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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for CNTN2
check button Gene summary
Basic gene informationGene symbolCNTN2
Gene namecontactin 2 (axonal)
SynonymsAXT|FAME5|TAG-1|TAX|TAX1
CytomapUCSC genome browser: 1q32.1
Type of geneprotein-coding
RefGenesNM_005076.3,
Descriptionaxonal glycoprotein TAG-1axonin-1 cell adhesion moleculecontactin 2 (transiently expressed)contactin-2transient axonal glycoprotein 1transiently-expressed axonal glycoprotein
Modification date20141207
dbXrefs MIM : 190197
HGNC : HGNC
Ensembl : ENSG00000184144
HPRD : 01826
Vega : OTTHUMG00000037105
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_CNTN2
BioGPS: 6900
PathwayNCI Pathway Interaction Database: CNTN2
KEGG: CNTN2
REACTOME: CNTN2
Pathway Commons: CNTN2
ContextiHOP: CNTN2
ligand binding site mutation search in PubMed: CNTN2
UCL Cancer Institute: CNTN2
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesHPA,TiGER
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Brain
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)GBM,LGG
Reference showing the relevant tissue of CNTN2
Description by TissGene annotationsFused withTSGene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for CNTN2

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
HNSC-2.148492943-0.721232478-1.4272604651.19E-068.93E-06
BRCA-0.6416336610.602964585-1.2445982461.49E-105.78E-10
PRAD-0.6989416910.342537156-1.0414788466.46E-063.83E-05
COAD-1.8935378442.283581386-4.1771192315.98E-153.28E-13
KICH-2.742142152-1.122410152-1.6197325.93E-072.32E-06
LUSC-1.08009878-2.1797321131.0996333330.009020.014467977
BLCA-1.8342880470.783238269-2.6175263160.0001680.001653239
STAD-1.0726176521.145707348-2.2183258.80E-050.000689589


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TissGene-miRNA for CNTN2

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for CNTN2
TissGeneSNV for CNTN2

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.W921*SKCM1
p.G988RLUAD1
p.S718GLIHC1
p.E365GLIHC1
p.R506XSTAD1
p.E374VPCPG1
p.R1016CGBM1
p.A873VSKCM1
p.R359CCOAD1
p.T676NLUAD1
p.W544*PAAD1
p.V888MCOAD1
p.P289ALGG1
p.R813MLUAD1
p.N343SSKCM1
p.D618VBLCA1
p.R736WLUAD1
p.G855ESKCM1
p.R793CSKCM1
p.R789CHNSC1
p.V1024DSARC1
p.E809KBLCA1
p.E828KSKCM1
p.E134KSKCM1
p.G743VSTAD1
p.Q326*BRCA1
p.V1001LBRCA1
p.D954VCOAD1
p.T210PBRCA1
p.R274HSTAD1
p.G364RSTAD1
p.I690MLIHC1
p.A159VHNSC1
p.M538ISKCM1
p.V729IHNSC1
p.E55KSKCM1
p.R1016CLGG1
p.W852LLIHC1
p.I569NLUSC1
p.E975KSTAD1
p.A406VUCS1
p.M80ISKCM1
p.R1016CCOAD1
p.V604DKIRC1
p.A577THNSC1
p.W852CBLCA1
p.P637LESCA1
p.F135LUCEC1
p.R64QSKCM1
p.W628*LUAD1
p.S407CHNSC1
p.W653RLUAD1
p.A713TTHYM1
p.E799KSTAD1
p.G265ESKCM1
p.G612RSKCM1
p.R793HSTAD1
p.R893PSTAD1
p.G391SUCEC1
p.R793CSTAD1
p.D535NCOAD1
p.D470HKIRP1
p.G716RSKCM1
p.L170HLUAD1
p.V412MSARC1
p.R657WSKCM1
p.I436NSTAD1
p.L950PLUAD1
p.P366LCOAD1
p.S206FSKCM1
p.A351GCOAD1
p.R6KSKCM1
p.D618NBLCA1
p.D535NSKCM1
p.T591MSTAD1
p.P43LLIHC1
p.W921XSKCM1
p.D339NLUAD1
p.E138KSKCM1
p.V819ALIHC1
p.R1002KSKCM1
p.A899VKICH1
p.W758RACC1
p.E124KSKCM1
p.A63VLUAD1
p.R140QHNSC1
p.P972TLUAD1
p.T676NBLCA1
p.E785KHNSC1
p.S479NSTAD1
p.L437VDLBC1
p.R432GBLCA1
p.G990RSKCM1
p.D954NBLCA1
p.E483*UCEC1
p.P469LESCA1
p.V729ISTAD1
p.V805LLUAD1
p.T316ISKCM1
p.L153FCOAD1
p.W544XPAAD1
p.E776KSKCM1
p.L603MUCEC1
p.P699SUCEC1
p.S334WBRCA1
p.D389NBLCA1
p.G965DHNSC1
p.Q394*LUAD1
p.V151LCHOL1
p.Y781NLUAD1
p.E79VCHOL1
p.G181RSARC1
p.R762QHNSC1
p.E975KCESC1
p.G582WESCA1
p.W25*SKCM1
p.R506QSKCM1
p.E599KSKCM1
p.G990RUCEC1
p.G319DBLCA1
p.V412MLUAD1
p.R684WUVM1
p.S1028FSKCM1
p.E858KSKCM1
p.V424MCOAD1
p.P442HLUAD1
p.G118CPRAD1
p.A408TSTAD1
p.E457XCOAD1
p.R704QCOAD1
p.G877DUCEC1


