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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for TYR
check button Gene summary
Basic gene informationGene symbolTYR
Gene nametyrosinase
SynonymsATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3
CytomapUCSC genome browser: 11q14.3
Type of geneprotein-coding
RefGenesNM_000372.4,
DescriptionLB24-ABSK29-ABmonophenol monooxygenaseoculocutaneous albinism IAtumor rejection antigen AB
Modification date20141219
dbXrefs MIM : 606933
HGNC : HGNC
Ensembl : ENSG00000077498
HPRD : 06086
Vega : OTTHUMG00000167294
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_TYR
BioGPS: 7299
PathwayNCI Pathway Interaction Database: TYR
KEGG: TYR
REACTOME: TYR
Pathway Commons: TYR
ContextiHOP: TYR
ligand binding site mutation search in PubMed: TYR
UCL Cancer Institute: TYR
Assigned class in TissGDB*A
Included tissue-specific gene expression resourcesHPA,TiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Skin
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)SKCM
Reference showing the relevant tissue of TYRLong term presence of a single predominant tyrosinase-specific T-cell clone associated with disease control in a patient with metastatic melanoma. Int J Cancer. 2010 May 15;126(10):2497-502. doi: 10.1002/ijc.24939. (pmid:19816942)
go to article
Description by TissGene annotationsFused withOncogene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for TYR

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
HNSC-1.0134011340.597438401-1.6108395350.001320.004310595


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TissGene-miRNA for TYR

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for TYR
TissGeneSNV for TYR

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.M362ISTAD2
p.K243NBLCA1
p.R501CSKCM1
p.L495HLUAD1
p.G51DBRCA1
p.N382KESCA1
p.S267TSTAD1
p.R121IBRCA1
p.L388ISTAD1
p.I145VUCEC1
p.F269VUCEC1
p.D197YUCEC1
p.F95LSTAD1
p.L138FHNSC1
p.R77QCOAD1
p.R405HCHOL1
p.Q56*LUSC1
p.F338VESCA1
p.R299CESCA1
p.G190RLUAD1
p.P301SSKCM1
p.G51SLIHC1
p.G41RLUAD1
p.G254RHNSC1
p.L387FSKCM1
p.C321YCOAD1
p.Q48*BLCA1
p.V83IDLBC1
p.G154ESARC1
p.P508SSKCM1
p.Y156CGBM1
p.F134CREAD1
p.E319DSTAD1
p.L387FBRCA1
p.G353VLUAD1
p.R434TBLCA1
p.A490PLUAD1
p.F268LUCEC1
p.R299HLUAD1
p.R212ILGG1
p.E219QLIHC1
p.L59FSKCM1
p.W11RLUAD1
p.T88IBLCA1
p.N300TSKCM1
p.D454NLUAD1
p.A204TLUSC1
p.P110QLUAD1
p.P152SDLBC1
p.L3QLIHC1
p.E130ALGG1
p.P417HSTAD1
p.P301LSKCM1
p.V410ISKCM1
p.D174NLUSC1
p.P70SSKCM1
p.R402*LUSC1
p.R405HPAAD1
p.L59HLUAD1
p.R422LLUAD1
p.A63TLUSC1
p.G254SLUSC1
p.S277ITHYM1
p.R278PHNSC1
p.T144IBLCA1
p.R402QCESC1
p.D169NUCEC1
p.P38LBLCA1
p.N261TLUAD1
p.C289*LUAD1
p.R239QPRAD1
p.S360NBLCA1
p.D125NUCEC1
p.S267*LUAD1
p.S287ALUAD1
p.G66ECESC1
p.Q223KLUAD1
p.W39*SKCM1
p.M252ILUSC1
p.G51SLUSC1
p.L3MLUAD1
p.V410DSKCM1
p.137_138YL>*FHNSC1
p.D448VUCEC1
p.W272LHNSC1
p.P457TLUSC1
p.T139PUCEC1
p.A490VUCEC1
p.C276FLUAD1
p.D317AOV1
p.Q56HLUAD1
p.D245NBLCA1
p.T325AUCS1
p.G494VESCA1
p.S192YBRCA1
p.V83IPRAD1
p.F269VSTAD1
p.Y85CSTAD1
p.F386LLUAD1
p.C89FLUAD1
p.E319*UCEC1
p.W238*SKCM1
p.L30PLIHC1
p.Q223KHNSC1
p.T489ILIHC1
p.W80LLUAD1
p.K28NSARC1
p.M179LSTAD1
p.Q376ELGG1
p.P257HLUAD1
p.F320VPAAD1
p.L445MUCEC1
p.N259IUCEC1
p.D249YBLCA1
p.A481PLIHC1
p.S476*LUAD1
p.P38LLGG1
p.L452ILUAD1
p.E130KBLCA1
p.Y173NSKCM1
p.A416VBRCA1
p.R341IPAAD1
p.C91FLUSC1
p.G302EBLCA1
p.V487FREAD1
p.R299CSTAD1
p.Q470HSTAD1
p.C321*LUAD1
p.Y137*HNSC1
p.D237EBRCA1
p.P350LSKCM1
p.R298QPAAD1
p.R402QCOAD1
p.D240YLUAD1
p.R434THNSC1
p.S40RBRCA1
p.P293LBLCA1
p.A493SLUAD1


