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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for MST1R
check button Gene summary
Basic gene informationGene symbolMST1R
Gene namemacrophage stimulating 1 receptor (c-met-related tyrosine kinase)
SynonymsCD136|CDw136|PTK8|RON
CytomapUCSC genome browser: 3p21.3
Type of geneprotein-coding
RefGenesNM_001244937.1,
NM_002447.2,
DescriptionMSP receptorMST1R variant RON30MST1R variant RON62PTK8 protein tyrosine kinase 8RON variant 21RON variant E2E3c-met-related tyrosine kinasemacrophage-stimulating protein receptorp185-Ronsoluble RON variant 1soluble RON variant 2soluble RON vari
Modification date20141222
dbXrefs MIM : 600168
HGNC : HGNC
Ensembl : ENSG00000164078
HPRD : 02545
Vega : OTTHUMG00000156709
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_MST1R
BioGPS: 4486
PathwayNCI Pathway Interaction Database: MST1R
KEGG: MST1R
REACTOME: MST1R
Pathway Commons: MST1R
ContextiHOP: MST1R
ligand binding site mutation search in PubMed: MST1R
UCL Cancer Institute: MST1R
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)ColonProstateStomach
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)COADPRADSTAD
Reference showing the relevant tissue of MST1R
Description by TissGene annotationsCancer gene
Fused withOncogene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0009615response to virus12676986
GO:0043406positive regulation of MAP kinase activity12676986
GO:0051897positive regulation of protein kinase B signaling12676986
GO:0009615response to virus12676986
GO:0043406positive regulation of MAP kinase activity12676986
GO:0051897positive regulation of protein kinase B signaling12676986


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TissGeneExp for MST1R

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KIRC-3.324199146-2.219781091-1.1044180562.11E-086.20E-08
THCA0.590416791-0.8894340571.4798508472.34E-121.95E-11
BRCA0.792390401-0.3593832841.1517736843.53E-101.32E-09
STAD3.2004626591.8130282841.3874343750.001410.006969429
KICH-3.098080091-1.722260091-1.375820.0008280.001812226
LUSC0.5017144981.533353713-1.0316392160.0007910.001486922


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TissGene-miRNA for MST1R

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for MST1R
TissGeneSNV for MST1R

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.R470CUCEC2
p.P664LUCEC1
p.R845QBRCA1
p.S1041FSKCM1
p.R696QKICH1
p.R728WSTAD1
p.N1107KSKCM1
p.F232YGBM1
p.R858CSTAD1
p.Q1106EHNSC1
p.R1331QSKCM1
p.G605VHNSC1
p.R142HUCEC1
p.L1146VCESC1
p.E341KSTAD1
p.I1113MBLCA1
p.A131VUCEC1
p.V1143MLUAD1
p.E62KLUAD1
p.S992FSKCM1
p.R1053WLGG1
p.P109SSKCM1
p.D1295NHNSC1
p.G952RLIHC1
p.R1136HLIHC1
p.P1365HOV1
p.S812RSARC1
p.R1289HUCEC1
p.D1295HBLCA1
p.C533SSARC1
p.R582TBLCA1
p.S623NESCA1
p.Q1343LLIHC1
p.R1212QSARC1
p.R470STHYM1
p.Q9*BLCA1
p.R631QTHYM1
p.T1082IESCA1
p.A1144DCOAD1
p.R1231CLUSC1
p.S867TESCA1
p.R504HTHYM1
p.P6LBLCA1
p.R1145HCOAD1
p.G1385VTHCA1
p.R308CLIHC1
p.R1108*PAAD1
p.P525SSKCM1
p.G110EBLCA1
p.Q926KSKCM1
p.R1118CHNSC1
p.D565VSTAD1
p.T103MUCEC1
p.T420ISKCM1
p.R1053WPAAD1
p.S1064COV1
p.E573KHNSC1
p.E1340*CESC1
p.D1027NBLCA1
p.T1261IBLCA1
p.R1331XTHYM1
p.V890MUCEC1
p.R142HTHYM1
p.S1315FBLCA1
p.C536RPAAD1
p.R500QSTAD1
p.G591CSTAD1
p.R617QUCEC1
p.G1118DSKCM1
p.G1336VTHCA1
p.M1371ICESC1
p.R832QCOAD1
p.R1342QCOAD1
p.G1050ACOAD1
p.V360MGBM1
p.S1056FSKCM1
p.S1047FSKCM1
p.P115SPAAD1
p.D1295GUCEC1
p.T187NUCEC1
p.R282QSKCM1
p.V498MSTAD1
p.H167PLUSC1
p.E1342QCESC1
p.G514RSTAD1
p.S48GLUAD1
p.G1167DSKCM1
p.S1381LHNSC1
p.H667NSARC1
p.R396QCESC1
p.L999MBLCA1
p.E639QLUSC1
p.V345IDLBC1
p.R504HLAML1
p.M551IPAAD1
p.S674FSKCM1
p.E876KBLCA1
p.P615SSKCM1
p.E1121*BLCA1
p.D1235ESTAD1
p.R535CSTAD1
p.S388FSKCM1
p.P863LSKCM1
p.T606ILGG1
p.V188MSTAD1
p.D379NBRCA1
p.A69DUCEC1
p.V977FOV1
p.P855SLUAD1
p.E1055KHNSC1
p.I74VBLCA1
p.D1292HHNSC1
p.E705QCESC1
p.P99LSKCM1
p.A69VCOAD1
p.L965FHNSC1
p.V655IPRAD1
p.A200GSTAD1
p.R1030WCOAD1
p.P160LLUAD1
p.E1046XESCA1
p.D951YBLCA1
p.P358RCESC1
p.V498MLIHC1
p.R1108XPAAD1
p.A889TBLCA1
p.G108SLUAD1
p.Q140*LUAD1
p.D372NCESC1
p.E811KCESC1


