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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for BRCA2
check button Gene summary
Basic gene informationGene symbolBRCA2
Gene namebreast cancer 2, early onset
SynonymsBRCC2|BROVCA2|FACD|FAD|FAD1|FANCD|FANCD1|GLM3|PNCA2|XRCC11
CytomapUCSC genome browser: 13q12.3
Type of geneprotein-coding
RefGenesNM_000059.3,
DescriptionBRCA1/BRCA2-containing complex, subunit 2Fanconi anemia group D1 proteinbreast and ovarian cancer susceptibility gene, early onsetbreast cancer 2 tumor suppressorbreast cancer type 2 susceptibility protein
Modification date20141222
dbXrefs MIM : 600185
HGNC : HGNC
Ensembl : ENSG00000139618
HPRD : 02554
Vega : OTTHUMG00000017411
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_BRCA2
BioGPS: 675
PathwayNCI Pathway Interaction Database: BRCA2
KEGG: BRCA2
REACTOME: BRCA2
Pathway Commons: BRCA2
ContextiHOP: BRCA2
ligand binding site mutation search in PubMed: BRCA2
UCL Cancer Institute: BRCA2
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Testis
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)TGCT
Reference showing the relevant tissue of BRCA2
Description by TissGene annotationsCancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0000724double-strand break repair via homologous recombination20729832
GO:0000910cytokinesis17286961
GO:0033600negative regulation of mammary gland epithelial cell proliferation15930293
GO:0043966histone H3 acetylation9619837
GO:0043967histone H4 acetylation9619837
GO:0045893positive regulation of transcription, DNA-templated9126734
GO:0000724double-strand break repair via homologous recombination20729832
GO:0000910cytokinesis17286961
GO:0033600negative regulation of mammary gland epithelial cell proliferation15930293
GO:0043966histone H3 acetylation9619837
GO:0043967histone H4 acetylation9619837
GO:0045893positive regulation of transcription, DNA-templated9126734


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TissGeneExp for BRCA2

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KIRP-0.774721924-2.3845000491.6097781259.85E-097.53E-08
LUSC1.437698113-0.1697312991.6074294126.03E-174.76E-16
BLCA1.377437122-0.9093891942.2868263161.18E-063.70E-05
STAD1.999728076-0.0659406742.065668757.35E-093.67E-07
BRCA1.328230981-0.2615953341.5898263163.65E-233.24E-22
COAD1.75159947-0.1478120681.8994115388.56E-142.98E-12
KIRC0.197788145-1.7266771331.9244652789.21E-291.56E-27
HNSC1.5960500960.1248384681.4712116281.07E-071.04E-06
ESCA2.9753687010.2922505192.6831181822.77E-060.000684498
LIHC-0.936929299-2.0238152991.0868860.0001660.000544588


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TissGene-miRNA for BRCA2

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for BRCA2
TissGeneSNV for BRCA2

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.R2842CUCEC2
p.R2888HUCEC2
p.H334YSKCM2
p.E2020KUCEC2
p.N1642TPAAD1
p.L2155HREAD1
p.D189HKIRC1
p.S3375GSTAD1
p.F1192CUCEC1
p.S1685LLUAD1
p.T2542MUCEC1
p.E2650QBRCA1
p.E1245GLIHC1
p.E2343QBLCA1
p.E2903KHNSC1
p.R2336CTHYM1
p.S1259RESCA1
p.E1158QBRCA1
p.D1911NBLCA1
p.L482IUCEC1
p.Q2731*BLCA1
p.E49XREAD1
p.S1597YREAD1
p.R2336CBRCA1
p.G500VHNSC1
p.E1646QLUAD1
p.S445YCOAD1
p.D1352YCOAD1
p.Q609HBLCA1
p.L1598FSKCM1
p.Q3262PSTAD1
p.M124VESCA1
p.P2352SSTAD1