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TissGeneCNV for TYR

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for TYR

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0FusionScanBRCATCGA-AC-A2BK-01AABTB2-TYROut-of-Framechr11:34378247chr11:89017940
Chimerdb3.0FusionScanBRCATCGA-AC-A2BK-01AABTB2-TYRIn-Framechr11:34378247chr11:89028310
Chimerdb3.0FusionScanUVMTCGA-VD-AA8T-01ATYR-SETIn-Framechr11:88924586chr9:131453448
TCGAfusionPortalPRADALGGTCGA-FG-5963-01ASLC4A7-TYRIn-frameChr3:27525558Chr11:88924370
TCGAfusionPortalPRADASKCMTCGA-EB-A57M-01ATYR-MMP20In-frameChr11:88924586Chr11:102480761


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TissGeneNet for TYR

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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COAD (tumor)COAD (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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HNSC (tumor)HNSC (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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KICH (tumor)KICH (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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KIRC (tumor)KIRC (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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KIRP (tumor)KIRP (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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LIHC (tumor)LIHC (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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LUAD (tumor)LUAD (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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LUSC (tumor)LUSC (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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PRAD (tumor)PRAD (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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STAD (tumor)STAD (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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THCA (tumor)THCA (normal)
TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (tumor)TYR, CTNNB1, USF1, SYVN1, MITF, TYRP1 (normal)
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TissGeneProg for TYR

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for TYR
TissGeneDrug for TYR

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status
DB00548Azelaic AcidInhibitorSmall moleculeApproved
DB00600MonobenzoneInhibitorSmall moleculeApproved
DB01055MimosineInhibitorSmall moleculeApproved
DB09526HydroquinoneInhibitorSmall moleculeApproved


