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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for HNF1B
check button Gene summary
Basic gene informationGene symbolHNF1B
Gene nameHNF1 homeobox B
SynonymsFJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1
CytomapUCSC genome browser: 17q12
Type of geneprotein-coding
RefGenesNM_000458.2,
NM_001165923.2,NM_006481.1,
DescriptionHNF-1-betaHNF1 beta Ahepatocyte nuclear factor 1-betahomeoprotein LFB3transcription factor 2, hepatic
Modification date20141207
dbXrefs MIM : 189907
HGNC : HGNC
Ensembl : ENSG00000275410
HPRD : 08926
Vega : OTTHUMG00000188478
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_HNF1B
BioGPS: 6928
PathwayNCI Pathway Interaction Database: HNF1B
KEGG: HNF1B
REACTOME: HNF1B
Pathway Commons: HNF1B
ContextiHOP: HNF1B
ligand binding site mutation search in PubMed: HNF1B
UCL Cancer Institute: HNF1B
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Kidney
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)KIRC,KIRP,KICH
Reference showing the relevant tissue of HNF1B
Description by TissGene annotationsProtective TissGene in OS
Protective TissGene in RFS
Cancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0001822kidney development21281489
GO:0045893positive regulation of transcription, DNA-templated15509593
GO:0060261positive regulation of transcription initiation from RNA polymerase II promoter15355349
GO:0001822kidney development21281489
GO:0045893positive regulation of transcription, DNA-templated15509593
GO:0060261positive regulation of transcription initiation from RNA polymerase II promoter15355349


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TissGeneExp for HNF1B

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LUSC-1.9766784183.36246668-5.3391450982.24E-202.77E-19
KICH3.6343155436.066363543-2.4320483.01E-102.15E-09
STAD3.4097860430.0255891683.3841968752.49E-050.000242425


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TissGene-miRNA for HNF1B

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples
ACChsa-miR-363-3pMIMAT00007070.014-0.2878
ACChsa-miR-363-3pMIMAT00007070.014-0.2878


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TissGeneMut for HNF1B
TissGeneSNV for HNF1B

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.T417MGBM2
p.R526CSKCM2
p.N302KKIRC2
p.M124ISKCM2
p.S151FSKCM2
p.R232HOV1
p.R233HLGG1
p.S364LHNSC1
p.Q338XLIHC1
p.A443GHNSC1
p.S216FSKCM1
p.M193ISKCM1
p.P50TLGG1
p.T194RCOAD1
p.M469ISKCM1
p.R174KHNSC1
p.W238*SKCM1
p.G531ESKCM1
p.S404LSKCM1
p.F528SGBM1
p.Q431EHNSC1
p.G407ESKCM1
p.D220NSKCM1
p.D195NCOAD1
p.M495ISKCM1
p.G287RSARC1
p.Q506RUCEC1
p.P339TSARC1
p.L410FPAAD1
p.Q182XPCPG1
p.R303HHNSC1
p.N394SLGG1
p.L168VCESC1
p.Q338*LIHC1
p.P401SSKCM1
p.Q182*BRCA1
p.S308FSKCM1
p.D194NSKCM1
p.P427SSKCM1
p.D141NCOAD1
p.S334FSKCM1
p.E178KBLCA1
p.V187FLUSC1
p.R304GBRCA1
p.L469MUCEC1
p.N426TREAD1
p.G285SPRAD1
p.V413FSTAD1
p.S242FSKCM1
p.L114PLIHC1
p.A249DLGG1
p.H336QHNSC1
p.S378LSKCM1
p.S539RCESC1
p.G40RCOAD1
p.S334FTHYM1
p.A97VSARC1
p.Q243*SKCM1
p.H368YBLCA1
p.R232LSKCM1
p.G191ESKCM1
p.S331FSKCM1
p.A167TUCEC1
p.E259KSKCM1
p.G285SSTAD1
p.D141YCESC1
p.E44QCESC1
p.W212XSKCM1
p.E233KSKCM1
p.G215RSTAD1
p.V27FLUAD1
p.S224CHNSC1
p.P519LOV1