p.L139VCOAD1
p.A1996GLIHC1
p.I2149VLUAD1
p.S3332YUCEC1
p.G1529RUCEC1
p.Q2655*BLCA1
p.L2926*BRCA1
p.Y1569CUCEC1
p.R1512CUCEC1
p.R1570IESCA1
p.C711*OV1
p.N2781DUCEC1
p.K3015*LUAD1
p.E97XCOAD1
p.E2635GCOAD1
p.N556SKIRP1
p.R2488TUCEC1
p.A3297TKIRC1
p.P1702LSKCM1
p.Q3299RHNSC1
p.S3218FHNSC1
p.T2097MBLCA1
p.E826*BLCA1
p.Q2870*BLCA1
p.A2698TGBM1
p.W993CLUSC1
p.Q2159*CESC1
p.K2316QUCEC1
p.V1605DHNSC1
p.I3418SSTAD1
p.G1761VUCEC1
p.I580LKIRP1
p.K3313TKIRP1
p.R2861THNSC1
p.S3123GHNSC1
p.A1981SUCEC1
p.L759IUCEC1
p.S1961TLUAD1
p.N1747SUCEC1
p.Q3247HUCEC1
p.S2887TKIRC1
p.Q2539HSTAD1
p.S2887LLIHC1
p.K604*UCEC1
p.D1386YBLCA1
p.A1439TSTAD1
p.T868IBLCA1
p.T2880IUCEC1
p.S1882*BLCA1
p.Q3026*SKCM1
p.S708YBLCA1
p.K1264RKIRP1
p.D1386NHNSC1
p.A1725SUCEC1
p.S1882*UCEC1
p.S2695LSKCM1
p.E732QBLCA1
p.C1265YLGG1
p.S278NPAAD1
p.S1172LSTAD1
p.I332FSTAD1
p.T1354MOV1
p.M1090LUCS1
p.E510XCOAD1
p.C1399RLUAD1
p.A2738STHCA1
p.Y2884*HNSC1
p.E832KBLCA1
p.E1382DUCEC1
p.V2820ILUSC1
p.H2074DLIHC1
p.V494ASTAD1
p.C1159SSTAD1
p.F3298CLIHC1
p.E2258KBLCA1
p.V3290FSARC1
p.E1046KBLCA1
p.E897*UCEC1
p.E3403QLUAD1
p.T1087ISKCM1
p.K2741NUCEC1
p.V348ASTAD1
p.K3238NESCA1
p.Y3308*BRCA1
p.S1064*UCEC1
p.H1752YSKCM1
p.I1017FPAAD1
p.G1771CLUAD1
p.R316KSKCM1
p.A1393VSTAD1
p.E2599XCOAD1
p.S2216FUCEC1
p.E2903DTHYM1
p.P2827LSKCM1
p.E2391KLUAD1
p.S2378AREAD1
p.C3304SBRCA1
p.G1338DSTAD1
p.E1493XCOAD1
p.G1963VTHYM1
p.R2268IUCEC1
p.S313YKIRC1
p.P606SSKCM1
p.I1772SUCEC1
p.E1726KBLCA1
p.K2570*UCEC1
p.Q1562*SKCM1
p.R2494QUCEC1
p.P740SSKCM1
p.H3117NLUAD1
p.L3180FUCS1
p.Y1749HLUAD1
p.E3393QHNSC1
p.K1139NUCEC1
p.T1915MCOAD1
p.E1571KHNSC1
p.R3052QUCEC1
p.A2711TUCEC1
p.S2695LLIHC1
p.E187*LUSC1
p.S3376*LUAD1
p.S3231XREAD1
p.S3239YUCEC1
p.T868IUCEC1
p.H1332DBLCA1
p.K3315NHNSC1
p.E1876KSKCM1
p.P288SUCEC1
p.D1096NREAD1
p.G2063RLUAD1
p.V1810ISTAD1
p.I2718VLUAD1
p.S1743RCOAD1
p.E1895KBLCA1
p.F2568CCOAD1
p.D1096EREAD1
p.I2105VHNSC1
p.I1607SUCEC1
p.E3342KSTAD1
p.D878NCOAD1
p.Q619*SKCM1
p.R3052WCOAD1
p.Q2157*BLCA1
p.D913EESCA1
p.S196IUCEC1
p.E2275DPRAD1
p.C279YLGG1
p.P606LSKCM1
p.F892LLIHC1
p.Q2870*SKCM1
p.L3180RREAD1
p.S1172LUCEC1
p.I2105LLUAD1
p.R2034HLUSC1
p.K1541ELUAD1
p.N372HCOAD1
p.S1341*BLCA1
p.E1514QCHOL1
p.S3252FSKCM1
p.R2336CUCEC1
p.N1619DSTAD1
p.R18HLIHC1
p.Q3398HSKCM1
p.E1120*LUAD1
p.A843VUCEC1
p.D281HPRAD1
p.K1536EKIRP1
p.R2502HSTAD1
p.C2473RUCEC1
p.V1663ICHOL1
p.A2951VSTAD1
p.R2494QREAD1
p.P3067SLUAD1
p.E2953ACOAD1
p.C1159YUCEC1
p.N1935DSTAD1
p.P2800RKIRC1
p.R2625*HNSC1
p.R2991CCOAD1
p.F1273LCESC1
p.P3324LSKCM1
p.V1078IUCEC1
p.R2418IUCEC1
p.H2932YTHCA1
p.C3097RPCPG1
p.D3260HBLCA1
p.E764KLUAD1
p.S1468FUCEC1
p.V290ILUAD1
p.S206CESCA1
p.F2349CREAD1
p.N2706SCESC1
p.S2067FSKCM1
p.I1136MBLCA1
p.S76*BLCA1
p.V2079MPAAD1
p.D1355YBRCA1
p.E532KLGG1
p.I1047MREAD1
p.E3405QBLCA1
p.W2970*LGG1
p.T1346NPAAD1
p.F2841IKIRC1
p.N2452TSTAD1
p.C554FLUAD1
p.V1306FLUAD1
p.K1649ELUAD1
p.T3401MREAD1
p.K2206NUCEC1
p.I2177VKIRC1
p.D427GBLCA1
p.N978SLUAD1
p.G2529DSKCM1
p.G2529SSKCM1
p.M2262TLUAD1
p.N1435TPRAD1
p.S205RCOAD1
p.Y2660CLUSC1
p.S1961GCOAD1
p.P555LSKCM1
p.N633KSARC1
p.K1638EOV1
p.E832KKIRC1
p.F312CHNSC1
p.C2422*UCEC1
p.L613RCOAD1
p.G2755ABLCA1
p.T1785IUCEC1
p.A2711TESCA1
p.S2201FLUSC1
p.P493LSKCM1
p.S2670LREAD1
p.T1067AUCEC1
p.F851LUCEC1
p.E294XESCA1
p.E2129*BLCA1
p.H1752NGBM1
p.S3231LHNSC1
