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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for BUB1
check button Gene summary
Basic gene informationGene symbolBUB1
Gene nameBUB1 mitotic checkpoint serine/threonine kinase
SynonymsBUB1A|BUB1L|hBUB1
CytomapUCSC genome browser: 2q14
Type of geneprotein-coding
RefGenesNM_001278616.1,
NM_001278617.1,NM_004336.4,
DescriptionBUB1 budding uninhibited by benzimidazoles 1 homologbudding uninhibited by benzimidazoles 1 homologmitotic checkpoint serine/threonine-protein kinase BUB1mitotic spindle checkpoint kinaseputative serine/threonine-protein kinase
Modification date20141207
dbXrefs MIM : 602452
HGNC : HGNC
Ensembl : ENSG00000169679
HPRD : 03907
Vega : OTTHUMG00000153638
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_BUB1
BioGPS: 699
PathwayNCI Pathway Interaction Database: BUB1
KEGG: BUB1
REACTOME: BUB1
Pathway Commons: BUB1
ContextiHOP: BUB1
ligand binding site mutation search in PubMed: BUB1
UCL Cancer Institute: BUB1
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Testis
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)TGCT
Reference showing the relevant tissue of BUB1
Description by TissGene annotationsCancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0007063regulation of sister chromatid cohesion15723797
GO:0071173spindle assembly checkpoint15020684
GO:0007063regulation of sister chromatid cohesion15723797
GO:0071173spindle assembly checkpoint15020684


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TissGeneExp for BUB1

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KIRC-0.797914883-3.9706746053.1727597224.21E-308.00E-29
KICH-1.353179883-4.1587278832.8055481.75E-077.68E-07
STAD1.965703867-0.9875961332.95333.68E-077.46E-06
KIRP-1.025986758-4.5093836333.4833968752.37E-123.64E-11
LUAD1.174511841-1.5577916072.7323034481.25E-223.55E-21
HNSC2.0315833730.2038345361.8277488371.80E-103.48E-09
COAD2.1979947320.7069908861.4910038463.32E-093.32E-08
LUSC2.286022862-1.4309653733.7169882352.04E-352.87E-33
PRAD-1.752951421-3.1063110371.3533596152.84E-072.31E-06
LIHC-0.392077883-4.2740438833.8819668.41E-251.56E-22
BRCA1.372086433-2.2356530413.6077394745.33E-551.09E-52
THCA-1.580258527-3.3580805611.7778220342.49E-071.03E-06
ESCA2.358105572-1.5584853373.9165909095.86E-050.002183895
BLCA2.390070643-0.9627925153.3528631585.44E-060.000119788


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TissGene-miRNA for BUB1

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for BUB1
TissGeneSNV for BUB1