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TissGeneCNV for MST1R

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for MST1R

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNABF772180MST1R-SIPA1L3chr3:49924847chr19:38655221
Chimerdb3.0ChiTaRsNABE932152SET-MST1Rchr9:131454279chr3:49924891
TCGAfusionPortalPRADALUADTCGA-95-7039-01AMST1R-FNDC3BIn-frameChr3:49932600Chr3:171904502


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TissGeneNet for MST1R

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
MST1R, PPP1CC, PPP1CA, UBC, YWHAZ, PLXNB2, RELA, SRC, YWHAQ, JAK2, MST1, YWHAE, FURIN, YWHAB, PIK3R1, YWHAH, SFN, GNB1, PLXNB1, PLXNB3, EPOR (tumor)MST1R, PPP1CC, YWHAZ, PLCG1, GRB2, PLXNB2, SRC, SHC1, YWHAQ, MST1, YWHAB, PIK3R1, STUB1, AKT1, HSP90AA1, SFN, GAB1, PLXNB1, PLXNB3, EPOR, HYAL2 (normal)
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COAD (tumor)COAD (normal)
MST1R, PPP1CA, UBC, YWHAZ, PLCG1, PLXNB2, SRC, SHC1, YWHAQ, MST1, FURIN, YWHAB, YES1, PIK3R1, STUB1, AKT1, SFN, GAB1, PLXNB1, PLXNB3, EPOR (tumor)MST1R, PPP1CA, UBC, PLCG1, GRB2, PLXNB2, YWHAQ, JAK2, MST1, FURIN, YWHAB, YES1, PIK3R1, STUB1, AKT1, SFN, GNB1, GAB1, PLXNB1, EPOR, HYAL2 (normal)
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HNSC (tumor)HNSC (normal)
MST1R, PPP1CC, PPP1CA, YWHAZ, GRB2, PLXNB2, RELA, SRC, SHC1, YWHAQ, JAK2, CBL, FURIN, YWHAB, YES1, PIK3R1, STUB1, SFN, PLXNB1, EPOR, HYAL2 (tumor)MST1R, PPP1CC, PPP1CA, UBC, PLCG1, GRB2, PLXNB2, RELA, SRC, SHC1, JAK2, HSPA8, CBL, YWHAB, YES1, HSP90AA1, SFN, GNB1, PLXNB1, PLXNB3, HYAL2 (normal)
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KICH (tumor)KICH (normal)
MST1R, PPP1CA, PLCG1, PLXNB2, RELA, SRC, SHC1, JAK2, MST1, YWHAE, HSPA8, CBL, FURIN, STUB1, AKT1, YWHAH, SFN, GNB1, GAB1, PLXNB3, EPOR (tumor)MST1R, PPP1CC, PPP1CA, UBC, YWHAZ, GRB2, PLXNB2, RELA, SHC1, JAK2, YWHAE, HSPA8, CBL, FURIN, PIK3R1, AKT1, HSP90AA1, YWHAH, SFN, GNB1, HYAL2 (normal)
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KIRC (tumor)KIRC (normal)
MST1R, UBC, YWHAZ, GRB2, PLXNB2, RELA, SRC, SHC1, YWHAQ, MST1, HSPA8, FURIN, YWHAB, PIK3R1, AKT1, YWHAH, SFN, GNB1, PLXNB3, EPOR, HYAL2 (tumor)MST1R, PPP1CC, PLCG1, PLXNB2, RELA, SRC, YWHAQ, JAK2, MST1, YWHAE, HSPA8, CBL, FURIN, YES1, PIK3R1, AKT1, SFN, PLXNB1, PLXNB3, EPOR, HYAL2 (normal)
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KIRP (tumor)KIRP (normal)
MST1R, PPP1CC, YWHAZ, PLCG1, RELA, SRC, SHC1, YWHAQ, MST1, HSPA8, FURIN, YES1, PIK3R1, AKT1, HSP90AA1, YWHAH, SFN, PLXNB1, PLXNB3, EPOR, HYAL2 (tumor)MST1R, PPP1CC, YWHAZ, PLCG1, PLXNB2, RELA, SRC, MST1, YWHAE, HSPA8, CBL, FURIN, YWHAB, AKT1, HSP90AA1, SFN, GAB1, PLXNB1, PLXNB3, EPOR, HYAL2 (normal)
