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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for IL7R
check button Gene summary
Basic gene informationGene symbolIL7R
Gene nameinterleukin 7 receptor
SynonymsCD127|CDW127|IL-7R-alpha|IL7RA|ILRA
CytomapUCSC genome browser: 5p13
Type of geneprotein-coding
RefGenesNM_002185.3,
NR_120485.1,
DescriptionCD127 antigenIL-7 receptor subunit alphaIL-7R subunit alphaIL-7RAinterleukin 7 receptor alpha chaininterleukin 7 receptor isoform H5-6interleukin-7 receptor subunit alpha
Modification date20141221
dbXrefs MIM : 146661
HGNC : HGNC
Ensembl : ENSG00000168685
HPRD : 00893
Vega : OTTHUMG00000090791
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_IL7R
BioGPS: 3575
PathwayNCI Pathway Interaction Database: IL7R
KEGG: IL7R
REACTOME: IL7R
Pathway Commons: IL7R
ContextiHOP: IL7R
ligand binding site mutation search in PubMed: IL7R
UCL Cancer Institute: IL7R
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)LungThymus
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)LUAD,LUSCTHYM
Reference showing the relevant tissue of IL7R
Description by TissGene annotationsCancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for IL7R

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LUSC2.2299490844.786107908-2.5561588241.47E-159.82E-15
KIRC1.514017548-0.1987616181.7127791671.89E-075.15E-07
LIHC-1.7983478960.291670104-2.0900187.55E-074.17E-06
LUAD2.7382981044.609017069-1.8707189665.39E-113.32E-10
THCA-0.9827493540.851650646-1.83448.72E-062.86E-05
HNSC1.9309818250.7013446151.2296372090.0001030.000458911


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TissGene-miRNA for IL7R

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for IL7R
TissGeneSNV for IL7R

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.S240LSKCM5
p.W264*SKCM3
p.H279YSKCM3
p.S54LLUSC2
p.S413NSKCM2
p.G362ESKCM2
p.R206*SKCM2
p.E202KSKCM2
p.G142ESKCM2
p.E95DBLCA1
p.Q45HLUSC1
p.Q445*SKCM1
p.G394DGBM1
p.R86KSKCM1
p.I107LUCEC1
p.G342RSKCM1
p.P380TLUAD1
p.I126TLUAD1
p.R227KSKCM1
p.D29YREAD1
p.S335FBLCA1
p.S454RLUAD1
p.N182YBRCA1
p.M164VBRCA1
p.F213CLUSC1
p.G434CLUAD1
p.L304QLUSC1
p.K395MLUAD1
p.F361YLUAD1
p.F455LESCA1
p.Y92CUCEC1
p.M238IBLCA1
p.E230*LUAD1
p.F251VSKCM1
p.R291KSKCM1
p.R391MHNSC1
p.F251LUCEC1
p.L406RSTAD1
p.D29NSKCM1
p.M200VSARC1
p.R267MTHCA1
p.I271NHNSC1
p.F12ISKCM1
p.L116IUCEC1
p.S105GLIHC1
p.R206XSTAD1
p.G236ESKCM1
p.D36ETHYM1
p.F99LUCEC1
p.G142RSKCM1
p.V262ABRCA1
p.Q445PLUAD1
p.W273CLUAD1
p.E230XESCA1
p.S423FSKCM1
p.K204ISKCM1
p.C390*LUAD1
p.W273CBLCA1
p.M10ISKCM1
p.K161QCOAD1
p.I208TREAD1
p.S13FSKCM1
p.C390SLUAD1
p.K157NGBM1
p.S440FSKCM1
p.L404FSKCM1
p.V311MLUSC1
p.V272ISKCM1
p.S13CBRCA1
p.P222TLUAD1
p.S384YLUAD1
p.K114QUCEC1
p.G20*LUAD1
p.P277SSKCM1
p.C118XACC1
p.E319KSKCM1
p.A379TSTAD1
p.R291TTHCA1
p.T56SOV1
p.K395TSTAD1
p.G5CCOAD1
p.P300SSKCM1
p.F40SSTAD1
p.G372ESKCM1
p.S223RSKCM1
p.R206*STAD1
p.P347SHNSC1
p.P132SSKCM1
p.P430SSKCM1
p.S360GTHCA1
p.T244ICOAD1
p.K395TSKCM1
p.K157NUCEC1
p.S44ISTAD1
p.W217*SKCM1
p.K292_spliceLUSC1
p.K395NUCEC1
p.S366FSKCM1
p.T152SSKCM1
p.E113KCOAD1
p.E392KSKCM1
p.D134YLUAD1
p.N151KLUSC1
p.S207FSKCM1
p.E95KSKCM1
p.E72KSKCM1
p.V450ISTAD1
p.E172ALUAD1
p.G28RSKCM1
p.R386KHNSC1
p.T427ILUAD1
p.T149AREAD1
p.S351FSKCM1
p.D313YKIRP1
p.M238IUCEC1
p.I94MBLCA1
p.K97NUCEC1
p.W217CLUAD1
p.S383FSKCM1
p.F250LSKCM1
p.W178RLGG1
p.D353NSKCM1
p.R206LESCA1
p.Q171KLUAD1
p.K337NHNSC1
p.P329SSKCM1
p.A199TSKCM1
p.N293KSKCM1
p.E336KSKCM1
p.D312EBLCA1
p.G442RHNSC1
p.E90DCOAD1
p.L388VCOAD1
p.L405MPAAD1
p.L190FCOAD1
p.L421FSKCM1
p.T410AOV1
p.P329HUCEC1
p.I271LLGG1
p.M238TUCEC1
p.Q171KPRAD1
p.D29HSKCM1
p.W217XSKCM1
p.N176YOV1
p.M452ILUAD1
p.R206XSKCM1


