TissGDB
Tissglogo

Home

Download

 Statistics

 Landscape

Help

Contact

Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

bullet point

TissGeneSummary

bullet point

TissGeneExp

bullet point

TissGene-miRNA

bullet point

TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

bullet point

TissGeneNet

bullet point

TissGeneProg

bullet point

TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for SLC4A1
check button Gene summary
Basic gene informationGene symbolSLC4A1
Gene namesolute carrier family 4 (anion exchanger), member 1 (Diego blood group)
SynonymsAE1|BND3|CD233|DI|EMPB3|EPB3|FR|RTA1A|SW|WD|WD1|WR
CytomapUCSC genome browser: 17q21.31
Type of geneprotein-coding
RefGenesNM_000342.3,
DescriptionDiego blood groupFroese blood groupSwann blood groupWaldner blood groupWright blood groupanion exchange protein 1anion exchanger 1anion exchanger-1band 3 anion transport proteinerythrocyte membrane protein band 3erythroid anion exchange protein
Modification date20141207
dbXrefs MIM : 109270
HGNC : HGNC
Ensembl : ENSG00000004939
HPRD : 00175
Vega : OTTHUMG00000156843
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_SLC4A1
BioGPS: 6521
PathwayNCI Pathway Interaction Database: SLC4A1
KEGG: SLC4A1
REACTOME: SLC4A1
Pathway Commons: SLC4A1
ContextiHOP: SLC4A1
ligand binding site mutation search in PubMed: SLC4A1
UCL Cancer Institute: SLC4A1
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesHPA,TiGER
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Bone marrowLiver
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)LAMLLIHC
Reference showing the relevant tissue of SLC4A1
Description by TissGene annotationsCancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0006820anion transport14734552
GO:0015701bicarbonate transport24121512
GO:0006820anion transport14734552
GO:0015701bicarbonate transport24121512


Top
TissGeneExp for SLC4A1

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KIRP-0.7346778888.960197112-9.6948758.77E-248.66E-22
COAD-3.010374522-1.807039907-1.2033346151.74E-057.53E-05
KIRC0.2598241968.83758114-8.5777569449.76E-403.84E-38
LUSC-2.2817326670.365973215-2.6477058823.82E-183.57E-17
LUAD-1.8127367240.249475345-2.0622120693.56E-112.27E-10
THCA-2.177749816-1.113890494-1.0638593223.08E-091.65E-08
LIHC-2.027547138-0.792969138-1.2345780.0002640.000823517


Top
TissGene-miRNA for SLC4A1

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


Top
TissGeneMut for SLC4A1
TissGeneSNV for SLC4A1

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
bullet point


check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.E68KSKCM2
p.G565DSKCM2
p.E20KSKCM2
p.L765MSKCM1
p.Q348ELUAD1
p.A716DBRCA1
p.R808CDLBC1
p.R808PLUSC1
p.L308MREAD1
p.T798MLUSC1
p.R387WUCEC1
p.R344*UCEC1
p.R388HSTAD1
p.S594RLUAD1
p.E897*SARC1
p.G172VLUSC1
p.Q754HLUSC1
p.E13XCOAD1
p.V850ASTAD1
p.L16MLUAD1
p.E472KHNSC1
p.E906KSKCM1
p.R879KSKCM1
p.T746SLUAD1
p.Q752*LUAD1
p.F476CSKCM1
p.N556SSKCM1
p.E306KSKCM1
p.L772MLUAD1
p.G565SSKCM1
p.K219RDLBC1
p.A735VSKCM1
p.D399NSKCM1
p.R304PHNSC1
p.G720ESKCM1
p.H51QSTAD1
p.R80HKIRC1
p.D905EDLBC1
p.A284VSKCM1
p.R150QGBM1
p.R387QGBM1
p.R432WPRAD1
p.R514HCOAD1
p.A855VSTAD1
p.Q5RUCEC1
p.E899DSKCM1
p.G313VUVM1
p.E63DLGG1
p.E257KSKCM1
p.P910LUCEC1
p.A400SLIHC1
p.E90KSKCM1
p.P368TLUAD1
p.A735VCOAD1
p.S574FSKCM1
p.R346CCOAD1
p.V488MSTAD1
p.A79VSTAD1
p.E2KSKCM1
p.R80HSTAD1
p.G380RCOAD1
p.G494SLGG1
p.T422NBLCA1
p.R827_spliceUCEC1
p.E90DCOAD1
p.S212LLUAD1
p.T422NLGG1
p.R387WSTAD1
p.A407SOV1
p.E508KLUAD1
p.R80CREAD1
p.R344XREAD1
p.G270EBLCA1
p.V825IPRAD1
p.R782HLUAD1
p.R901QUCEC1
p.R827QUCEC1
p.E480KHNSC1
p.R346CSTAD1
p.A579VCOAD1
p.T179PLUAD1
p.V729MBRCA1
p.G313DSKCM1
p.R694HSTAD1
p.L382MLGG1
p.A908TSKCM1
p.P692AGBM1
p.A767TGBM1
p.Y347FLIHC1
p.E32DCOAD1
p.R389CCOAD1
p.N880IUCEC1
p.E535DLUAD1
p.G270ESKCM1
p.G701DSTAD1
p.G89VLUAD1
p.A78VSTAD1
p.E109KSKCM1
p.L573ICOAD1
p.G599DTHYM1
p.P52TTHYM1
p.M586ISKCM1
p.T728ISKCM1
p.P184SSKCM1
p.R808SLUAD1
p.Q239KLUAD1
p.R180CLUAD1
p.R432WKIRP1
p.E151*LUAD1
p.M587IUCEC1
p.Y393NSKCM1
p.T798MKIRC1
p.E14DSKCM1
p.L136ISARC1
p.L120FSKCM1
p.A286SCESC1
p.G182RREAD1
p.F895ILIHC1
p.E777DLUAD1
p.R384CESCA1
p.Q804*LUAD1
p.S781FLIHC1
p.V256LLUAD1
p.D905NSKCM1
p.R808HLUSC1
p.R782LLUSC1
p.R150PCESC1
p.S856FSKCM1
p.L121PBLCA1
p.F411SBRCA1