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TissGeneCNV for HNF1B

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for HNF1B

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNACR745050HNF1B-HNF1Bchr17:36102128chr17:36102147
Chimerdb3.0FusionScanESCATCGA-L5-A88T-01ASYNRG-HNF1BIn-Framechr17:35921296chr17:36070671
Chimerdb3.0FusionScanESCATCGA-L5-A4OQ-01AHNF1B-ARHGAP40Out-of-Framechr17:36091585chr20:37252001
TCGAfusionPortalPRADALUADTCGA-97-A4M3-01ACHKA-HNF1BIn-frameChr11:67842184Chr17:36047395


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TissGeneNet for HNF1B

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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COAD (tumor)COAD (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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HNSC (tumor)HNSC (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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KICH (tumor)KICH (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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KIRC (tumor)KIRC (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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KIRP (tumor)KIRP (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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LIHC (tumor)LIHC (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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LUAD (tumor)LUAD (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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LUSC (tumor)LUSC (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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PRAD (tumor)PRAD (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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STAD (tumor)STAD (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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THCA (tumor)THCA (normal)
HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (tumor)HNF1B, HNF4A, SPP1, CREB1, HIST1H3A, CREBBP, ATF1, PCBD1, HNF1A, SI, MUC4, SLC22A8, ACE2, NNMT (normal)
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TissGeneProg for HNF1B

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for HNF1B
TissGeneDrug for HNF1B