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TissGeneCNV for CNTN2

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for CNTN2

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNABP362529MAT2A-CNTN2chr2:85770157chr1:205036226
Chimerdb3.0ChiTaRsNAW25115C10orf137-CNTN2chr10:127441464chr1:205013685


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TissGeneNet for CNTN2

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
CNTN2, SUMO2, SCN9A, HDAC6, SUMO1, MCM3, UBE2N, SUV39H1, KAT2B, MCM2, CHUK, EP300, MCM7, OPTN, NFYB, SUMO3, CNTN1, CNTNAP2, NRCAM, TAX1BP3, VAC14 (tumor)CNTN2, UBC, SUMO2, HDAC1, SUMO1, NCAN, UBE2N, KAT2B, CHUK, RAB3GAP2, EGFR, OPTN, SRF, L1CAM, MCM6, SUMO3, CNTNAP2, TUBG1, NRCAM, TAX1BP1, VAC14 (normal)
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COAD (tumor)COAD (normal)
CNTN2, SCN9A, HDAC3, HDAC6, HDAC1, SUMO1, NCAN, MCM3, CHUK, EP300, RAB3GAP2, OPTN, NFYB, SRF, L1CAM, STARD13, SUMO3, CNTN1, TUBG1, NRCAM, TAX1BP3 (tumor)CNTN2, MAP3K7, SCN9A, HDAC1, NCAN, MCM3, UBE2N, CDK2, KAT2B, MCM2, EP300, RAB3GAP2, EGFR, MCM7, NFYB, SRF, L1CAM, STARD13, TAB2, CNTN1, TUBG1 (normal)
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HNSC (tumor)HNSC (normal)
CNTN2, UBC, SUMO2, SCN9A, HDAC6, HDAC1, NCAN, UBE2N, CDK2, MCM2, CHUK, MCM7, L1CAM, MCM6, STARD13, TAB2, SUMO3, SMYD3, TUBG1, NRCAM, TAX1BP3 (tumor)CNTN2, UBC, HDAC6, IKBKB, NCAN, MCM3, UBE2N, SUV39H1, CDK2, KAT2B, MCM2, MCM7, OPTN, NFYB, MCM6, SUMO3, CNTN1, TUBG1, NRCAM, TAX1BP3, VAC14 (normal)
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KICH (tumor)KICH (normal)
CNTN2, IKBKG, HDAC6, HDAC1, IKBKB, SUMO1, NCAN, MCM3, UBE2N, MCM2, CHUK, EP300, EGFR, MCM7, OPTN, L1CAM, STARD13, TAB2, TUBG1, TAX1BP3, TAX1BP1 (tumor)CNTN2, UBC, SUMO2, SCN9A, HDAC6, HDAC1, IKBKB, SUMO1, NCAN, UBE2N, CDK2, CHUK, EGFR, OPTN, NFYB, SRF, STARD13, SUMO3, CNTN1, CNTNAP2, TAX1BP3 (normal)
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KIRC (tumor)KIRC (normal)
CNTN2, SUMO2, SCN9A, HDAC6, HDAC1, NCAN, MCM3, UBE2N, MCM2, EGFR, MCM7, OPTN, NFYB, SRF, L1CAM, STARD13, SUMO3, SMYD3, TUBG1, TAX1BP3, VAC14 (tumor)CNTN2, UBC, MAP3K7, IKBKG, SCN9A, HDAC1, NCAN, MCM3, UBE2N, SUV39H1, KAT2B, MCM2, CHUK, EP300, NFYB, L1CAM, MCM6, SMYD3, TUBG1, TAX1BP3, VAC14 (normal)
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KIRP (tumor)KIRP (normal)
CNTN2, SUMO2, IKBKG, SCN9A, HDAC3, HDAC6, HDAC1, IKBKB, MCM3, MCM2, CHUK, RAB3GAP2, MCM7, OPTN, NFYB, L1CAM, TAB2, SUMO3, SMYD3, NRCAM, TAX1BP3 (tumor)CNTN2, MAP3K7, HDAC3, HDAC6, HDAC1, IKBKB, NCAN, SUV39H1, CDK2, KAT2B, MCM2, EP300, MCM7, L1CAM, MCM6, SMYD3, CNTNAP2, TUBG1, NRCAM, TAX1BP1, VAC14 (normal)