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LIHC (tumor)LIHC (normal)
MST1R, YWHAZ, PLCG1, PLXNB2, SRC, YWHAQ, JAK2, MST1, YWHAE, CBL, FURIN, YWHAB, AKT1, HSP90AA1, YWHAH, SFN, GNB1, GAB1, PLXNB1, PLXNB3, HYAL2 (tumor)MST1R, YWHAZ, PLXNB2, SRC, SHC1, YWHAQ, JAK2, MST1, CBL, FURIN, YWHAB, YES1, PIK3R1, AKT1, HSP90AA1, YWHAH, SFN, GNB1, GAB1, PLXNB3, EPOR (normal)
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LUAD (tumor)LUAD (normal)
MST1R, PPP1CC, PPP1CA, YWHAZ, PLCG1, PLXNB2, SRC, YWHAQ, MST1, YWHAE, HSPA8, CBL, FURIN, YWHAB, YES1, STUB1, GNB1, GAB1, PLXNB1, EPOR, HYAL2 (tumor)MST1R, PPP1CC, UBC, PLXNB2, RELA, SRC, YWHAQ, JAK2, MST1, YWHAE, YES1, STUB1, AKT1, HSP90AA1, YWHAH, SFN, GNB1, GAB1, PLXNB1, PLXNB3, HYAL2 (normal)
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LUSC (tumor)LUSC (normal)
MST1R, PPP1CC, PPP1CA, YWHAZ, GRB2, PLXNB2, SRC, YWHAQ, JAK2, MST1, YWHAE, HSPA8, CBL, FURIN, YWHAB, AKT1, HSP90AA1, GAB1, PLXNB1, PLXNB3, EPOR (tumor)MST1R, PPP1CC, PPP1CA, YWHAZ, PLXNB2, RELA, SRC, SHC1, YWHAQ, JAK2, MST1, YWHAE, FURIN, STUB1, HSP90AA1, SFN, GNB1, GAB1, PLXNB3, EPOR, HYAL2 (normal)
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PRAD (tumor)PRAD (normal)
MST1R, PPP1CC, PPP1CA, UBC, GRB2, PLXNB2, RELA, SRC, SHC1, YWHAQ, JAK2, MST1, YWHAE, HSPA8, FURIN, STUB1, YWHAH, SFN, GNB1, PLXNB1, PLXNB3 (tumor)MST1R, PPP1CC, PPP1CA, PLCG1, SRC, SHC1, YWHAQ, JAK2, MST1, YWHAE, HSPA8, CBL, PIK3R1, AKT1, HSP90AA1, YWHAH, SFN, GNB1, GAB1, PLXNB1, EPOR (normal)
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STAD (tumor)STAD (normal)
MST1R, PPP1CA, PLCG1, GRB2, PLXNB2, SRC, SHC1, YWHAQ, MST1, YWHAE, HSPA8, CBL, FURIN, YWHAB, PIK3R1, YWHAH, SFN, GNB1, GAB1, PLXNB1, PLXNB3 (tumor)MST1R, PPP1CA, YWHAZ, PLCG1, PLXNB2, RELA, SRC, YWHAQ, JAK2, HSPA8, CBL, YES1, PIK3R1, YWHAH, SFN, GNB1, GAB1, PLXNB1, PLXNB3, EPOR, HYAL2 (normal)
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THCA (tumor)THCA (normal)
MST1R, PPP1CC, UBC, PLCG1, RELA, YWHAQ, JAK2, MST1, YWHAE, HSPA8, CBL, FURIN, STUB1, AKT1, HSP90AA1, YWHAH, SFN, GAB1, PLXNB3, EPOR, HYAL2 (tumor)MST1R, PPP1CC, YWHAZ, PLXNB2, RELA, SRC, SHC1, YWHAQ, MST1, YWHAE, CBL, YWHAB, YES1, PIK3R1, HSP90AA1, YWHAH, SFN, GNB1, GAB1, PLXNB1, HYAL2 (normal)
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TissGeneProg for MST1R

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for MST1R
TissGeneDrug for MST1R