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.E536*UCEC2
p.K279ELGG2
p.R657CSKCM2
p.R820*LUAD1
p.P364STHYM1
p.D952HBRCA1
p.S459PKICH1
p.K299ELGG1
p.S752FSKCM1
p.K299TSTAD1
p.I197MREAD1
p.E23QLUAD1
p.V863LSTAD1
p.M933IBLCA1
p.S647LSKCM1
p.Q816*KIRP1
p.R677CUCEC1
p.T392KUCEC1
p.M428VBLCA1
p.A337VSTAD1
p.R585HSTAD1
p.S174*BLCA1
p.E746QBLCA1
p.K824TLUSC1
p.S203*LUAD1
p.T785ILIHC1
p.S667LSTAD1
p.C641FLUSC1
p.L678VBLCA1
p.Q505ECESC1
p.K61NSKCM1
p.A630EUCEC1
p.E535KLUAD1
p.S230PSKCM1
p.S491TLGG1
p.H649DHNSC1
p.T552IUCEC1
p.S667LREAD1
p.D890YBLCA1
p.E573KSKCM1
p.E701*LGG1
p.G195ABLCA1
p.H915RUCEC1
p.R1062CLUAD1
p.E394KHNSC1
p.G554RSTAD1
p.A696VLUAD1
p.R146HCOAD1
p.P805TPAAD1
p.F38LCESC1
p.Q325EBLCA1
p.F575VBLCA1
p.N534SOV1
p.V626ALUAD1
p.P542SSKCM1
p.L1073IESCA1
p.C698YGBM1
p.F971CUCEC1
p.E36DSTAD1
p.V362FSTAD1
p.E43QLUAD1
p.Q871*HNSC1
p.L147FLUSC1
p.L658VBLCA1
p.L820VHNSC1
p.H1023YSKCM1
p.M472ICESC1
p.S582CBLCA1
p.H131PSKCM1
p.Q803*SKCM1
p.L882FLGG1
p.I707SSTAD1
p.V201MPAAD1
p.P355TCOAD1
p.P339HSKCM1
p.P828SSKCM1
p.K945NLUAD1
p.Q345EBLCA1
p.R677CCESC1
p.E50KCOAD1
p.Q302PBLCA1
p.E548KBLCA1
p.A13VLUAD1
p.P808SSKCM1
p.R317GUCEC1
p.P957SSKCM1
p.H1023QBLCA1
p.P562SSKCM1
p.E414KHNSC1
p.D45NHNSC1
p.F818VUCEC1
p.H63YSKCM1
p.S156LSKCM1
p.S223*LUAD1
p.G583ADLBC1
p.P825TPAAD1
p.S437YUCEC1
p.R244CUCEC1
p.V221MPAAD1
p.S647LSTAD1
p.Q985KLUSC1
p.E233*BLCA1
p.L122ISTAD1
p.Q456RBLCA1
p.A317VPRAD1
p.E690DSTAD1
p.M1015TMESO1
p.K41NSKCM1
p.L800VHNSC1
p.Q282PBLCA1
p.E129KBLCA1
p.R137TESCA1
p.G175ABLCA1
p.I1074MSTAD1
p.K965NLUAD1
p.A358VLAML1
p.F923LUCEC1
p.E775KSKCM1
p.A183TUCEC1
p.R677CSKCM1
p.H1043QBLCA1
p.Q796*KIRP1
p.P937SSKCM1
p.S732FSKCM1
p.R157TESCA1
p.F75CREAD1
p.E553KSKCM1
p.Q398HBLCA1
p.D987NCOAD1
p.P438QPRAD1


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TissGeneCNV for BUB1

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for BUB1

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNAAU119852BUB1-RGS2chr2:111430434chr1:192780565
Chimerdb3.0ChiTaRsNABG403632BUB1-BUB1chr2:111395628chr2:111395409


