TissGeneSummary for IL7R |
Gene summary |
Basic gene information | Gene symbol | IL7R |
Gene name | interleukin 7 receptor | |
Synonyms | CD127|CDW127|IL-7R-alpha|IL7RA|ILRA | |
Cytomap | UCSC genome browser: 5p13 | |
Type of gene | protein-coding | |
RefGenes | NM_002185.3, NR_120485.1, | |
Description | CD127 antigenIL-7 receptor subunit alphaIL-7R subunit alphaIL-7RAinterleukin 7 receptor alpha chaininterleukin 7 receptor isoform H5-6interleukin-7 receptor subunit alpha | |
Modification date | 20141221 | |
dbXrefs | MIM : 146661 | |
HGNC : HGNC | ||
Ensembl : ENSG00000168685 | ||
HPRD : 00893 | ||
Vega : OTTHUMG00000090791 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_IL7R | |
BioGPS: 3575 | ||
Pathway | NCI Pathway Interaction Database: IL7R | |
KEGG: IL7R | ||
REACTOME: IL7R | ||
Pathway Commons: IL7R | ||
Context | iHOP: IL7R | |
ligand binding site mutation search in PubMed: IL7R | ||
UCL Cancer Institute: IL7R | ||
Assigned class in TissGDB* | C | |
Included tissue-specific gene expression resources | TiGER,GTEx | |
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | LungThymus | |
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | LUAD,LUSCTHYM | |
Reference showing the relevant tissue of IL7R | ||
Description by TissGene annotations | Cancer gene |
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO term | PubMed ID |
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TissGeneExp for IL7R |
Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
LUSC | 2.229949084 | 4.786107908 | -2.556158824 | 1.47E-15 | 9.82E-15 |
KIRC | 1.514017548 | -0.198761618 | 1.712779167 | 1.89E-07 | 5.15E-07 |
LIHC | -1.798347896 | 0.291670104 | -2.090018 | 7.55E-07 | 4.17E-06 |
LUAD | 2.738298104 | 4.609017069 | -1.870718966 | 5.39E-11 | 3.32E-10 |
THCA | -0.982749354 | 0.851650646 | -1.8344 | 8.72E-06 | 2.86E-05 |
HNSC | 1.930981825 | 0.701344615 | 1.229637209 | 0.000103 | 0.000458911 |
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TissGene-miRNA for IL7R |
Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
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TissGeneMut for IL7R |
TissGeneSNV for IL7R |
nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
- nsSNVs sorted by frequency. |
AAchange | Cancer type | # samples |
p.S240L | SKCM | 5 |
p.W264* | SKCM | 3 |
p.H279Y | SKCM | 3 |
p.S54L | LUSC | 2 |
p.S413N | SKCM | 2 |
p.G362E | SKCM | 2 |
p.R206* | SKCM | 2 |
p.E202K | SKCM | 2 |
p.G142E | SKCM | 2 |
p.E95D | BLCA | 1 |
p.Q45H | LUSC | 1 |
p.Q445* | SKCM | 1 |
p.G394D | GBM | 1 |
p.R86K | SKCM | 1 |
p.I107L | UCEC | 1 |
p.G342R | SKCM | 1 |
p.P380T | LUAD | 1 |
p.I126T | LUAD | 1 |
p.R227K | SKCM | 1 |
p.D29Y | READ | 1 |
p.S335F | BLCA | 1 |
p.S454R | LUAD | 1 |
p.N182Y | BRCA | 1 |
p.M164V | BRCA | 1 |
p.F213C | LUSC | 1 |
p.G434C | LUAD | 1 |
