BeFree
umls:C0152025Polyneuropathy1BeFree
umls:C0154409Recurrent major depressive episodes1BeFree
umls:C0162550Akathisia, Drug-Induced1GAD
umls:C0221765Chronic schizophrenia1BeFree
umls:C0233397Psychological symptom1BeFree
umls:C0233777Hallucinosis1BeFree
umls:C0234379Resting Tremor1BeFree
umls:C0236969Substance-Related Disorders1RGD
umls:C0237873Physiological Sexual Disorders1GAD
umls:C0302847major affective disorder1BeFree
umls:C0338614Psychotic episode1BeFree
umls:C0338715Drug-induced depressive state1BeFree
umls:C0424295Hyperactive behavior1CTD_human
umls:C0458960Peripheral neuropathic pain1BeFree
umls:C0518010body mass1GAD
umls:C0524528Pervasive Development Disorder1BeFree
umls:C0600427Cocaine Dependence1BeFree
umls:C0740858Substance abuse problem1BeFree
umls:C0746556metabolic disturbance1BeFree
umls:C0851578Sleep Disorders1GAD
umls:C0853193Bipolar I disorder1BeFree
umls:C1510586Autism Spectrum Disorders1BeFree
umls:C2911645Weight Loss Adverse Event1GAD