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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for ACPP
check button Gene summary
Basic gene informationGene symbolACPP
Gene nameacid phosphatase, prostate
Synonyms5'-NT|ACP-3|ACP3
CytomapUCSC genome browser: 3q22.1
Type of geneprotein-coding
RefGenesNM_001099.4,
NM_001134194.1,NM_001292037.1,
Description5'-nucleotidaseTMPaseecto-5'-nucleotidaseprostatic acid phosphataseprostatic acid phosphotasethiamine monophosphatase
Modification date20141207
dbXrefs MIM : 171790
HGNC : HGNC
Ensembl : ENSG00000014257
HPRD : 01378
Vega : OTTHUMG00000159650
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_ACPP
BioGPS: 55
PathwayNCI Pathway Interaction Database: ACPP
KEGG: ACPP
REACTOME: ACPP
Pathway Commons: ACPP
ContextiHOP: ACPP
ligand binding site mutation search in PubMed: ACPP
UCL Cancer Institute: ACPP
Assigned class in TissGDB*A
Included tissue-specific gene expression resourcesHPA,TiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Prostate
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)PRAD
Reference showing the relevant tissue of ACPPAn efficient method for native protein purification in the selected range from prostate cancer tissue digests. Ahmad R, Nicora CD, Shukla AK, Smith RD, Qian WJ, Liu AY. Chin Clin Oncol. 2016 Dec;5(6):78. doi: 10.21037/cco.2016.12.03. (pmid:28061542)
go to article
Description by TissGene annotationsFused withOncogene
Fused withTSGene
Protective TissGene in OS
Protective TissGene in RFS
Cancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0046085adenosine metabolic process18940592
GO:0046085adenosine metabolic process18940592


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TissGeneExp for ACPP

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
HNSC0.9700620633.063799272-2.0937372097.81E-087.88E-07
KICH-0.6196448213.419703179-4.0393481.19E-097.33E-09
KIRC-2.5280228213.473270235-6.0012930561.33E-585.96E-56
KIRP-3.0074696963.574730304-6.58221.50E-241.87E-22


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TissGene-miRNA for ACPP

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for ACPP
TissGeneSNV for ACPP

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.E321KBLCA3
p.R43WBRCA2
p.T335MLIHC1
p.R405CLGG1
p.D211NUCEC1
p.M271TUCEC1
p.E237*BLCA1
p.E176KSKCM1
p.G192ESKCM1
p.P54SSKCM1
p.Y214XSKCM1
p.A227TSKCM1
p.T275SLGG1
p.S294GSTAD1
p.P309HTHYM1
p.R28LBRCA1
p.S348ILUAD1
p.G45RSKCM1
p.D301EESCA1
p.K193RLIHC1
p.E254QHNSC1
p.E338VLIHC1
p.Q77LLIHC1
p.H78YPRAD1
p.K87NBRCA1
p.E170QLUAD1
p.G305RBLCA1
p.K91NUCEC1
p.D151YBLCA1
p.E358DLUAD1
p.P54THNSC1
p.R28LLUAD1
p.R405PLIHC1
p.S174LBLCA1
p.Y214*SKCM1
p.R43WSKCM1
p.P162SLUAD1
p.P147SSKCM1
p.P126SSTAD1
p.G128DSKCM1
p.Y331CUCS1
p.C372FOV1
p.M397ISKCM1
p.G192XTHYM1
p.E229KBLCA1
p.L202FACC1
p.P125SSKCM1
p.P309HLUAD1
p.R405HUCEC1
p.S348RSARC1
p.G305RSKCM1
p.R28*SKCM1
p.L181PCOAD1
p.L26PCOAD1
p.R47QSKCM1
p.L307FSKCM1
p.A386TESCA1
p.E76DSTAD1
p.T385ILUAD1
p.Q276HBLCA1
p.V262FBRCA1
p.R105QSKCM1
p.Q297RESCA1
p.R105*LGG1
p.P57LSKCM1
p.I141VLGG1


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TissGeneCNV for ACPP

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for ACPP

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNABE768768ACPP-PAFAH1B1chr3:132077108chr17:2578664
Chimerdb3.0FusionScanPRADTCGA-WW-A8ZI-01AACPP-ZNF4625'UTR-5'UTRchr3:132036420chr9:109685634
Chimerdb3.0FusionScanPRADTCGA-G9-6366-01AACPP-MYCIn-Framechr3:132051188chr8:128750493
Chimerdb3.0FusionScanPRADTCGA-J4-A6G3-01AACPP-AXLIn-Framechr3:132075699chr19:41748787
Chimerdb3.0FusionScanPRADTCGA-HC-7233-01AACPP-SAFB2In-Framechr3:132036420chr19:5616346
Chimerdb3.0TopHat-FusionUCECTCGA-AX-A3FX-01AACPP-GK5In-Framechr3:132069181chr3:141889237
Chimerdb3.0TopHat-FusionPRADTCGA-HC-7077-01AACPP-TMPRSS2In-Framechr3:132050576chr21:42843693
Chimerdb3.0TopHat-FusionPRADTCGA-HC-7077-01AACPP-TMPRSS2In-Framechr3:132050814chr21:42843184
Chimerdb3.0TopHat-FusionPRADTCGA-V1-A9O9-01AACPP-ATP2C1In-Framechr3:132036419chr3:130649259
Chimerdb3.0TopHat-FusionPRADTCGA-V1-A9O9-01AATP2C1-ACPPIn-Framechr3:130675022chr3:132041470
Chimerdb3.0TopHat-FusionPRADTCGA-HC-7211-01AACPP-SKILIn-Framechr3:132036419chr3:170101818
Chimerdb3.0TopHat-FusionPRADTCGA-HC-7233-01AACPP-SAFB2In-Framechr3:132036419chr19:5616345
Chimerdb3.0TopHat-FusionPRADTCGA-G9-6366-01AACPP-CASC11Out-of-Framechr3:132051187chr8:128746200
TCGAfusionPortalPRADAPRADTCGA-EJ-7125-01ARPLP2-ACPP3UTR-5UTRChr11:812874Chr3:132036211
TCGAfusionPortalPRADAPRADTCGA-G9-6367-01APKM2-ACPP3UTR-5UTRChr15:72491370Chr3:132036250