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TissGeneDisease for TYR

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0025202melanoma218BeFree,CTD_human,GAD,GWASCAT,LHGDN
umls:C0078918Albinism, Oculocutaneous81BeFree,CTD_human,GAD,LHGDN,RGD
umls:C0268494Oculocutaneous albinism type 158BeFree,CLINVAR,CTD_human,MGD,ORPHANET,UNIPROT
umls:C0001916Albinism42BeFree
umls:C0027627Neoplasm Metastasis23BeFree,GAD
umls:C0278883Metastatic melanoma22BeFree
umls:C0042900Vitiligo13BeFree,GAD,GWASCAT,LHGDN
umls:C0206735Melanoma, Amelanotic13BeFree,LHGDN
umls:C1847835VITILIGO-ASSOCIATED MULTIPLE AUTOIMMUNE DISEASE SUSCEPTIBILITY 1 (finding)12BeFree
umls:C0026010Microphthalmos11BeFree
umls:C0162835Hypopigmentation disorder11BeFree
umls:C0151779Cutaneous Melanoma9BeFree
umls:C0220633Uveal melanoma8BeFree
umls:C0004565Melanoma, B167BeFree
umls:C0268495Oculocutaneous albinism type 27BeFree
umls:C1876214ALBINOIDISM, OCULOCUTANEOUS, AUTOSOMAL DOMINANT7BeFree
umls:C0268503Autosomal recessive ocular albinism6BeFree
umls:C0078917Albinism, Ocular5BeFree,GAD,LHGDN
umls:C0178874Tumor Progression5BeFree
umls:C0677944Sentinel node (disorder)5BeFree
umls:C0036341Schizophrenia4BeFree
umls:C1847024ALBINISM, OCULOCUTANEOUS, TYPE IB (disorder)4BeFree,CLINVAR,CTD_human,MGD,ORPHANET,UNIPROT
umls:C0037286Skin Neoplasms3CTD_human,GAD
umls:C0376358Malignant neoplasm of prostate3BeFree,GAD
umls:C0677932Progressive Neoplastic Disease3BeFree
umls:C3539781Progressive cGVHD3BeFree
umls:C3811653Experimental Organism Basal Cell Carcinoma3BeFree
umls:C0002793Anaplasia2BeFree
umls:C0005586Bipolar Disorder2BeFree
umls:C0006118Brain Neoplasms2BeFree
umls:C0007114Malignant neoplasm of skin2BeFree
umls:C0007117Basal cell carcinoma2CTD_human,GAD,LHGDN
umls:C0015230Exanthema2BeFree
umls:C0017636Glioblastoma2BeFree
umls:C0023418leukemia2BeFree
umls:C0027809Neurilemmoma2BeFree
umls:C0029925Ovarian Carcinoma2BeFree
umls:C0042170Uveomeningoencephalitic Syndrome2BeFree
umls:C0079504Hermanski-Pudlak Syndrome2BeFree,GAD
umls:C0278881stage II melanoma2BeFree
umls:C0600139Prostate carcinoma2BeFree
umls:C0686619Secondary malignant neoplasm of lymph node2BeFree
umls:C0848332Spots on skin2BeFree
umls:C0860594Malignant melanoma, metastatic2BeFree
umls:C1533041Primary congenital glaucoma2BeFree
umls:C0000768Congenital Abnormality1BeFree
umls:C0004135Ataxia Telangiectasia1LHGDN
umls:C0004352Autistic Disorder1GAD,MGD
umls:C0004364Autoimmune Diseases1GAD
umls:C0004936Mental disorders1BeFree
umls:C0005684Malignant neoplasm of urinary bladder1GAD
umls:C0007131Non-Small Cell Lung Carcinoma1BeFree
umls:C0007137Squamous cell carcinoma1BeFree,GAD
umls:C0007965Chediak-Higashi Syndrome1BeFree
umls:C0008073Developmental Disabilities1BeFree
umls:C0008626Congenital chromosomal disease1BeFree
umls:C0010674Cystic Fibrosis1BeFree
umls:C0016629Fowlpox1BeFree
umls:C0016689Freckles1GAD,GWASCAT
umls:C0017638Glioma1BeFree
umls:C0019348Herpes Simplex Infections1BeFree
umls:C0019880Homocystinuria1BeFree
umls:C0020302Hydrophthalmos1BeFree
umls:C0021400Influenza1BeFree