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TissGeneCNV for IL7R

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for IL7R

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP


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TissGeneNet for IL7R

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
IL7R, NFKB1, MAPK1, STAT3, MYL6, CALM1, PRDX2, PIK3R1, PTK2B, PEBP1, ATP5B, HSPB1, IL2RG, SOD1, ECH1, PARK7, GSN, CAPNS1, TUBB6, LGALS1, PRDX6 (tumor)IL7R, JAK1, NFKB1, CBL, LYN, STAT1, PRDX2, FYN, PTK2B, VCL, JAK3, PEBP1, F13A1, MSN, IL2RG, IL7, SOD2, COTL1, PLEK, NAPA, LCP1 (normal)
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COAD (tumor)COAD (normal)
IL7R, RELA, LYN, ACTB, VCL, JAK3, TXN, HSPB1, IL2RG, HSPD1, NSFL1C, FGG, CAPZA1, ZYX, CCT5, TAGLN2, TUBB6, LGALS1, LCP1, PPBP, CRLF2 (tumor)IL7R, JAK1, NFKB1, BCL6, STAT3, FYN, APRT, VCL, JAK3, PEBP1, F13A1, MSN, TUBA1A, TXN, SOD1, GSN, SOD2, LGALS1, PLEK, LCP1, CRLF2 (normal)
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HNSC (tumor)HNSC (normal)
IL7R, YWHAZ, EZR, TPM4, NFKB1, MAPK1, STAT3, HSPA8, CBL, YWHAB, ACTB, VCL, PEBP1, MSN, IL2RG, SOD1, CAPZA1, MAPRE1, PLEK, LCP1, CCS (tumor)IL7R, JAK1, NFKB1, MAPK1, CBL, MYL6, FYN, PIK3R1, APRT, VCL, PEBP1, F13A1, MSN, HSPB1, SOD1, PLEK, GSTP1, ERP29, LCP1, PRDX6, CCS (normal)
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KICH (tumor)KICH (normal)
IL7R, EZR, PRDX2, FYN, PDLIM1, MAPK3, JAK3, PEBP1, F13A1, MSN, HSPA6, ENO1, STAT5A, FGG, IL7, COTL1, ITGA2B, PLEK, TUBB1, SRI, LCP1 (tumor)IL7R, JAK1, TPM4, NFKB1, STAT3, LYN, STAT1, APRT, RAD21, VCL, PEBP1, F13A1, MSN, TPM3, IL2RG, PDIA6, IL7, COTL1, PLEK, NAPA, LCP1 (normal)
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KIRC (tumor)KIRC (normal)
IL7R, TUBB3, ARPC5, FYN, PDLIM1, JAK3, PEBP1, F13A1, MSN, TUBA1A, HSPA6, ENO1, ATP5B, HSPA1L, IL7, COTL1, ITGA2B, LGALS1, PLEK, TUBB1, LCP1 (tumor)IL7R, JAK1, NFKB1, STAT3, CBL, LYN, STAT1, PIK3R1, APRT, PEBP1, F13A1, MSN, TPM3, HSPB1, IL2RG, SOD1, CAPNS1, IL7, PLEK, NAPA, LCP1 (normal)
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KIRP (tumor)KIRP (normal)
IL7R, GRB2, EZR, TUBB3, PRDX2, PDLIM1, MAPK3, JAK3, PEBP1, F13A1, MSN, TPM3, TUBA1A, ENO1, ATP5B, STAT5A, IL7, ITGA2B, PLEK, TUBB1, LCP1 (tumor)IL7R, JAK1, NFKB1, MAPK1, BCL6, STAT3, CBL, LYN, STAT1, APRT, PTK2B, VCL, F13A1, IL2RG, PARK7, GSN, IL7, PLEK, LCP1, PRDX6, CCS (normal)