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for HNF1B

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent45BeFree,CLINVAR,CTD_human,GAD,GWASCAT,LHGDN,UNIPROT
umls:C0376358Malignant neoplasm of prostate32BeFree,GAD,GWASCAT
umls:C0011849Diabetes Mellitus30BeFree,GAD
umls:C0011847Diabetes27BeFree
umls:C0431693Renal cysts and diabetes syndrome26BeFree,CLINVAR,CTD_human,UNIPROT
umls:C0342276Maturity onset diabetes mellitus in young25BeFree
umls:C0022658Kidney Diseases15BeFree,GAD
umls:C0600139Prostate carcinoma14BeFree
umls:C0268800Simple renal cyst13BeFree
umls:C0000768Congenital Abnormality12BeFree
umls:C0029925Ovarian Carcinoma10BeFree
umls:C0033578Prostatic Neoplasms9CTD_human,GAD,LHGDN
umls:C1140680Malignant neoplasm of ovary9BeFree,GWASCAT
umls:C0007134Renal Cell Carcinoma6BeFree,CTD_human
umls:C0206681Adenocarcinoma, Clear Cell6BeFree
umls:C0011854Diabetes Mellitus, Insulin-Dependent5BeFree,GAD
umls:C0022661Kidney Failure, Chronic5BeFree,GAD
umls:C0677886Epithelial ovarian cancer5BeFree,GWASCAT
umls:C0010709Cyst4BeFree,LHGDN
umls:C0035078Kidney Failure4BeFree
umls:C0266292Congenital anomaly of the kidney4BeFree
umls:C0476089Endometrial Carcinoma4BeFree,GWASCAT
umls:C1968949Cakut4BeFree
umls:C0007103Malignant neoplasm of endometrium3BeFree
umls:C0022680Polycystic Kidney Diseases3BeFree
umls:C0040136Thyroid Neoplasm3LHGDN
umls:C0158687Congenital malformation of genital organs3BeFree
umls:C0268113Familial juvenile gout3BeFree
umls:C0403447Chronic Kidney Insufficiency3BeFree
umls:C0596263Carcinogenesis3BeFree
umls:C0740394Hyperuricemia3BeFree,LHGDN
umls:C0919267ovarian neoplasm3BeFree,LHGDN
umls:C1561643Chronic Kidney Diseases3BeFree
umls:C1868139Medullary cystic kidney disease 13BeFree
umls:C1883486Uterine Corpus Cancer3BeFree
umls:C3714581Multicystic Dysplastic Kidney3BeFree
umls:C0004352Autistic Disorder2BeFree
umls:C0005744Blepharophimosis2BeFree
umls:C0008073Developmental Disabilities2BeFree
umls:C0011881Diabetic Nephropathy2BeFree,LHGDN
umls:C0014170Endometrial Neoplasms2BeFree,GAD
umls:C0022665Kidney Neoplasm2BeFree
umls:C0028754Obesity2BeFree,GAD
umls:C0085548Autosomal Recessive Polycystic Kidney Disease2BeFree,LHGDN
umls:C0267963Exocrine pancreatic insufficiency2BeFree
umls:C1112213Cholestasis in newborn2BeFree
umls:C1567435Polycystic Kidney - body part2BeFree
umls:C1698581Rokitansky Kuster Hauser syndrome2BeFree
umls:C0001430Adenoma1BeFree
umls:C0008370Cholestasis1BeFree
umls:C0009375Colonic Neoplasms1BeFree
umls:C0011065Cessation of life1LHGDN
umls:C0011882Diabetic Neuropathies1GAD
umls:C0018099Gout1LHGDN
umls:C0018817Atrial Septal Defects1BeFree
umls:C0019562Von Hippel-Lindau Syndrome1BeFree
umls:C0019693HIV Infections1GAD
umls:C0020502Hyperparathyroidism1BeFree
umls:C0022660Kidney Failure, Acute1BeFree
umls:C0022679Cystic kidney1BeFree
umls:C0023801Lipomatosis1BeFree
umls:C0024473Magnesium Deficiency1GAD
umls:C0027707Nephritis, Interstitial1BeFree
umls:C0031511Pheochromocytoma1BeFree
umls:C0040336Tobacco Use Disorder1GAD
umls:C0042580Vesico-Ureteral Reflux1GAD
umls:C0043046Wasting Syndrome1GAD
umls:C0085215Ovarian Failure, Premature1BeFree
umls:C0085413Polycystic Kidney, Autosomal Dominant1BeFree,LHGDN
umls:C0158981Neonatal diabetes mellitus1BeFree
umls:C0221033Trisomy X syndrome1BeFree
umls:C0235419Hyperuricemic nephropathy1BeFree
umls:C0238304Chronic interstitial nephritis1BeFree
umls:C0243050Cardiovascular Abnormalities1BeFree
umls:C0265234Branchio-Oto-Renal Syndrome1BeFree
umls:C0266174Duodenal atresia1BeFree
umls:C0266295Congenital hypoplasia of kidney1BeFree
umls:C0266383Uterine Anomalies1BeFree
umls:C0271650Impaired glucose tolerance1BeFree
umls:C0279663Serous cystadenocarcinoma ovary1BeFree
umls:C0332910bilateral agenesis1BeFree
umls:C0334054cystic disease1BeFree
umls:C0338656Impaired cognition1BeFree
umls:C0346429Multiple malignancy1BeFree
umls:C0403553Renal dysplasia and retinal aplasia (disorder)1BeFree
umls:C0494165Secondary malignant neoplasm of liver1BeFree
umls:C0687120Nephronophthisis1BeFree
umls:C1266042Chromophobe Renal Cell Carcinoma1BeFree,CLINVAR
umls:C1336708Testicular Germ Cell Tumor1GWASCAT
umls:C1378703Renal carcinoma1BeFree
umls:C1567426Unilateral Multicystic Dysplastic Kidney1BeFree,ORPHANET
umls:C1800706Idiopathic Pulmonary Fibrosis1BeFree
umls:C1835171Hypomagnesemia 2, renal1BeFree,ORPHANET
umls:C1955934Trichothiodystrophy Syndromes1BeFree
umls:C2239176Liver carcinoma1BeFree
umls:C2931642Benign symmetrical lipomatosis1BeFree
umls:C2939174Medullary cystic disease1BeFree
umls:C36653822,8-Dihydroxyadenine Urolithiasis1BeFree
umls:C3812408Congenital renal cyst1BeFree
umls:C1567427Bilateral Multicystic Dysplastic Kidneys0ORPHANET
umls:C1840451MULTICYSTIC RENAL DYSPLASIA, BILATERAL0ORPHANET
umls:C2677773Prostate Cancer, Hereditary, 110CTD_human
umls:C2931456Prostate cancer, familial0ORPHANET
umls:C3281138CHROMOSOME 17q12 DELETION SYNDROME0ORPHANET