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TissGeneNet for ACPP

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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COAD (tumor)COAD (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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HNSC (tumor)HNSC (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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KICH (tumor)KICH (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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KIRC (tumor)KIRC (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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KIRP (tumor)KIRP (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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LIHC (tumor)LIHC (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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LUAD (tumor)LUAD (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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LUSC (tumor)LUSC (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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PRAD (tumor)PRAD (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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STAD (tumor)STAD (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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THCA (tumor)THCA (normal)
ACPP, UBC, ONECUT1, ERBB2, SHBG (tumor)ACPP, UBC, ONECUT1, ERBB2, SHBG (normal)
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TissGeneProg for ACPP

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for ACPP
TissGeneDrug for ACPP

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status
DB06688Sipuleucel-TAntagonist|Inhibitory immune responseBiotechApproved


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TissGeneDisease for ACPP

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0600139Prostate carcinoma22BeFree
umls:C0376358Malignant neoplasm of prostate18BeFree,MGD
umls:C0019693HIV Infections4BeFree
umls:C0023434Chronic Lymphocytic Leukemia4BeFree
umls:C0023467Leukemia, Myelocytic, Acute4BeFree
umls:C0033578Prostatic Neoplasms4BeFree,LHGDN
umls:C0002878Anemia, Hemolytic3BeFree
umls:C0006142Malignant neoplasm of breast3BeFree
umls:C0010674Cystic Fibrosis3BeFree
umls:C0023418leukemia3BeFree
umls:C0027627Neoplasm Metastasis3BeFree
umls:C0033581prostatitis3BeFree,LHGDN
umls:C0034186Pyelonephritis3BeFree
umls:C0150055Chronic pain3BeFree
umls:C0343401MRSA - Methicillin resistant Staphylococcus aureus infection3BeFree
umls:C0678222Breast Carcinoma3BeFree
umls:C0001418Adenocarcinoma2BeFree
umls:C0024623Malignant neoplasm of stomach2BeFree
umls:C0034050Pulmonary Alveolar Proteinosis2BeFree
umls:C0206708Cervical Intraepithelial Neoplasia2BeFree
umls:C0221036Acrodermatitis enteropathica2BeFree
umls:C0520575Acute pyelonephritis2BeFree
umls:C1527249Colorectal Cancer2BeFree
umls:C0003864Arthritis1BeFree
umls:C0006144Breast Cyst1LHGDN
umls:C0006145Breast Diseases1LHGDN
umls:C0007102Malignant tumor of colon1BeFree
umls:C0007847Malignant tumor of cervix1BeFree
umls:C0011849Diabetes Mellitus1BeFree
umls:C0015230Exanthema1BeFree
umls:C0017551Gilbert Disease (disorder)1BeFree
umls:C0017636Glioblastoma1BeFree
umls:C0017638Glioma1BeFree
umls:C0018801Heart failure1BeFree
umls:C0018802Congestive heart failure1BeFree
umls:C0020538Hypertensive disease1BeFree
umls:C0026936Mycoplasma Infections1BeFree
umls:C0027796Neuralgia1BeFree
umls:C0028754Obesity1BeFree
umls:C0029925Ovarian Carcinoma1BeFree
umls:C0040336Tobacco Use Disorder1GAD
umls:C0042341Varicocele1BeFree
umls:C0085110Severe Combined Immunodeficiency1BeFree
umls:C0184567Acute onset pain1BeFree
umls:C0220697POLYDACTYLY, POSTAXIAL1BeFree
umls:C0302592Cervix carcinoma1BeFree
umls:C0334276Adenocarcinoma in Situ1BeFree
umls:C0334660Angioendotheliomatosis1BeFree
umls:C0343641Human papilloma virus infection1BeFree
umls:C0376545Hematologic Neoplasms1BeFree
umls:C0398686Primary immune deficiency disorder1BeFree
umls:C0520572Enzymopathy1BeFree
umls:C0598935Tumor Initiation1BeFree
umls:C0699790Colon Carcinoma1BeFree
umls:C0751214Hyperalgesia, Thermal1BeFree
umls:C0848332Spots on skin1BeFree
umls:C0855095Small Lymphocytic Lymphoma1BeFree
umls:C0920646Renal ischaemia1BeFree
umls:C1458155Mammary Neoplasms1LHGDN
umls:C2936719Mechanical Allodynia1BeFree
umls:C3495559Juvenile arthritis1CTD_human
umls:C3714542Lymphoma, Diffuse1BeFree