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TissGeneNet for BUB1

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
BUB1, TP53, PLK1, HDAC3, HDAC1, CDK1, DSN1, NUF2, NDC80, BUB1B, ZWINT, AP1B1, RDH12, SIRT5, SPC24, BUB3, RAE1, CDC20, AP2B1, SPC25, CASC5 (tumor)BUB1, PLK1, HDAC1, PIN1, CDK1, DSN1, NUF2, NDC80, BUB1B, ZWINT, RDH12, SIRT5, EIF4EBP1, SPC24, UBR5, BUB3, RAE1, CDC20, ZW10, SPC25, CASC5 (normal)
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COAD (tumor)COAD (normal)
BUB1, TP53, PLK1, SVIL, HDAC1, CDK1, DSN1, NUF2, NDC80, BUB1B, ARIH2, ZWINT, SPC24, BUB3, RAE1, CDC20, AP2B1, ZW10, SPC25, AP3B1, CASC5 (tumor)BUB1, PLK1, HDAC3, SVIL, HDAC1, CDK1, DSN1, NUF2, NDC80, BUB1B, ZWINT, NSL1, EIF4EBP1, SPC24, BUB3, CDC20, MIS12, AP2B1, ZW10, SPC25, CASC5 (normal)
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HNSC (tumor)HNSC (normal)
BUB1, TP53, PLK1, HDAC1, CDK1, DSN1, NUF2, NDC80, BUB1B, ZWINT, AP1B1, RDH12, SPC24, NDEL1, BUB3, RAE1, CDC20, ZW10, SPC25, AP3B1, CASC5 (tumor)BUB1, APC, PLK1, CDK1, DSN1, NUF2, NDC80, BUB1B, ZWINT, RDH12, NSL1, SPC24, UBR5, NDEL1, BUB3, CDC20, MIS12, AP2B1, ZW10, SPC25, CASC5 (normal)
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KICH (tumor)KICH (normal)
BUB1, TP53, APC, PLK1, HDAC3, SVIL, PIN1, CDK1, NUF2, NDC80, BUB1B, ARIH2, PMF1, SIRT5, SPC24, NDEL1, RAE1, CDC20, AP2B1, SPC25, AP4B1 (tumor)BUB1, TP53, APC, PLK1, HDAC3, HDAC1, CDK1, NUF2, NDC80, BUB1B, CRK, ZWINT, SIRT5, EIF4EBP1, SPC24, UBR5, CDC20, ZW10, SPC25, AP3B1, CASC5 (normal)
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KIRC (tumor)KIRC (normal)
BUB1, TP53, PLK1, SVIL, CDK1, DSN1, NUF2, NDC80, BUB1B, ARIH2, ZWINT, PMF1, SIRT5, EIF4EBP1, SPC24, BUB3, CDC20, MIS12, ZW10, SPC25, AP4B1 (tumor)BUB1, PLK1, HDAC3, PIN1, CDK1, DSN1, NUF2, NDC80, BUB1B, CRK, ZWINT, PMF1, SIRT5, SPC24, UBR5, BUB3, RAE1, CDC20, ZW10, SPC25, CASC5 (normal)
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KIRP (tumor)KIRP (normal)
BUB1, TP53, PLK1, SVIL, PIN1, CDK1, NUF2, NDC80, BUB1B, ARIH2, NSL1, PMF1, SIRT5, SPC24, NDEL1, BUB3, CDC20, AP2B1, ZW10, SPC25, AP4B1 (tumor)BUB1, PLK1, HDAC3, CDK1, DSN1, NUF2, NDC80, BUB1B, ARIH2, ZWINT, NSL1, SIRT5, SPC24, UBR5, BUB3, RAE1, CDC20, MIS12, ZW10, SPC25, CASC5 (normal)
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LIHC (tumor)LIHC (normal)
BUB1, APC, PLK1, HDAC1, CDK1, DSN1, NUF2, NDC80, BUB1B, ZWINT, NSL1, EIF4EBP1, UBR5, BUB3, CDC20, MIS12, AP2B1, SPC25, AP3B1, AP4B1, CASC5 (tumor)BUB1, PLK1, HDAC1, CDK1, DSN1, NUF2, NDC80, BUB1B, ARIH2, ZWINT, SIRT5, SPC24, UBR5, NDEL1, BUB3, RAE1, CDC20, ZW10, SPC25, AP3B1, CASC5 (normal)
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LUAD (tumor)LUAD (normal)
BUB1, TP53, APC, PLK1, HDAC3, HDAC1, CDK1, NUF2, NDC80, BUB1B, ZWINT, AP1B1, RDH12, PMF1, EIF4EBP1, NDEL1, BUB3, RAE1, CDC20, SPC25, CASC5 (tumor)BUB1, TP53, APC, PLK1, HDAC1, CDK1, DSN1, NUF2, NDC80, BUB1B, ZWINT, PMF1, EIF4EBP1, SPC24, UBR5, BUB3, RAE1, CDC20, ZW10, SPC25, CASC5 (normal)
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LUSC (tumor)LUSC (normal)
BUB1, TP53, PLK1, HDAC3, HDAC1, CDK1, DSN1, NUF2, NDC80, BUB1B, CRK, ZWINT, NSL1, EIF4EBP1, SPC24, NDEL1, BUB3, CDC20, SPC25, AP3B1, CASC5 (tumor)BUB1, PLK1, CDK1, DSN1, NUF2, NDC80, BUB1B, ZWINT, NSL1, PMF1, SIRT5, SPC24, NDEL1, BUB3, RAE1, CDC20, MIS12, AP2B1, ZW10, SPC25, CASC5 (normal)
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PRAD (tumor)PRAD (normal)
BUB1, TP53, APC, PLK1, HDAC3, PIN1, NUF2, BUB1B, CRK, ZWINT, NSL1, EIF4EBP1, SPC24, BUB3, RAE1, CDC20, MIS12, AP2B1, SPC25, AP3B1, CASC5 (tumor)BUB1, PLK1, SVIL, PIN1, CDK1, DSN1, NUF2, NDC80, BUB1B, ZWINT, AP1B1, NSL1, PMF1, SPC24, UBR5, NDEL1, BUB3, CDC20, ZW10, SPC25, CASC5 (normal)
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STAD (tumor)STAD (normal)
BUB1, TP53, PLK1, SVIL, HDAC1, CDK1, DSN1, NUF2, NDC80, BUB1B, ARIH2, ZWINT, AP1B1, RDH12, EIF4EBP1, SPC24, CDC20, SPC25, AP3B1, AP4B1, CASC5 (tumor)BUB1, PLK1, SVIL, HDAC1, PIN1, CDK1, DSN1, NUF2, NDC80, BUB1B, ZWINT, EIF4EBP1, SPC24, UBR5, BUB3, RAE1, CDC20, AP2B1, ZW10, SPC25, CASC5 (normal)
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THCA (tumor)THCA (normal)
BUB1, TP53, PLK1, SVIL, CDK1, DSN1, NUF2, NDC80, BUB1B, ARIH2, ZWINT, AP1B1, SIRT5, EIF4EBP1, SPC24, BUB3, CDC20, AP2B1, SPC25, AP3B1, CASC5 (tumor)BUB1, PLK1, SVIL, HDAC1, CDK1, DSN1, NUF2, NDC80, BUB1B, ARIH2, ZWINT, SIRT5, EIF4EBP1, SPC24, NDEL1, BUB3, CDC20, ZW10, SPC25, AP4B1, CASC5 (normal)
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TissGeneProg for BUB1