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LIHC (tumor)LIHC (normal)
CNTN2, IKBKG, SCN9A, HDAC6, HDAC1, IKBKB, SUMO1, MCM3, CDK2, KAT2B, MCM2, EGFR, MCM7, NFYB, L1CAM, MCM6, TAB2, SMYD3, TUBG1, TAX1BP3, VAC14 (tumor)CNTN2, UBC, SUMO2, IKBKG, NCAN, SUV39H1, KAT2B, MCM2, CHUK, RAB3GAP2, EGFR, MCM7, OPTN, NFYB, STARD13, SUMO3, CNTN1, SMYD3, CNTNAP2, TAX1BP3, TAX1BP1 (normal)
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LUAD (tumor)LUAD (normal)
CNTN2, UBC, HDAC1, IKBKB, NCAN, MCM3, SUV39H1, KAT2B, MCM2, CHUK, MCM7, OPTN, NFYB, L1CAM, MCM6, STARD13, TAB2, CNTN1, CNTNAP2, TAX1BP1, VAC14 (tumor)CNTN2, SUMO2, IKBKG, SCN9A, HDAC6, IKBKB, SUMO1, NCAN, UBE2N, SUV39H1, KAT2B, CHUK, EP300, EGFR, MCM7, NFYB, L1CAM, STARD13, CNTN1, SMYD3, TUBG1 (normal)
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LUSC (tumor)LUSC (normal)
CNTN2, MAP3K7, SUMO2, IKBKG, HDAC6, HDAC1, IKBKB, SUMO1, MCM3, UBE2N, SUV39H1, MCM2, CHUK, EP300, MCM7, NFYB, L1CAM, MCM6, TUBG1, TAX1BP1, VAC14 (tumor)CNTN2, MAP3K7, HDAC1, NCAN, MCM3, SUV39H1, CDK2, MCM2, CHUK, RAB3GAP2, MCM7, OPTN, NFYB, L1CAM, MCM6, STARD13, TAB2, CNTNAP2, NRCAM, TAX1BP3, TAX1BP1 (normal)
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PRAD (tumor)PRAD (normal)
CNTN2, IKBKG, SCN9A, HDAC3, HDAC6, HDAC1, IKBKB, SUMO1, NCAN, MCM3, UBE2N, CDK2, OPTN, SRF, L1CAM, MCM6, STARD13, SUMO3, CNTN1, CNTNAP2, TAX1BP3 (tumor)CNTN2, MAP3K7, IKBKG, SCN9A, SUMO1, MCM3, UBE2N, CHUK, OPTN, NFYB, SRF, L1CAM, MCM6, STARD13, TAB2, CNTN1, SMYD3, CNTNAP2, TUBG1, TAX1BP3, TAX1BP1 (normal)
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STAD (tumor)STAD (normal)
CNTN2, SCN9A, HDAC3, HDAC6, HDAC1, NCAN, MCM2, EP300, MCM7, OPTN, NFYB, SRF, L1CAM, STARD13, TAB2, CNTN1, SMYD3, CNTNAP2, TUBG1, NRCAM, TAX1BP3 (tumor)CNTN2, SCN9A, HDAC1, SUMO1, NCAN, MCM3, SUV39H1, CDK2, KAT2B, MCM2, EP300, MCM7, NFYB, SRF, L1CAM, MCM6, STARD13, TAB2, CNTN1, TUBG1, TAX1BP1 (normal)
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THCA (tumor)THCA (normal)
CNTN2, MAP3K7, SUMO2, SCN9A, HDAC3, IKBKB, SUMO1, MCM3, SUV39H1, CDK2, MCM2, CHUK, RAB3GAP2, L1CAM, MCM6, TAB2, CNTN1, SMYD3, CNTNAP2, TAX1BP3, VAC14 (tumor)CNTN2, MAP3K7, IKBKG, HDAC1, IKBKB, NCAN, CDK2, KAT2B, MCM2, EP300, EGFR, MCM7, OPTN, SRF, MCM6, STARD13, SMYD3, CNTNAP2, NRCAM, TAX1BP3, TAX1BP1 (normal)
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TissGeneProg for CNTN2