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for MST1R

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0007131Non-Small Cell Lung Carcinoma6BeFree
umls:C0178874Tumor Progression6BeFree
umls:C0009402Colorectal Carcinoma5BeFree
umls:C0006142Malignant neoplasm of breast4BeFree
umls:C0024623Malignant neoplasm of stomach4BeFree
umls:C0027627Neoplasm Metastasis4BeFree
umls:C0242379Malignant neoplasm of lung4BeFree
umls:C0596263Carcinogenesis4BeFree
umls:C0684249Carcinoma of lung4BeFree
umls:C0699791Stomach Carcinoma4BeFree
umls:C0001418Adenocarcinoma3BeFree,LHGDN
umls:C0235974Pancreatic carcinoma3BeFree
umls:C0346647Malignant neoplasm of pancreas3BeFree
umls:C0376358Malignant neoplasm of prostate3BeFree
umls:C0600139Prostate carcinoma3BeFree
umls:C0678222Breast Carcinoma3BeFree
umls:C1527249Colorectal Cancer3BeFree
umls:C2239176Liver carcinoma3BeFree
umls:C0001430Adenoma2BeFree,LHGDN
umls:C0007102Malignant tumor of colon2BeFree
umls:C0007134Renal Cell Carcinoma2BeFree,LHGDN
umls:C0009324Ulcerative Colitis2BeFree,LHGDN
umls:C0009375Colonic Neoplasms2BeFree,LHGDN
umls:C0010346Crohn Disease2BeFree,LHGDN
umls:C0024121Lung Neoplasms2BeFree
umls:C0024299Lymphoma2BeFree
umls:C0026769Multiple Sclerosis2BeFree,LHGDN
umls:C0029925Ovarian Carcinoma2BeFree
umls:C0033578Prostatic Neoplasms2BeFree
umls:C0699790Colon Carcinoma2BeFree
umls:C1261473Sarcoma2BeFree
umls:C1458155Mammary Neoplasms2BeFree,LHGDN
umls:C0005684Malignant neoplasm of urinary bladder1BeFree
umls:C0005695Bladder Neoplasm1BeFree
umls:C0006413Burkitt Lymphoma1BeFree
umls:C0007115Malignant neoplasm of thyroid1BeFree
umls:C0007137Squamous cell carcinoma1BeFree
umls:C0009404Colorectal Neoplasms1LHGDN
umls:C0011065Cessation of life1LHGDN
umls:C0014070Encephalomyelitis1LHGDN
umls:C0014072Experimental Autoimmune Encephalomyelitis1BeFree
umls:C0014175Endometriosis1BeFree,LHGDN
umls:C0014867Esophageal Varices1BeFree
umls:C0017638Glioma1BeFree
umls:C0019693HIV Infections1BeFree
umls:C0021390Inflammatory Bowel Diseases1GAD
umls:C0023418leukemia1BeFree
umls:C0027765nervous system disorder1BeFree
umls:C0029463Osteosarcoma1CTD_human
umls:C0030354Papilloma1BeFree
umls:C0032927Precancerous Conditions1BeFree
umls:C0036341Schizophrenia1GAD
umls:C0042769Virus Diseases1BeFree
umls:C0079744Diffuse Large B-Cell Lymphoma1BeFree
umls:C0149678Epstein-Barr Virus Infections1BeFree
umls:C0149925Small cell carcinoma of lung1BeFree
umls:C0206687Carcinoma, Endometrioid1BeFree
umls:C0206754Neuroendocrine Tumors1BeFree
umls:C0242488Acute Lung Injury1LHGDN
umls:C0346255Oncocytoma, renal1BeFree
umls:C0549473Thyroid carcinoma1BeFree
umls:C0566602Primary sclerosing cholangitis1BeFree
umls:C0686619Secondary malignant neoplasm of lymph node1BeFree
umls:C0699885Carcinoma of bladder1BeFree
umls:C0860207Drug-Induced Liver Injury1CTD_human
umls:C0877373Advanced cancer1BeFree
umls:C0919267ovarian neoplasm1LHGDN
umls:C0949541Hurthle Cell Tumor1BeFree
umls:C1112160Gastrooesophageal cancer1BeFree
umls:C1140680Malignant neoplasm of ovary1BeFree
umls:C1153706Endometrial adenocarcinoma1BeFree
umls:C1168401Squamous cell carcinoma of the head and neck1BeFree
umls:C1266042Chromophobe Renal Cell Carcinoma1BeFree
umls:C1301034Pancreatic intraepithelial neoplasia1BeFree
umls:C1333064Classical Hodgkin's Lymphoma1BeFree
umls:C1368683Epithelioma1BeFree
umls:C1512981Mammary Tumorigenesis1BeFree
umls:C1518171Malignant Conversion1BeFree
umls:C1569637Adenocarcinoma, Endometrioid1BeFree