p.E3342KHNSC1
p.E3177QBRCA1
p.D1547ESKCM1
p.N1435HCOAD1
p.G1963WCHOL1
p.V1804ISARC1
p.S3014LBLCA1
p.E1441*UCEC1
p.E626KSKCM1
p.L901ICOAD1
p.R468ISTAD1
p.G2584CUCEC1
p.S158PCOAD1
p.S3241CLUAD1
p.E1812GLGG1
p.Q499*LUSC1
p.Q2943EBLCA1
p.R1570TBLCA1
p.L2654FBLCA1
p.L1908VBLCA1
p.V2545ISTAD1
p.R155IUCEC1
p.Y2726CLIHC1
p.H223YSKCM1
p.E2906*OV1
p.R858TBLCA1
p.M192TBLCA1
p.H1332YLIHC1
p.Q3047HSTAD1
p.S1680YUCEC1
p.K2316RLUSC1
p.A766TCOAD1
p.K3313QSTAD1
p.S1115FSTAD1
p.D526NBLCA1
p.H1350NUCEC1
p.Q649HBLCA1
p.F1092LSKCM1
p.Q1089EBLCA1
p.S2695XSTAD1
p.E2081QBLCA1
p.D224VGBM1
p.S1121TSTAD1
p.R2273KBLCA1
p.L35FSKCM1
p.N852KSTAD1
p.K2111ELIHC1
p.D2218YREAD1
p.P2107SSKCM1
p.R1512HLUAD1
p.A2351TSTAD1
p.E2175QHNSC1
p.E897KBLCA1
p.L2917FSKCM1
p.A1393VLGG1
p.L2753FBLCA1
p.E816GKIRP1
p.K1191NBRCA1
p.R1190WCESC1
p.S2243CLUAD1
p.E2476*UCEC1
p.Q3398RUCS1
p.D988NUCEC1
p.E510*UCEC1
p.S2053PLGG1
p.N1878KDLBC1
p.E3043ABLCA1
p.N517SLGG1
p.S1597YUCEC1
p.V2503FLUAD1
p.S3396RUCEC1
p.V1542ASTAD1
p.P2734HSTAD1
p.S3231*CESC1
p.D1420NUCEC1
p.P606LHNSC1
p.M3118VTHYM1
p.Y232CCOAD1
p.V2190IPRAD1
p.S2243YREAD1
p.K1264ESKCM1
p.S2098TLUSC1
p.E1318KBLCA1
p.V3091IDLBC1
p.L833RLUAD1
p.S1882*OV1
p.T3401MPCPG1
p.F439CSTAD1
p.N1910SOV1
p.E826*CESC1
p.E1036KLUSC1
p.P3063SESCA1
p.K722QREAD1
p.Y2624NLIHC1
p.D381GBLCA1
p.Q2354EBLCA1
p.P143SUCEC1
p.Y3049SBRCA1
p.N1805DUCS1
p.D125GKIRC1
p.E1126KBLCA1
p.S2695*LUAD1
p.S2307LSKCM1
p.P2187LSKCM1
p.L1091FLGG1
p.S641YCOAD1
p.D281YCOAD1
p.E294*ESCA1
p.H1966RGBM1
p.P2608SLUAD1
p.A577SLUAD1
p.V1486ILGG1
p.Q2749*HNSC1
p.S1792FSKCM1
p.R2520QCOAD1
p.S44CLUAD1
p.P3054SESCA1
p.E1518QBLCA1
p.I2822TLUSC1
p.E1879DREAD1
p.S2022LSTAD1
p.E2004XESCA1
p.S2695*STAD1
p.T1887MUCEC1
p.D1469YKIRP1
p.S2704FSKCM1
p.E456DREAD1
p.L2838FUVM1
p.E1126QBLCA1


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TissGeneCNV for BRCA2

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for BRCA2

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP


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TissGeneNet for BRCA2

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
BRCA2, BRCA1, UBC, BRCC3, ATR, BUB1B, CCNA2, MCPH1, SHFM1, ATM, SIRT2, ELF1, BARD1, PMS1, FANCD2, PALB2, RAD23A, RBBP8, C11orf30, KIF4A, BACH1 (tumor)BRCA2, SIRT3, PLK1, RAD51, CDK1, CDK2, BRCC3, MGMT, SKP2, ATR, BUB1B, USF2, CCNA2, ATM, BARD1, FANCD2, PALB2, C11orf30, KIF4A, BACH1, HMG20B (normal)
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COAD (tumor)COAD (normal)
BRCA2, BRCA1, PLK1, RAD51, CDK1, CDK2, CCNE1, BRCC3, SKP2, ATR, CHEK2, BUB1B, CCNA2, SIRT2, MTA2, AURKB, FANCG, H2AFX, FANCD2, KIF4A, XRCC3 (tumor)BRCA2, BRCA1, PLK1, RAD51, CDK1, CDK2, BRCC3, SKP2, ATR, CHEK2, BUB1B, USF1, CCNA2, ELF1, AURKB, BARD1, PMS1, FANCD2, PALB2, KIF4A, UQCC (normal)
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HNSC (tumor)HNSC (normal)
BRCA2, TP53, BRCA1, SP1, SIRT3, PLK1, CDK1, CDK2, BRCC3, MGMT, SKP2, ATR, BUB1B, USF2, CCNA2, ELF1, BARD1, PALB2, C11orf30, KIF4A, BACH1 (tumor)BRCA2, BRCA1, SP1, SIRT3, CDK2, BRCC3, SKP2, ABL1, ATR, SIRT1, BUB1B, CCNA2, SHFM1, ATM, ELF1, BARD1, FANCD2, PALB2, RBBP8, C11orf30, KIF4A (normal)
bullet pointbullet point
KICH (tumor)KICH (normal)