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for BUB1
TissGeneDrug for BUB1

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for BUB1

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0596263Carcinogenesis9BeFree
umls:C1527249Colorectal Cancer9BeFree
umls:C0027126Myotonic Dystrophy7BeFree
umls:C0410226Congenital Myotonic Dystrophy7BeFree
umls:C0006142Malignant neoplasm of breast5BeFree,GAD
umls:C0678222Breast Carcinoma5BeFree
umls:C0009402Colorectal Carcinoma4BeFree
umls:C0023418leukemia4BeFree,LHGDN
umls:C0699791Stomach Carcinoma4BeFree
umls:C0009404Colorectal Neoplasms3BeFree,LHGDN
umls:C0024623Malignant neoplasm of stomach3BeFree
umls:C0027627Neoplasm Metastasis3BeFree
umls:C0001418Adenocarcinoma2BeFree
umls:C0017636Glioblastoma2BeFree
umls:C0023467Leukemia, Myelocytic, Acute2BeFree,LHGDN
umls:C0178874Tumor Progression2BeFree
umls:C0242379Malignant neoplasm of lung2BeFree
umls:C0549473Thyroid carcinoma2BeFree
umls:C0598766Leukemogenesis2BeFree
umls:C0684249Carcinoma of lung2BeFree
umls:C0699790Colon Carcinoma2BeFree,CLINVAR
umls:C1140680Malignant neoplasm of ovary2BeFree,GAD
umls:C0001973Alcoholic Intoxication, Chronic1GAD
umls:C0004763Barrett Esophagus1LHGDN
umls:C0005695Bladder Neoplasm1BeFree
umls:C0007102Malignant tumor of colon1BeFree
umls:C0007115Malignant neoplasm of thyroid1BeFree
umls:C0007131Non-Small Cell Lung Carcinoma1BeFree
umls:C0011849Diabetes Mellitus1BeFree
umls:C0017661IGA Glomerulonephritis1CTD_human
umls:C0023448Lymphoid leukemia1BeFree
umls:C0023449Acute lymphocytic leukemia1BeFree
umls:C0023493Adult T-Cell Lymphoma/Leukemia1BeFree
umls:C0024121Lung Neoplasms1BeFree
umls:C0024299Lymphoma1BeFree,LHGDN
umls:C0026764Multiple Myeloma1BeFree
umls:C0029925Ovarian Carcinoma1BeFree
umls:C0030297Pancreatic Neoplasm1LHGDN
umls:C0031269Peutz-Jeghers Syndrome1BeFree
umls:C0040136Thyroid Neoplasm1LHGDN
umls:C0206708Cervical Intraepithelial Neoplasia1BeFree
umls:C0235974Pancreatic carcinoma1BeFree
umls:C0280100Solid tumour1BeFree
umls:C0334588Giant Cell Glioblastoma1BeFree
umls:C0346647Malignant neoplasm of pancreas1BeFree
umls:C0376358Malignant neoplasm of prostate1BeFree
umls:C0474808Follicular neoplasm1BeFree
umls:C0600139Prostate carcinoma1BeFree
umls:C0686619Secondary malignant neoplasm of lymph node1BeFree
umls:C1168401Squamous cell carcinoma of the head and neck1BeFree
umls:C1261473Sarcoma1BeFree
umls:C1335177Ovarian Serous Adenocarcinoma1BeFree
umls:C1654637androgen independent prostate cancer1BeFree
umls:C1961102Precursor Cell Lymphoblastic Leukemia Lymphoma1BeFree
umls:C2239176Liver carcinoma1BeFree
umls:C1850343MOSAIC VARIEGATED ANEUPLOIDY SYNDROME0ORPHANET