Top
TissGeneCNV for SLC4A1

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


Top
TissGeneFusions for SLC4A1

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNAAJ709327SLC4A1-TCF7L1chr17:42325911chr2:85362506


Top
TissGeneNet for SLC4A1

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
COAD (tumor)COAD (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
HNSC (tumor)HNSC (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
KICH (tumor)KICH (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
KIRC (tumor)KIRC (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
KIRP (tumor)KIRP (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
LIHC (tumor)LIHC (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
LUAD (tumor)LUAD (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
LUSC (tumor)LUSC (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
PRAD (tumor)PRAD (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
STAD (tumor)STAD (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point
THCA (tumor)THCA (normal)
SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (tumor)SLC4A1, SYK, CDKN2A, PTPN1, PTPN11, LYN, ACTC1, EPB41, CANX, SLC4A1AP, ANK1, RHAG, CA2, CA4, EPB42, AP3B1 (normal)
bullet pointbullet point


Top
TissGeneProg for SLC4A1

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

Top
TissGeneClin for SLC4A1
TissGeneDrug for SLC4A1

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


Top
TissGeneDisease for SLC4A1

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C1704380Distal Renal Tubular Acidosis43BeFree,UNIPROT
umls:C0037889Hereditary spherocytosis16BeFree,CTD_human,LHGDN,ORPHANET
umls:C2675212Spherocytosis, Type 415CLINVAR,CTD_human,MGD,UNIPROT
umls:C2674218SPHEROCYTOSIS, TYPE 1 (disorder)13BeFree
umls:C0001126Renal tubular acidosis12BeFree,CTD_human,LHGDN
umls:C0019202Hepatolenticular Degeneration10BeFree
umls:C0013902Elliptocytosis, Hereditary8BeFree,CTD_human,GAD
umls:C0002878Anemia, Hemolytic6BeFree,CTD_human,LHGDN
umls:C0024530Malaria5BeFree,CTD_human,LHGDN
umls:C0002871Anemia3BeFree
umls:C0024623Malignant neoplasm of stomach3BeFree
umls:C0699791Stomach Carcinoma3BeFree
umls:C1262483Hereditary stomatocytosis3BeFree
umls:C0002881Anemia, Hemolytic, Congenital2BeFree
umls:C0039730Thalassemia2BeFree
umls:C0272048stomatocytic anemia2BeFree
umls:C0596263Carcinogenesis2BeFree
umls:C1861453Pseudohyperkalemia Cardiff2BeFree,CLINVAR,ORPHANET
umls:C1864498RENAL TUBULAR ACIDOSIS, DISTAL, AUTOSOMAL RECESSIVE2BeFree,CTD_human,MGD
umls:C1969038RENAL TUBULAR ACIDOSIS, DISTAL, WITH HEMOLYTIC ANEMIA (disorder)2CLINVAR,CTD_human,ORPHANET,UNIPROT
umls:C0001418Adenocarcinoma1LHGDN
umls:C0003130Anoxia1LHGDN
umls:C0005283beta Thalassemia1LHGDN
umls:C0015544Failure to Thrive1BeFree,LHGDN
umls:C0018609Hartnup Disease1BeFree
umls:C0018939Hematological Disease1CTD_human
umls:C0019045Hemoglobinopathies1BeFree,LHGDN
umls:C0020503Hyperparathyroidism, Secondary1GAD
umls:C0020538Hypertensive disease1BeFree
umls:C0022661Kidney Failure, Chronic1LHGDN
umls:C0024534Malaria, Cerebral1BeFree
umls:C0027654Embryonal Neoplasm1BeFree
umls:C0027709Nephrocalcinosis1BeFree,LHGDN
umls:C0028754Obesity1GWASCAT
umls:C0029454Osteopetrosis1BeFree
umls:C0033117Priapism1BeFree,GAD
umls:C0033626Protein Deficiency1BeFree
umls:C0035078Kidney Failure1BeFree
umls:C0042875Vitamin E Deficiency1RGD
umls:C0162316Iron deficiency anemia1RGD
umls:C0162809Kallmann Syndrome1BeFree
umls:C0268435Renal Tubular Acidosis, Type II1BeFree
umls:C0553720Spherocytosis1GAD
umls:C0687120Nephronophthisis1BeFree
umls:C1306589Congenital dyserythropoietic anemia, type II1BeFree
umls:C1561643Chronic Kidney Diseases1BeFree
umls:C1565489Renal Insufficiency1BeFree
umls:C3714514Infection1LHGDN
umls:C0221409Anemia, hereditary spherocytic hemolytic0ORPHANET
umls:C1832168BLOOD GROUP--FROESE0CLINVAR
umls:C1833690Ovalocytosis, Hereditary Hemolytic0ORPHANET
umls:C1862190BLOOD GROUP--WRIGHT ANTIGEN0CLINVAR
umls:C1862191BLOOD GROUP--WALDNER TYPE0CLINVAR
umls:C1862326HE, STOMATOCYTIC0CLINVAR
umls:C1969039Renal Tubular Acidosis, Distal, With Normal Red Cell Morphology0CLINVAR
umls:C1969379MALARIA, CEREBRAL, RESISTANCE TO0CLINVAR