BRCA2, BRCA1, PLK1, RAD51, SMAD2, CCNE1, TCF4, ATR, CHEK2, BUB1B, CCNA2, MCPH1, ATM, ELF1, AURKB, BARD1, FANCG, FANCD2, FANCE, KIF4A, XRCC3 (tumor)BRCA2, BRCA1, PLK1, RAD51, CDK1, CDK2, SKP2, BUB1B, USF2, CCNA2, RPA1, ATM, SIRT2, AURKB, BARD1, PMS1, FANCD2, DMC1, C11orf30, KIF4A, HMG20B (normal)
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KIRC (tumor)KIRC (normal)
BRCA2, BRCA1, PLK1, RAD51, CDK1, CDK2, CCNE1, TCF4, SKP2, ATR, CHEK2, BUB1B, CCNA2, ATM, ELF1, AURKB, BARD1, PMS1, FANCD2, KIF4A, UQCC (tumor)BRCA2, BRCA1, SP1, SIRT3, RAD51, CDK2, MGMT, SKP2, SIRT1, BUB1B, SHFM1, ATM, ELF1, BARD1, FANCD2, PALB2, RAD23A, C11orf30, KIF4A, BACH1, HMG20B (normal)
bullet pointbullet point
KIRP (tumor)KIRP (normal)
BRCA2, TP53, BRCA1, SP1, PLK1, TCF4, SKP2, ATR, CHEK2, BUB1B, CCNA2, RPA1, ATM, ELF1, AURKB, BARD1, SERPINH1, FANCD2, RAD23A, KIF4A, UQCC (tumor)BRCA2, BRCA1, SIRT3, RAD51, CDK1, CDK2, BRCC3, MGMT, SKP2, ATR, SIRT1, BUB1B, ATM, ELF1, BARD1, FANCD2, PALB2, C11orf30, KIF4A, BACH1, HMG20B (normal)
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LIHC (tumor)LIHC (normal)
BRCA2, BRCA1, PLK1, CDK1, BRCC3, SKP2, ATR, BUB1B, USF2, CCNA2, MCPH1, ATM, AURKB, BARD1, FANCG, PMS1, FANCD2, PALB2, RAD23A, C11orf30, KIF4A (tumor)BRCA2, BRCA1, SP1, SIRT3, CDK1, CDK2, MGMT, SKP2, ABL1, ATR, BUB1B, CCNA2, SHFM1, ATM, ELF1, BARD1, FANCD2, PALB2, RBBP8, C11orf30, KIF4A (normal)
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LUAD (tumor)LUAD (normal)
BRCA2, GRB2, PLK1, CDK1, CCNE1, BRCC3, ATR, CHEK2, BUB1B, CCNA2, ATM, SIRT2, AURKB, BARD1, RPA2, PMS1, FANCD2, RAD23A, KIF4A, MORF4L1, HMG20B (tumor)BRCA2, BRCA1, SIRT3, PLK1, RAD51, CDK1, CDK2, CCNE1, SKP2, ATR, CHEK2, BUB1B, CCNA2, AURKB, BARD1, FANCG, FANCD2, PALB2, DMC1, C11orf30, KIF4A (normal)
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LUSC (tumor)LUSC (normal)
BRCA2, BRCA1, PLK1, RAD51, CDK1, CCNE1, BRCC3, SKP2, ATR, CHEK2, BUB1B, CCNA2, ATM, AURKB, BARD1, FANCG, PMS1, FANCD2, RAD23A, C11orf30, KIF4A (tumor)BRCA2, BRCA1, SP1, PLK1, RAD51, CDK1, CDK2, SKP2, ATR, CHEK2, BUB1B, CCNA2, RPA1, ATM, AURKB, BARD1, FANCG, PMS1, FANCD2, C11orf30, KIF4A (normal)
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PRAD (tumor)PRAD (normal)
BRCA2, BRCA1, SP1, SIRT3, RAD51, MGMT, SKP2, ATR, BUB1B, USF1, USF2, CCNA2, SHFM1, ELF1, BARD1, FANCD2, RAD23A, C11orf30, KIF4A, BACH1, UQCC (tumor)BRCA2, BRCA1, SP1, SIRT3, CDK2, MGMT, SKP2, ATR, SIRT1, BUB1B, USF2, CCNA2, ATM, ELF1, BARD1, FANCD2, PALB2, RAD23A, RBBP8, C11orf30, HMG20B (normal)
bullet pointbullet point
STAD (tumor)STAD (normal)
BRCA2, TP53, PLK1, HDAC1, FLNA, RAD51, CDK1, SKP2, ABL1, SIRT1, CHEK2, BUB1B, CCNA2, ELF1, AURKB, FANCG, H2AFX, FANCD2, KIF4A, MORF4L1, XRCC3 (tumor)BRCA2, BRCA1, PLK1, FLNA, RAD51, CDK1, CDK2, CCNE1, BRCC3, SKP2, ATR, CHEK2, BUB1B, CCNA2, ELF1, AURKB, BARD1, FANCD2, PALB2, KIF4A, XRCC3 (normal)
bullet pointbullet point
THCA (tumor)THCA (normal)
BRCA2, SIRT3, PLK1, FLNA, RAD51, CDK1, CDK2, TCF4, FYN, BUB1B, CCNA2, ATM, SIRT2, ELF1, AURKB, BARD1, STAT5A, FANCD2, DMC1, KIF4A, BACH1 (tumor)BRCA2, SP1, SIRT3, FLNA, RAD51, CDK2, BRCC3, MGMT, SIRT1, BUB1B, SHFM1, ATM, ELF1, BARD1, FANCD2, PALB2, RBBP8, C11orf30, KIF4A, BACH1, HMG20B (normal)
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TissGeneProg for BRCA2

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for BRCA2