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LIHC (tumor)LIHC (normal)
IL7R, CBL, LYN, YWHAB, STAT1, PRDX2, JAK3, PEBP1, F13A1, MSN, IL2RG, SOD1, ECH1, CAPZA1, COTL1, PLEK, ERP29, LCP1, PRDX6, SH3BGRL, CCS (tumor)IL7R, JAK1, TPM4, NFKB1, CBL, LYN, STAT1, FYN, LDHB, VCL, JAK3, F13A1, MSN, IL2RG, PARK7, IL7, COTL1, PLEK, LCP1, SH3BGRL, CCS (normal)
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LUAD (tumor)LUAD (normal)
IL7R, TUBB3, STAT5B, GAPDH, FYN, LDHB, PDIA3, HSPA5, TUBA1A, APOA1, ENO1, HSPB1, GSN, P4HB, TAGLN2, ITGA2B, CFL2, GSTP1, TUBB1, ERP29, TSLP (tumor)IL7R, JAK1, NFKB1, STAT5B, STAT1, FYN, PIK3R1, PTK2B, JAK3, F13A1, MSN, IL2RG, STAT5A, IL7, SOD2, COTL1, PLEK, GSTP1, LCP1, SH3BGRL, CCS (normal)
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LUSC (tumor)LUSC (normal)
IL7R, TUBB3, STAT5B, STAT1, PIK3R1, RAD21, HSPA5, PSME1, APOA1, ENO1, HSPB1, IL2RG, P4HB, MAPRE1, ITGA2B, PLEK, TUBB1, ERP29, LCP1, PPBP, CCS (tumor)IL7R, JAK1, TPM4, ACTB, FYN, JAK3, F13A1, MSN, MYL3, IL2RG, STAT5A, S100A4, ZYX, IL7, SOD2, COTL1, LGALS1, PLEK, GSTP1, LCP1, SH3BGRL (normal)
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PRAD (tumor)PRAD (normal)
IL7R, MAPK1, STAT3, GAPDH, STAT1, PRDX2, PIK3R1, JAK3, F13A1, TXN, CFL1, ARHGDIA, IL2RG, SOD1, S100A4, CAPNS1, IL7, PLEK, NAPA, ERP29, CCS (tumor)IL7R, JAK1, NFKB1, STAT3, CBL, STAT1, PRDX2, PIK3R1, VCL, JAK3, PEBP1, F13A1, MSN, TXN, IL2RG, ECH1, PARK7, CAPNS1, IL7, PLEK, CCS (normal)
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STAD (tumor)STAD (normal)
IL7R, MAPK1, LYN, CALM1, ALB, PTK2B, CALR, PDIA3, JAK3, HSPA5, PSME1, IL2RG, PDIA6, IL7, TAGLN2, TUBB6, COTL1, PLEK, ERP29, LCP1, PRDX6 (tumor)IL7R, YWHAZ, JAK1, NFKB1, STAT3, STAT5B, CBL, FYN, PIK3R1, PTK2B, JAK3, F13A1, MSN, TXN, IL2RG, HSPD1, STAT5A, PLEK, LCP1, CRLF2, SH3BGRL (normal)
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THCA (tumor)THCA (normal)
IL7R, JAK1, TPM4, NFKB1, BCL6, STAT5B, CBL, LYN, STAT1, PTK2B, JAK3, PEBP1, MSN, IL2RG, PARK7, NSFL1C, TF, CAPZA1, IL7, PLEK, LCP1 (tumor)IL7R, JAK1, TPM4, NFKB1, STAT3, LYN, STAT1, PIK3R1, JAK3, PEBP1, F13A1, TPM3, IL2RG, ECH1, PARK7, IL7, SOD2, PLEK, NAPA, LCP1, CCS (normal)
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TissGeneProg for IL7R

