TissGeneSummary for KIAA1456 |
Gene summary |
Basic gene information | Gene symbol | KIAA1456 |
Gene name | KIAA1456 | |
Synonyms | C8orf79|TRM9L | |
Cytomap | UCSC genome browser: 8p22 | |
Type of gene | protein-coding | |
RefGenes | NM_001099677.1, NM_020844.2, | |
Description | putative methyltransferase KIAA1456 | |
Modification date | 20141207 | |
dbXrefs | MIM : 615666 | |
HGNC : HGNC | ||
Ensembl : ENSG00000250305 | ||
HPRD : 13862 | ||
Vega : OTTHUMG00000165477 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_KIAA1456 | |
BioGPS: 57604 | ||
Pathway | NCI Pathway Interaction Database: KIAA1456 | |
KEGG: KIAA1456 | ||
REACTOME: KIAA1456 | ||
Pathway Commons: KIAA1456 | ||
Context | iHOP: KIAA1456 | |
ligand binding site mutation search in PubMed: KIAA1456 | ||
UCL Cancer Institute: KIAA1456 | ||
Assigned class in TissGDB* | C | |
Included tissue-specific gene expression resources | TiGER,GTEx | |
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | PancreasThyroid gland | |
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | PAADTHCA | |
Reference showing the relevant tissue of KIAA1456 | ||
Description by TissGene annotations |
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO term | PubMed ID |
Top |
TissGeneExp for KIAA1456 |
Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
Top |
TissGene-miRNA for KIAA1456 |
Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
Top |
TissGeneMut for KIAA1456 |
TissGeneSNV for KIAA1456 |
nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
- nsSNVs sorted by frequency. |
AAchange | Cancer type | # samples |
p.R248C | SKCM | 2 |
p.R248H | STAD | 2 |
p.R122C | SKCM | 2 |
p.P160S | SKCM | 1 |
p.R248S | HNSC | 1 |
p.P370S | SKCM | 1 |
p.R410C | UCEC | 1 |
p.H150Q | UCEC | 1 |
p.P244S | SKCM | 1 |
p.E232K | ESCA | 1 |
p.G346V | LUAD | 1 |
p.D155E | UCEC | 1 |
p.G74W | LUAD | 1 |
p.A80T | COAD | 1 |
p.L76Q | SKCM | 1 |
p.E396K | UCEC | 1 |
p.R410H | LGG | 1 |
p.N388S | LIHC | 1 |
p.E322G | KIRC | 1 |
p.R36C | COAD | 1 |
p.N273S | LUAD | 1 |
p.E18D | COAD | 1 |
p.G244R | SKCM | 1 |
p.G118R | SKCM | 1 |
p.H150Y | STAD | 1 |
p.A6T | LGG | 1 |
p.L168H | LUAD | 1 |
p.V268I | LUSC | 1 |
p.S384Y | STAD | 1 |
p.T280I | COAD | 1 |
p.W323C | BLCA | 1 |
p.A49T | UCEC | 1 |
p.G54E | SKCM | 1 |
p.R177K | SKCM | 1 |
p.L403S | SARC | 1 |
p.L59F | UCEC | 1 |
p.K231N | THYM | 1 |
p.H211L | COAD | 1 |
p.D383N | LUAD | 1 |
p.E126X | READ | 1 |
p.E100D | HNSC | 1 |
p.R223K | UCS | 1 |
p.S230Y | LUAD | 1 |
p.S280R | LIHC | 1 |
p.A104V | SKCM | 1 |
p.G452R | KIRC | 1 |
p.A128T | ACC | 1 |
p.D71Y | CHOL | 1 |
Top |
TissGeneCNV for KIAA1456 |
Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
Top |
TissGeneFusions for KIAA1456 |
Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
Chimerdb3.0 | FusionScan | HNSC | TCGA-CV-7101-01A | TBL1XR1-KIAA1456 | 5'UTR-5'UTR | chr3:176914908 | chr8:12863710 |
Top |
TissGeneNet for KIAA1456 |
Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
Top |
TissGeneProg for KIAA1456 |
Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Top |
TissGeneClin for KIAA1456 |
TissGeneDrug for KIAA1456 |
Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
TissGeneDisease for KIAA1456 |
Disease information associated with TissGene (DisGeNet, 2016-06-01) |
Disease ID | Disease name | # pubmeds | Source |
umls:C0009402 | Colorectal Carcinoma | 1 | BeFree |
umls:C0009404 | Colorectal Neoplasms | 1 | BeFree |
umls:C1527249 | Colorectal Cancer | 1 | BeFree |