TissGeneDrug for BRCA2

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for BRCA2

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0006142Malignant neoplasm of breast1358BeFree,GAD,GWASCAT,MGD,UNIPROT
umls:C0678222Breast Carcinoma1211BeFree
umls:C1140680Malignant neoplasm of ovary818BeFree,CLINVAR,GAD
umls:C0029925Ovarian Carcinoma808BeFree
umls:C1458155Mammary Neoplasms226BeFree,CTD_human,GAD,LHGDN
umls:C0346153Breast Cancer, Familial192BeFree,CLINVAR,GAD
umls:C0919267ovarian neoplasm118BeFree,CTD_human,GAD,LHGDN,RGD
umls:C0677776Hereditary Breast and Ovarian Cancer Syndrome115BeFree,CLINVAR,CTD_human,ORPHANET
umls:C0376358Malignant neoplasm of prostate87BeFree,CLINVAR,GAD
umls:C0600139Prostate carcinoma78BeFree
umls:C0015625Fanconi Anemia74BeFree,CTD_human,GAD,LHGDN,ORPHANET
umls:C0242787Malignant neoplasm of male breast73BeFree
umls:C0235974Pancreatic carcinoma70BeFree
umls:C0346647Malignant neoplasm of pancreas70BeFree,GAD
umls:C0024667Animal Mammary Neoplasms62GAD
umls:C3469521FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)59BeFree
umls:C0238033Carcinoma of Male Breast56BeFree,GAD
umls:C0596263Carcinogenesis55BeFree
umls:C1336076Sporadic Breast Carcinoma52BeFree
umls:C0677886Epithelial ovarian cancer48BeFree,GAD
umls:C1096616Contralateral breast cancer30BeFree
umls:C1333990Hereditary Nonpolyposis Colorectal Cancer26BeFree
umls:C0025202melanoma24BeFree,GAD
umls:C0007104Female Breast Carcinoma22BeFree
umls:C0235653Malignant neoplasm of female breast22BeFree
umls:C0027627Neoplasm Metastasis20BeFree
umls:C0007124Noninfiltrating Intraductal Carcinoma19BeFree,GAD,LHGDN
umls:C3539878Triple Negative Breast Neoplasms18BeFree
umls:C0009402Colorectal Carcinoma17BeFree
umls:C1527249Colorectal Cancer17BeFree,GAD
umls:C1333600Hereditary Malignant Neoplasm16BeFree
umls:C2931038Pancreatic carcinoma, familial16BeFree,ORPHANET
umls:C0238122Fallopian Tube Carcinoma15BeFree
umls:C0242788Breast Neoplasms, Male14BeFree,GAD,LHGDN
umls:C0281267bilateral breast cancer14BeFree
umls:C0853879Invasive breast carcinoma14BeFree
umls:C0008626Congenital chromosomal disease12BeFree
umls:C0030297Pancreatic Neoplasm12BeFree,CTD_human,GAD,LHGDN
umls:C0153467Malignant tumor of peritoneum11BeFree
umls:C0153579Malignant neoplasm of fallopian tube11BeFree
umls:C1710547Unilateral Breast Carcinoma11BeFree
umls:C0033578Prostatic Neoplasms10BeFree,CTD_human,GAD,LHGDN,RGD
umls:C0281361Adenocarcinoma of pancreas10BeFree
umls:C0015558Fallopian Tube Neoplasms9GAD,LHGDN
umls:C0023418leukemia9BeFree,LHGDN
umls:C0035335Retinoblastoma9BeFree
umls:C0242379Malignant neoplasm of lung9BeFree,GAD,GWASCAT
umls:C0476089Endometrial Carcinoma9BeFree
umls:C1854365BREAST CANCER 39BeFree
umls:C0001418Adenocarcinoma7BeFree,GAD,LHGDN
umls:C0004135Ataxia Telangiectasia7BeFree
umls:C0024623Malignant neoplasm of stomach7BeFree,GAD
umls:C0085390Li-Fraumeni Syndrome7BeFree,LHGDN
umls:C2931456Prostate cancer, familial7BeFree,ORPHANET
umls:C0007103Malignant neoplasm of endometrium6BeFree
umls:C0007137Squamous cell carcinoma6BeFree,GAD,LHGDN
umls:C0024299Lymphoma6BeFree,GAD
umls:C0178874Tumor Progression6BeFree
umls:C0279626Squamous cell carcinoma of esophagus6BeFree
umls:C0699791Stomach Carcinoma6BeFree
umls:C1335302Pancreatic Ductal Adenocarcinoma6BeFree