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for IL7R
TissGeneDrug for IL7R

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for IL7R

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0026769Multiple Sclerosis42BeFree,CTD_human,GAD,GWASCAT,LHGDN
umls:C0019693HIV Infections23BeFree,GAD,LHGDN
umls:C0085110Severe Combined Immunodeficiency13BeFree,CLINVAR,GAD
umls:C0011854Diabetes Mellitus, Insulin-Dependent9BeFree,GAD
umls:C0023449Acute lymphocytic leukemia8BeFree
umls:C0242379Malignant neoplasm of lung7BeFree,GAD
umls:C0684249Carcinoma of lung6BeFree
umls:C0004364Autoimmune Diseases5BeFree
umls:C0023418leukemia5BeFree
umls:C1961099Precursor T-Cell Lymphoblastic Leukemia-Lymphoma5BeFree,CTD_human
umls:C1961102Precursor Cell Lymphoblastic Leukemia Lymphoma5BeFree
umls:C0004096Asthma3BeFree,GAD
umls:C0024312Lymphopenia3BeFree,GAD
umls:C0026269Mitral Valve Stenosis3BeFree
umls:C0042769Virus Diseases3BeFree
umls:C1801959Histiocytic medullary reticulosis (disorder)3BeFree
umls:C0003873Rheumatoid Arthritis2BeFree,GAD
umls:C0007131Non-Small Cell Lung Carcinoma2BeFree
umls:C0011303Demyelinating Diseases2BeFree
umls:C0019163Hepatitis B2BeFree
umls:C0021400Influenza2BeFree
umls:C0036202Sarcoidosis2BeFree,GAD
umls:C0279583T-cell childhood acute lymphoblastic leukemia2BeFree
umls:C1272352Deficiency of vitamin D32BeFree
umls:C1279481X-Linked Combined Immunodeficiency Diseases2BeFree
umls:C3495559Juvenile arthritis2BeFree,GAD
umls:C3714757Juvenile rheumatoid arthritis2BeFree
umls:C0005684Malignant neoplasm of urinary bladder1GAD
umls:C0006142Malignant neoplasm of breast1BeFree
umls:C0007137Squamous cell carcinoma1BeFree
umls:C0007193Cardiomyopathy, Dilated1BeFree
umls:C0007621Neoplastic Cell Transformation1CTD_human
umls:C0008031Chest Pain1BeFree
umls:C0009324Ulcerative Colitis1CTD_human,GWASCAT
umls:C0009402Colorectal Carcinoma1BeFree
umls:C0011615Dermatitis, Atopic1GAD
umls:C0013080Down Syndrome1BeFree
umls:C0014072Experimental Autoimmune Encephalomyelitis1BeFree
umls:C0014175Endometriosis1CTD_human
umls:C0018133Graft-vs-Host Disease1BeFree
umls:C0019196Hepatitis C1BeFree
umls:C0020503Hyperparathyroidism, Secondary1GAD
umls:C0020517Hypersensitivity1GAD
umls:C0022504Kaposi Varicelliform Eruption1GAD
umls:C0023467Leukemia, Myelocytic, Acute1BeFree
umls:C0023787Lipodystrophy1BeFree
umls:C0023892Biliary cirrhosis1CTD_human
umls:C0024115Lung diseases1GAD
umls:C0024117Chronic Obstructive Airway Disease1GAD
umls:C0024266Lymphocytic Choriomeningitis1BeFree
umls:C0024305Lymphoma, Non-Hodgkin1GAD
umls:C0024307Lymphomatoid Granulomatosis1GAD
umls:C0024530Malaria1BeFree
umls:C0024535Malaria, Falciparum1BeFree
umls:C0025007Measles1BeFree
umls:C0026896Myasthenia Gravis1BeFree
umls:C0027819Neuroblastoma1BeFree
umls:C0028754Obesity1BeFree
umls:C0029118Opportunistic Infections1BeFree
umls:C0030354Papilloma1BeFree
umls:C0035920Rubella1BeFree
umls:C0038356Stomach Neoplasms1GAD
umls:C0040336Tobacco Use Disorder1GAD
umls:C0079487Helicobacter Infections1GAD
umls:C0079744Diffuse Large B-Cell Lymphoma1GAD
umls:C0085129Bronchial Hyperreactivity1GAD
umls:C0085669Acute leukemia1BeFree
umls:C0153014Non-arthropod borne lymphocytic choriomeningitis1BeFree
umls:C0220615Adult Acute Myeloblastic Leukemia1BeFree
umls:C0242596Neoplasm, Residual1BeFree
umls:C0264220Chronic disease of respiratory system1BeFree
umls:C0276199Canarypox (disorder)1BeFree
umls:C0340288Stable angina1BeFree
umls:C0376545Hematologic Neoplasms1BeFree
umls:C0598766Leukemogenesis1BeFree
umls:C0678222Breast Carcinoma1BeFree
umls:C0700095Central neuroblastoma1BeFree
umls:C0746104lung disease granulomatous1BeFree
umls:C0751688Malignant Squamous Cell Neoplasm1BeFree
umls:C0867389Chronic graft-versus-host disease1BeFree
umls:C0948089Acute Coronary Syndrome1BeFree
umls:C1142553Primary HIV infection1BeFree
umls:C1280433Lipoatrophy1BeFree
umls:C1292769Precursor B-cell lymphoblastic leukemia1BeFree
umls:C1527249Colorectal Cancer1BeFree
umls:C3809768IMMUNODEFICIENCY 131BeFree
umls:C1833275Severe Combined Immunodeficiency, Autosomal Recessive, T Cell-Negative, B Cell-Positive, NK Cell-Negative0CTD_human
umls:C1837028Severe Combined Immunodeficiency, Autosomal Recessive, T Cell Negative, B Cell Positive, NK Cell Positive0CLINVAR,CTD_human,ORPHANET
umls:C2700553Omenn Syndrome0ORPHANET