p.L304Q | LUSC | 1 |
p.K395M | LUAD | 1 |
p.F361Y | LUAD | 1 |
p.F455L | ESCA | 1 |
p.Y92C | UCEC | 1 |
p.M238I | BLCA | 1 |
p.E230* | LUAD | 1 |
p.F251V | SKCM | 1 |
p.R291K | SKCM | 1 |
p.R391M | HNSC | 1 |
p.F251L | UCEC | 1 |
p.L406R | STAD | 1 |
p.D29N | SKCM | 1 |
p.M200V | SARC | 1 |
p.R267M | THCA | 1 |
p.I271N | HNSC | 1 |
p.F12I | SKCM | 1 |
p.L116I | UCEC | 1 |
p.S105G | LIHC | 1 |
p.R206X | STAD | 1 |
p.G236E | SKCM | 1 |
p.D36E | THYM | 1 |
p.F99L | UCEC | 1 |
p.G142R | SKCM | 1 |
p.V262A | BRCA | 1 |
p.Q445P | LUAD | 1 |
p.W273C | LUAD | 1 |
p.E230X | ESCA | 1 |
p.S423F | SKCM | 1 |
p.K204I | SKCM | 1 |
p.C390* | LUAD | 1 |
p.W273C | BLCA | 1 |
p.M10I | SKCM | 1 |
p.K161Q | COAD | 1 |
p.I208T | READ | 1 |
p.S13F | SKCM | 1 |
p.C390S | LUAD | 1 |
p.K157N | GBM | 1 |
p.S440F | SKCM | 1 |
p.L404F | SKCM | 1 |
p.V311M | LUSC | 1 |
p.V272I | SKCM | 1 |
p.S13C | BRCA | 1 |
p.P222T | LUAD | 1 |
p.S384Y | LUAD | 1 |
p.K114Q | UCEC | 1 |
p.G20* | LUAD | 1 |
p.P277S | SKCM | 1 |
p.C118X | ACC | 1 |
p.E319K | SKCM | 1 |
p.A379T | STAD | 1 |
p.R291T | THCA | 1 |
p.T56S | OV | 1 |
p.K395T | STAD | 1 |
p.G5C | COAD | 1 |
p.P300S | SKCM | 1 |
p.F40S | STAD | 1 |
p.G372E | SKCM | 1 |
p.S223R | SKCM | 1 |
p.R206* | STAD | 1 |
p.P347S | HNSC | 1 |
p.P132S | SKCM | 1 |
p.P430S | SKCM | 1 |
p.S360G | THCA | 1 |
p.T244I | COAD | 1 |
p.K395T | SKCM | 1 |
p.K157N | UCEC | 1 |
p.S44I | STAD | 1 |
p.W217* | SKCM | 1 |
p.K292_splice | LUSC | 1 |
p.K395N | UCEC | 1 |
p.S366F | SKCM | 1 |
p.T152S | SKCM | 1 |
p.E113K | COAD | 1 |
p.E392K | SKCM | 1 |
p.D134Y | LUAD | 1 |
p.N151K | LUSC | 1 |
p.S207F | SKCM | 1 |
p.E95K | SKCM | 1 |
p.E72K | SKCM | 1 |
p.V450I | STAD | 1 |
p.E172A | LUAD | 1 |
p.G28R | SKCM | 1 |
p.R386K | HNSC | 1 |
p.T427I | LUAD | 1 |
p.T149A | READ | 1 |
p.S351F | SKCM | 1 |
p.D313Y | KIRP | 1 |
p.M238I | UCEC | 1 |
p.I94M | BLCA | 1 |
p.K97N | UCEC | 1 |
p.W217C | LUAD | 1 |
p.S383F | SKCM | 1 |
p.F250L | SKCM | 1 |
p.W178R | LGG | 1 |
p.D353N | SKCM | 1 |
p.R206L | ESCA | 1 |
p.Q171K | LUAD | 1 |
p.K337N | HNSC | 1 |
p.P329S | SKCM | 1 |
p.A199T | SKCM | 1 |
p.N293K | SKCM | 1 |
p.E336K | SKCM | 1 |
p.D312E | BLCA | 1 |
p.G442R | HNSC | 1 |
p.E90D | COAD | 1 |
p.L388V | COAD | 1 |
p.L405M | PAAD | 1 |
p.L190F | COAD | 1 |
p.L421F | SKCM | 1 |
p.T410A | OV | 1 |
p.P329H | UCEC | 1 |
p.I271L | LGG | 1 |
p.M238T | UCEC | 1 |
p.Q171K | PRAD | 1 |
p.D29H | SKCM | 1 |
p.W217X | SKCM | 1 |
p.N176Y | OV | 1 |
p.M452I | LUAD | 1 |
p.R206X | SKCM | 1 |
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TissGeneCNV for IL7R |
Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
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TissGeneFusions for IL7R |
Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
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TissGeneNet for IL7R |
Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
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TissGeneProg for IL7R |
Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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TissGeneClin for IL7R |
TissGeneDrug for IL7R |
Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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TissGeneDisease for IL7R |
Disease information associated with TissGene (DisGeNet, 2016-06-01) |
Disease ID | Disease name | # pubmeds | Source |
umls:C0026769 | Multiple Sclerosis | 42 | BeFree,CTD_human,GAD,GWASCAT,LHGDN |
umls:C0019693 | HIV Infections | 23 | BeFree,GAD,LHGDN |
umls:C0085110 | Severe Combined Immunodeficiency | 13 | BeFree,CLINVAR,GAD |
umls:C0011854 | Diabetes Mellitus, Insulin-Dependent | 9 | BeFree,GAD |
umls:C0023449 | Acute lymphocytic leukemia | 8 | BeFree |
umls:C0242379 | Malignant neoplasm of lung | 7 | BeFree,GAD |
umls:C0684249 | Carcinoma of lung | 6 | BeFree |
umls:C0004364 | Autoimmune Diseases | 5 | BeFree |
umls:C0023418 | leukemia | 5 | BeFree |
umls:C1961099 | Precursor T-Cell Lymphoblastic Leukemia-Lymphoma | 5 | BeFree,CTD_human |
umls:C1961102 | Precursor Cell Lymphoblastic Leukemia Lymphoma | 5 | BeFree |
umls:C0004096 | Asthma | 3 | BeFree,GAD |
umls:C0024312 | Lymphopenia | 3 | BeFree,GAD |
umls:C0026269 | Mitral Valve Stenosis | 3 | BeFree |
umls:C0042769 | Virus Diseases | 3 | BeFree |
umls:C1801959 | Histiocytic medullary reticulosis (disorder) | 3 | BeFree |
umls:C0003873 | Rheumatoid Arthritis | 2 | BeFree,GAD |
umls:C0007131 | Non-Small Cell Lung Carcinoma | 2 | BeFree |
umls:C0011303 | Demyelinating Diseases | 2 | BeFree |
umls:C0019163 | Hepatitis B | 2 | BeFree |
umls:C0021400 | Influenza | 2 | BeFree |
umls:C0036202 | Sarcoidosis | 2 | BeFree,GAD |
umls:C0279583 | T-cell childhood acute lymphoblastic leukemia | 2 | BeFree |
umls:C1272352 | Deficiency of vitamin D3 | 2 | BeFree |
umls:C1279481 | X-Linked Combined Immunodeficiency Diseases | 2 | BeFree |
umls:C3495559 | Juvenile arthritis | 2 | BeFree,GAD |
umls:C3714757 | Juvenile rheumatoid arthritis | 2 | BeFree |
umls:C0005684 | Malignant neoplasm of urinary bladder | 1 | GAD |
umls:C0006142 | Malignant neoplasm of breast | 1 | BeFree |
umls:C0007137 | Squamous cell carcinoma | 1 | BeFree |
umls:C0007193 | Cardiomyopathy, Dilated | 1 | BeFree |
umls:C0007621 | Neoplastic Cell Transformation | 1 | CTD_human |
umls:C0008031 | Chest Pain | 1 | BeFree |
umls:C0009324 | Ulcerative Colitis | 1 | CTD_human,GWASCAT |
umls:C0009402 | Colorectal Carcinoma | 1 | BeFree |
umls:C0011615 | Dermatitis, Atopic | 1 | GAD |
umls:C0013080 | Down Syndrome | 1 | BeFree |
umls:C0014072 | Experimental Autoimmune Encephalomyelitis | 1 | BeFree |
umls:C0014175 | Endometriosis | 1 | CTD_human |