umls:C1883486Uterine Corpus Cancer6BeFree
umls:C3839280High grade serous carcinoma6BeFree
umls:C0007102Malignant tumor of colon5BeFree
umls:C0023434Chronic Lymphocytic Leukemia5BeFree,GAD
umls:C0027672Neoplastic Syndromes, Hereditary5BeFree,CLINVAR,GAD
umls:C0031149Peritoneal Neoplasms5BeFree,GAD
umls:C0206701Cystadenocarcinoma, Serous5BeFree,GAD
umls:C0699790Colon Carcinoma5BeFree
umls:C0014859Esophageal Neoplasms4BeFree,GAD
umls:C0018553Hamartoma Syndrome, Multiple4BeFree
umls:C0024301Lymphoma, Follicular4BeFree,GAD
umls:C0278704Malignant Childhood Neoplasm4BeFree
umls:C0280100Solid tumour4BeFree
umls:C0546837Malignant neoplasm of esophagus4BeFree,GAD
umls:C0684249Carcinoma of lung4BeFree
umls:C0699889Malignant Female Reproductive System Neoplasm4BeFree
umls:C0003469Anxiety Disorders3BeFree
umls:C0009375Colonic Neoplasms3BeFree,GAD
umls:C0012860DNA Damage3GAD
umls:C0023467Leukemia, Myelocytic, Acute3BeFree
umls:C0025149Medulloblastoma3BeFree,CLINVAR,CTD_human
umls:C0027626Neoplasm Invasiveness3GAD
umls:C0032927Precancerous Conditions3GAD
umls:C0037286Skin Neoplasms3GAD
umls:C0151779Cutaneous Melanoma3BeFree
umls:C0152018Esophageal carcinoma3BeFree
umls:C0220633Uveal melanoma3BeFree,GAD
umls:C0278488Carcinoma breast stage IV3BeFree
umls:C0278689Ovarian epithelial cancer recurrent3BeFree
umls:C0278996Cancer of Head and Neck3BeFree,GAD
umls:C0497327Dementia3BeFree
umls:C0558356Malignant melanoma of eye3BeFree
umls:C0948303Carcinoma of peritoneum3BeFree
umls:C1168401Squamous cell carcinoma of the head and neck3BeFree
umls:C1512981Mammary Tumorigenesis3BeFree
umls:C1838457FANCONI ANEMIA, COMPLEMENTATION GROUP D13BeFree,CLINVAR,CTD_human,MGD,ORPHANET,UNIPROT
umls:C1861906Breast Cancer, Familial Male3BeFree
umls:C2239176Liver carcinoma3BeFree
umls:C0004509Azoospermia2BeFree,GAD,LHGDN
umls:C0005684Malignant neoplasm of urinary bladder2GAD
umls:C0006118Brain Neoplasms2BeFree,GAD
umls:C0007222Cardiovascular Diseases2BeFree
umls:C0007621Neoplastic Cell Transformation2GAD
umls:C0009404Colorectal Neoplasms2GAD
umls:C0011265Presenile dementia2BeFree
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent2BeFree
umls:C0014170Endometrial Neoplasms2GAD,LHGDN
umls:C0018923Hemangiosarcoma2BeFree
umls:C0023903Liver neoplasms2BeFree
umls:C0025500Mesothelioma2BeFree
umls:C0027643Neoplasm Recurrence, Local2GAD
umls:C0027663Neoplasms, Multiple Primary2GAD
umls:C0027708Nephroblastoma2BeFree,CTD_human,GAD
umls:C0028960Oligospermia2BeFree,GAD
umls:C0029463Osteosarcoma2BeFree,RGD
umls:C0031269Peutz-Jeghers Syndrome2BeFree
umls:C0032580Adenomatous Polyposis Coli2BeFree
umls:C0042162Uveal Neoplasms2GAD
umls:C0079744Diffuse Large B-Cell Lymphoma2BeFree,GAD
umls:C0154084Stage 0 Breast Carcinoma2BeFree
umls:C0205747Familial Atypical Multiple Mole-Melanoma2BeFree
umls:C0206692Carcinoma, Lobular2BeFree,GAD
umls:C0238339Hereditary pancreatitis2BeFree
umls:C0276496Familial Alzheimer Disease (FAD)2BeFree
umls:C0424605Developmental delay (disorder)2BeFree
umls:C0494165Secondary malignant neoplasm of liver2BeFree
umls:C0677898invasive cancer2BeFree
umls:C0685938Malignant neoplasm of gastrointestinal tract2BeFree
umls:C0686619Secondary malignant neoplasm of lymph node2BeFree
umls:C0861727Pancreatic adenocarcinoma metastatic2BeFree