umls:C0022078Iris Diseases1BeFree
umls:C0022602Actinic keratosis1BeFree
umls:C0022603Seborrheic keratosis1BeFree
umls:C0023470Myeloid Leukemia1BeFree
umls:C0023474Leukemia, Myeloid, Chronic-Phase1BeFree
umls:C0023492Leukemia, T-Cell1BeFree
umls:C0023493Adult T-Cell Lymphoma/Leukemia1BeFree
umls:C0023520Leukodystrophy1BeFree
umls:C0024117Chronic Obstructive Airway Disease1GAD
umls:C0024141Lupus Erythematosus, Systemic1BeFree
umls:C0024305Lymphoma, Non-Hodgkin1GAD
umls:C0026769Multiple Sclerosis1GAD
umls:C0027819Neuroblastoma1BeFree
umls:C0027960Nevus1BeFree
umls:C0027962Melanocytic nevus1BeFree
umls:C0030567Parkinson Disease1LHGDN
umls:C0032897Prader-Willi Syndrome1BeFree
umls:C0033860Psoriasis1BeFree
umls:C0033975Psychotic Disorders1BeFree
umls:C0035335Retinoblastoma1BeFree
umls:C0035369Retroviridae Infections1BeFree
umls:C0036651Senile lentigo1BeFree
umls:C0037354Smallpox1BeFree
umls:C0038814Sunburn1GWASCAT
umls:C0040517Gilles de la Tourette syndrome1BeFree
umls:C0041341Tuberous Sclerosis1BeFree
umls:C0078921Albinism, Tyrosinase-Negative1BeFree
umls:C0085648Synovial Cyst1BeFree
umls:C0153594Malignant neoplasm of testis1BeFree
umls:C0153690Secondary malignant neoplasm of bone1BeFree
umls:C0162674Chronic progressive external ophthalmoplegia1BeFree
umls:C0242379Malignant neoplasm of lung1GAD
umls:C0242596Neoplasm, Residual1BeFree
umls:C0242994Hantavirus Infections1BeFree
umls:C0333516Tumor necrosis1BeFree
umls:C0334439Malignant desmoplastic melanoma1BeFree
umls:C0342552Autoimmune endocrine disease1BeFree
umls:C0346977Secondary malignant neoplasm of spleen1BeFree
umls:C0349204Nonorganic psychosis1BeFree
umls:C0349515Amelanotic Skin Melanoma1BeFree
umls:C0525045Mood Disorders1BeFree
umls:C0555198Malignant Glioma1BeFree
umls:C0677886Epithelial ovarian cancer1BeFree
umls:C0699790Colon Carcinoma1BeFree
umls:C0700095Central neuroblastoma1BeFree
umls:C0751202Cystathionine beta-Synthase Deficiency Disease1BeFree
umls:C1140680Malignant neoplasm of ovary1BeFree
umls:C1258666Myxoid cyst1BeFree
umls:C1261473Sarcoma1BeFree
umls:C1269684Skin pigmentation - finding1GAD,GWASCAT
umls:C1298180Single tumor1BeFree
umls:C1321872Stage IV Skin Melanoma1BeFree
umls:C1456781Benign melanocytic nevus1BeFree
umls:C1511789Desmoplastic1BeFree
umls:C1527390Neoplasms, Intracranial1BeFree
umls:C1568247Usher Syndrome, Type I1BeFree
umls:C1840264IMMUNE SUPPRESSION1BeFree
umls:C2931205Usher syndrome, type 1A1BeFree
umls:C2931599Oculocutaneous albinism type 31BeFree
umls:C3266898Waardenburg Syndrome1BeFree
umls:C3665346Unspecified visual loss1BeFree
umls:C3665593Melanocytic nevus of skin1BeFree
umls:C1845069ALBINISM, OCULAR, WITH LATE-ONSET SENSORINEURAL DEAFNESS (disorder)0CTD_human
umls:C1847132ALBINISM, OCULOCUTANEOUS, TYPE I, TEMPERATURE-SENSITIVE0CLINVAR
umls:C1856439GLAUCOMA 3, PRIMARY CONGENITAL, A0MGD
umls:C1863198ALBINISM, OCULAR, WITH SENSORINEURAL DEAFNESS (disorder)0ORPHANET
umls:C2677190SKIN/HAIR/EYE PIGMENTATION, VARIATION IN, 3 (disorder)0CLINVAR
umls:C3152204MELANOMA, CUTANEOUS MALIGNANT, SUSCEPTIBILITY TO, 80CLINVAR