umls:C0018133 | Graft-vs-Host Disease | 1 | BeFree |
umls:C0019196 | Hepatitis C | 1 | BeFree |
umls:C0020503 | Hyperparathyroidism, Secondary | 1 | GAD |
umls:C0020517 | Hypersensitivity | 1 | GAD |
umls:C0022504 | Kaposi Varicelliform Eruption | 1 | GAD |
umls:C0023467 | Leukemia, Myelocytic, Acute | 1 | BeFree |
umls:C0023787 | Lipodystrophy | 1 | BeFree |
umls:C0023892 | Biliary cirrhosis | 1 | CTD_human |
umls:C0024115 | Lung diseases | 1 | GAD |
umls:C0024117 | Chronic Obstructive Airway Disease | 1 | GAD |
umls:C0024266 | Lymphocytic Choriomeningitis | 1 | BeFree |
umls:C0024305 | Lymphoma, Non-Hodgkin | 1 | GAD |
umls:C0024307 | Lymphomatoid Granulomatosis | 1 | GAD |
umls:C0024530 | Malaria | 1 | BeFree |
umls:C0024535 | Malaria, Falciparum | 1 | BeFree |
umls:C0025007 | Measles | 1 | BeFree |
umls:C0026896 | Myasthenia Gravis | 1 | BeFree |
umls:C0027819 | Neuroblastoma | 1 | BeFree |
umls:C0028754 | Obesity | 1 | BeFree |
umls:C0029118 | Opportunistic Infections | 1 | BeFree |
umls:C0030354 | Papilloma | 1 | BeFree |
umls:C0035920 | Rubella | 1 | BeFree |
umls:C0038356 | Stomach Neoplasms | 1 | GAD |
umls:C0040336 | Tobacco Use Disorder | 1 | GAD |
umls:C0079487 | Helicobacter Infections | 1 | GAD |
umls:C0079744 | Diffuse Large B-Cell Lymphoma | 1 | GAD |
umls:C0085129 | Bronchial Hyperreactivity | 1 | GAD |
umls:C0085669 | Acute leukemia | 1 | BeFree |
umls:C0153014 | Non-arthropod borne lymphocytic choriomeningitis | 1 | BeFree |
umls:C0220615 | Adult Acute Myeloblastic Leukemia | 1 | BeFree |
umls:C0242596 | Neoplasm, Residual | 1 | BeFree |
umls:C0264220 | Chronic disease of respiratory system | 1 | BeFree |
umls:C0276199 | Canarypox (disorder) | 1 | BeFree |
umls:C0340288 | Stable angina | 1 | BeFree |
umls:C0376545 | Hematologic Neoplasms | 1 | BeFree |
umls:C0598766 | Leukemogenesis | 1 | BeFree |
umls:C0678222 | Breast Carcinoma | 1 | BeFree |
umls:C0700095 | Central neuroblastoma | 1 | BeFree |
umls:C0746104 | lung disease granulomatous | 1 | BeFree |
umls:C0751688 | Malignant Squamous Cell Neoplasm | 1 | BeFree |
umls:C0867389 | Chronic graft-versus-host disease | 1 | BeFree |
umls:C0948089 | Acute Coronary Syndrome | 1 | BeFree |
umls:C1142553 | Primary HIV infection | 1 | BeFree |
umls:C1280433 | Lipoatrophy | 1 | BeFree |
umls:C1292769 | Precursor B-cell lymphoblastic leukemia | 1 | BeFree |
umls:C1527249 | Colorectal Cancer | 1 | BeFree |
umls:C3809768 | IMMUNODEFICIENCY 13 | 1 | BeFree |
umls:C1833275 | Severe Combined Immunodeficiency, Autosomal Recessive, T Cell-Negative, B Cell-Positive, NK Cell-Negative | 0 | CTD_human |
umls:C1837028 | Severe Combined Immunodeficiency, Autosomal Recessive, T Cell Negative, B Cell Positive, NK Cell Positive | 0 | CLINVAR,CTD_human,ORPHANET |
umls:C2700553 | Omenn Syndrome | 0 | ORPHANET |