umls:C0862506Borderline ovarian tumour2BeFree
umls:C0878500Intraepithelial Neoplasia2BeFree
umls:C1134719Invasive Ductal Breast Carcinoma2BeFree,GAD
umls:C1168327High-Grade Prostatic Intraepithelial Neoplasia2BeFree
umls:C1176475Ductal Carcinoma2BeFree
umls:C1292769Precursor B-cell lymphoblastic leukemia2BeFree
umls:C1333992Hereditary Ovarian Carcinoma2BeFree
umls:C1516170Cancer Cell Growth2BeFree
umls:C1520166Xenograft Model2BeFree
umls:C1559271Non-Malignant Ascites Adverse Event2BeFree
umls:C1856689FRIEDREICH ATAXIA 12BeFree
umls:C2675080Li-Fraumeni-Like Syndrome2BeFree
umls:C2931822Nasopharyngeal carcinoma2BeFree
umls:C2936791Antley-Bixler Syndrome, Autosomal Dominant2BeFree
umls:C2986665Early-Stage Breast Carcinoma2BeFree
umls:C3549742Breast cancer, lobular2BeFree
umls:C0000786Spontaneous abortion1GAD
umls:C0001815Primary Myelofibrosis1BeFree
umls:C0002453Amenorrhea1BeFree
umls:C0005586Bipolar Disorder1BeFree
umls:C0005859Bloom Syndrome1BeFree
umls:C0007095Carcinoid Tumor1BeFree
umls:C0007107Malignant neoplasm of larynx1BeFree
umls:C0007115Malignant neoplasm of thyroid1BeFree
umls:C0007117Basal cell carcinoma1GAD
umls:C0007133Carcinoma, Papillary1BeFree
umls:C0011847Diabetes1BeFree
umls:C0011849Diabetes Mellitus1BeFree
umls:C0013336Dwarfism1BeFree
umls:C0014175Endometriosis1LHGDN
umls:C0015414Eye Neoplasms1GAD
umls:C0016412Folic Acid Deficiency1BeFree
umls:C0016667Fragile X Syndrome1BeFree
umls:C0017185Gastrointestinal Neoplasms1GAD
umls:C0017638Glioma1CTD_human,GAD
umls:C0018206granulosa cell tumor1BeFree
umls:C0018418Gynecomastia1BeFree
umls:C0019829Hodgkin Disease1GAD
umls:C0021364Male infertility1BeFree,GAD
umls:C0022116Ischemia1BeFree
umls:C0023530Leukopenia1BeFree
umls:C0024117Chronic Obstructive Airway Disease1GAD
umls:C0024121Lung Neoplasms1CTD_human
umls:C0024236Lymphedema1BeFree
umls:C0024305Lymphoma, Non-Hodgkin1GAD
umls:C0025267Multiple Endocrine Neoplasia Type 11BeFree
umls:C0025286Meningioma1BeFree
umls:C0025517Metabolic Diseases1BeFree
umls:C0026640Mouth Neoplasms1GAD
umls:C0026769Multiple Sclerosis1GAD
umls:C0026946Mycoses1BeFree
umls:C0027066Myoclonus1BeFree
umls:C0027404Narcolepsy1GAD
umls:C0027654Embryonal Neoplasm1BeFree
umls:C0027831Neurofibromatosis 11BeFree
umls:C0027947Neutropenia1BeFree
umls:C0029928Ovarian Diseases1GAD
umls:C0031117Peripheral Neuropathy1CTD_human
umls:C0032002Pituitary Diseases1BeFree
umls:C0032285Pneumonia1BeFree
umls:C0033027Preleukemia1BeFree
umls:C0036341Schizophrenia1BeFree
umls:C0038644Sudden infant death syndrome1BeFree
umls:C0041296Tuberculosis1BeFree
umls:C0079731B-Cell Lymphomas1LHGDN
umls:C0085136Central Nervous System Neoplasms1BeFree
umls:C0085159Seasonal Affective Disorder1BeFree
umls:C0085183Neoplasms, Second Primary1GAD
umls:C0086132Depressive Symptoms1BeFree
umls:C0086543Cataract1RGD
umls:C0149782Squamous cell carcinoma of lung1BeFree
umls:C0152013Adenocarcinoma of lung (disorder)1BeFree
umls:C0153567Uterine Cancer1BeFree
umls:C0153653Malignant tumor of parathyroid gland1BeFree
umls:C0153676Secondary malignant neoplasm of lung1BeFree
umls:C0153690Secondary malignant neoplasm of bone1BeFree
umls:C0162872Aortic Aneurysm, Thoracic1BeFree
umls:C0206663Neuroectodermal Tumor, Primitive1BeFree
umls:C0206681Adenocarcinoma, Clear Cell1BeFree