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for CNTN2
TissGeneDrug for CNTN2

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for CNTN2

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0023493Adult T-Cell Lymphoma/Leukemia77BeFree,LHGDN
umls:C0023492Leukemia, T-Cell21BeFree
umls:C0030481Tropical Spastic Paraparesis8BeFree
umls:C0598766Leukemogenesis5BeFree
umls:C0023418leukemia4BeFree
umls:C0393819Polyradiculoneuropathy, Chronic Inflammatory Demyelinating4BeFree,GAD
umls:C0596263Carcinogenesis4BeFree
umls:C1512326Human T-cell lymphotropic virus 1 infection4BeFree
umls:C0019693HIV Infections3BeFree
umls:C0003864Arthritis2BeFree
umls:C0003873Rheumatoid Arthritis2BeFree
umls:C0028945oligodendroglioma2BeFree
umls:C0375019Human T-cell lymphotrophic virus, type I [HTLV-I]2BeFree
umls:C0555198Malignant Glioma2BeFree
umls:C0751396Well Differentiated Oligodendroglioma2BeFree
umls:C0004114Astrocytoma1BeFree
umls:C0005956Bone Marrow Diseases1BeFree
umls:C0014544Epilepsy1BeFree
umls:C0015644Muscular fasciculation1BeFree
umls:C0017636Glioblastoma1BeFree
umls:C0017638Glioma1BeFree
umls:C0020097HTLV-I Infections1BeFree
umls:C0022408Arthropathy1BeFree
umls:C0024314Lymphoproliferative Disorders1BeFree
umls:C0025202melanoma1BeFree
umls:C0025958Microcephaly1BeFree
umls:C0029925Ovarian Carcinoma1BeFree
umls:C0036572Seizures1BeFree
umls:C0037928Spinal Cord Diseases1BeFree
umls:C0040100Thymoma1BeFree
umls:C0040822Tremor1BeFree
umls:C0079731B-Cell Lymphomas1BeFree
umls:C0085110Severe Combined Immunodeficiency1BeFree
umls:C0085655Polymyositis1BeFree
umls:C0086981Sicca Syndrome1BeFree
umls:C0162678Neurofibromatoses1BeFree
umls:C0175697Van der Woude syndrome1BeFree
umls:C0242338HTLV Infections1BeFree
umls:C0263680Chronic arthritis1BeFree
umls:C0334590Anaplastic Oligodendroglioma1BeFree
umls:C0338656Impaired cognition1BeFree
umls:C1140680Malignant neoplasm of ovary1BeFree
umls:C1516170Cancer Cell Growth1BeFree
umls:C1518296Neuropathogenesis1BeFree
umls:C1559154Rash and Dermatitis Adverse Event Associated with Chemoradiation1BeFree
umls:C1621958Glioblastoma Multiforme1BeFree
umls:C3809374EPILEPSY, FAMILIAL ADULT MYOCLONIC, 50CLINVAR