umls:C0206684Sebaceous Adenocarcinoma1BeFree
umls:C0206685Acinar Cell Carcinoma1BeFree
umls:C0206720Squamous Cell Neoplasms1CTD_human
umls:C0260037Multiple tumors1BeFree
umls:C0270814Spastic syndrome1BeFree
umls:C0279628Adenocarcinoma Of Esophagus1BeFree
umls:C0279661Acinar cell carcinoma of pancreas1BeFree
umls:C0279980Extraosseous Ewings sarcoma-primitive neuroepithelial tumor1BeFree
umls:C0280220stage, ovarian epithelial cancer1BeFree
umls:C0280324Laryngeal Squamous Cell Carcinoma1BeFree
umls:C0302592Cervix carcinoma1BeFree
umls:C0333463Senile Plaques1BeFree
umls:C0334359Papillary serous cystadenocarcinoma1BeFree
umls:C0334371Secretory breast carcinoma1BeFree
umls:C0338457Aphasia, Progressive1BeFree
umls:C0342276Maturity onset diabetes mellitus in young1BeFree
umls:C0342573PITUITARY DWARFISM I1BeFree,CLINVAR
umls:C0346156Benign neoplasm of breast1BeFree
umls:C0346648Malignant tumor of exocrine pancreas1BeFree
umls:C0347176Carcinoma in situ of fallopian tube1BeFree
umls:C0376545Hematologic Neoplasms1LHGDN
umls:C0376628Chromosome Breakage1GAD
umls:C0392998Carcinosarcoma of ovary1BeFree
umls:C0398623Thrombophilia1BeFree
umls:C0424091Loss of interest1BeFree
umls:C0521158Recurrent tumor1BeFree
umls:C0524851Neurodegenerative Disorders1BeFree
umls:C0549473Thyroid carcinoma1BeFree
umls:C0684337Ewings sarcoma-primitive neuroectodermal tumor (PNET)1BeFree
umls:C0687150Parathyroid Gland Adenocarcinoma1BeFree
umls:C0740380Varicella zoster1BeFree
umls:C0750901Alzheimer Disease, Early Onset1BeFree
umls:C0751416Pelvic Cancer1BeFree
umls:C0751690Malignant Peripheral Nerve Sheath Tumor1BeFree
umls:C0751887Medullary Neoplasms1BeFree
umls:C0752347Lewy Body Disease1BeFree
umls:C0815107psychological distress1BeFree
umls:C0854917Rhabdoid Tumor of the Kidney1BeFree
umls:C0887833Carcinoma, Pancreatic Ductal1BeFree
umls:C1112474Small cell carcinoma of esophagus1BeFree
umls:C1261473Sarcoma1BeFree
umls:C1266082Atypical medullary carcinoma1BeFree
umls:C1301034Pancreatic intraepithelial neoplasia1BeFree
umls:C1318485Liver regeneration disorder1BeFree
umls:C1332442BRCA1 Syndrome1BeFree
umls:C1333991Hereditary Non-Polyposis Colon Cancer Type 21BeFree
umls:C1334274Invasive Carcinoma1BeFree
umls:C1334411Locally Metastatic Malignant Neoplasm1BeFree
umls:C1335177Ovarian Serous Adenocarcinoma1BeFree
umls:C1336048Spinal Cord Primitive Neuroectodermal Tumor1BeFree
umls:C1336735Treatment related acute myeloid leukaemia1BeFree
umls:C1514428Primary Peritoneal Carcinoma1BeFree
umls:C1762616Meningioma, benign, no ICD-O subtype1BeFree
umls:C1839780FRAGILE X TREMOR/ATAXIA SYNDROME1BeFree
umls:C1961099Precursor T-Cell Lymphoblastic Leukemia-Lymphoma1BeFree
umls:C2216702malignant neoplasm of breast staging1BeFree
umls:C2314896Familial Atypical Mole Melanoma Syndrome1BeFree
umls:C2936349Plaque, Amyloid1BeFree
umls:C2986662Multifocal Breast Carcinoma1BeFree
umls:C3274709Contralateral Breast Carcinoma1BeFree
umls:C3463824MYELODYSPLASTIC SYNDROME1BeFree
umls:C3536893Ewing Sarcoma/Peripheral Primitive Neuroectodermal Tumor1BeFree
umls:C3839507Diminished ovarian reserve1BeFree
umls:C2675520BREAST-OVARIAN CANCER, FAMILIAL, SUSCEPTIBILITY TO, 20CLINVAR,CTD_human
umls:C2751641GLIOMA SUSCEPTIBILITY 30CLINVAR
umls:C3150546PANCREATIC CANCER, SUSCEPTIBILITY TO, 20CLINVAR