TissGeneSummary for ZNF165 |
Gene summary |
Basic gene information | Gene symbol | ZNF165 |
Gene name | zinc finger protein 165 | |
Synonyms | CT53|LD65|ZSCAN7 | |
Cytomap | UCSC genome browser: 6p21.3 | |
Type of gene | protein-coding | |
RefGenes | NM_003447.3, | |
Description | cancer/testis antigen 53zinc finger and SCAN domain-containing protein 7 | |
Modification date | 20141207 | |
dbXrefs | MIM : 600834 | |
HGNC : HGNC | ||
Ensembl : ENSG00000197279 | ||
HPRD : 02903 | ||
Vega : OTTHUMG00000014505 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_ZNF165 | |
BioGPS: 7718 | ||
Pathway | NCI Pathway Interaction Database: ZNF165 | |
KEGG: ZNF165 | ||
REACTOME: ZNF165 | ||
Pathway Commons: ZNF165 | ||
Context | iHOP: ZNF165 | |
ligand binding site mutation search in PubMed: ZNF165 | ||
UCL Cancer Institute: ZNF165 | ||
Assigned class in TissGDB* | C | |
Included tissue-specific gene expression resources | TiGER,GTEx | |
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | Testis | |
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | TGCT | |
Reference showing the relevant tissue of ZNF165 | ||
Description by TissGene annotations | TissgsLTS |
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO term | PubMed ID |
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TissGeneExp for ZNF165 |
Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
KIRP | -1.434788906 | -0.174667031 | -1.260121875 | 8.03E-11 | 9.43E-10 |
KIRC | -1.508650364 | -0.325483697 | -1.183166667 | 1.80E-21 | 1.57E-20 |
KICH | 0.918884969 | -0.123655031 | 1.04254 | 0.00114 | 0.002444125 |
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TissGene-miRNA for ZNF165 |
Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
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TissGeneMut for ZNF165 |
TissGeneSNV for ZNF165 |
nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
- nsSNVs sorted by frequency. |
AAchange | Cancer type | # samples |
p.S325P | LGG | 1 |
p.E240K | SKCM | 1 |
p.H418R | OV | 1 |
p.R364T | HNSC | 1 |
p.W303C | HNSC | 1 |
p.E111V | KIRC | 1 |
p.E65K | SKCM | 1 |
p.E17* | BLCA | 1 |
p.E111* | LUAD | 1 |
p.E376K | BLCA | 1 |
p.K257R | STAD | 1 |
p.G378E | BLCA | 1 |
p.Q50R | LGG | 1 |
p.L443H | LIHC | 1 |
p.N375Y | SKCM | 1 |
p.D341N | LUSC | 1 |
p.R206I | UCEC | 1 |
p.M193I | UCEC | 1 |
p.N375S | SKCM | 1 |
p.T122I | COAD | 1 |
p.A230V | STAD | 1 |
p.Y456N | STAD | 1 |
p.E26X | COAD | 1 |
p.E197K | SKCM | 1 |
p.E369D | BRCA | 1 |
p.E376K | LUAD | 1 |
p.I477L | PRAD | 1 |
p.T122N | CHOL | 1 |
p.P61A | CESC | 1 |
p.E376D | STAD | 1 |
p.Q345H | LUSC | 1 |
p.E186Q | BLCA | 1 |
p.R391W | COAD | 1 |
p.D386H | UCEC | 1 |
p.L484I | SKCM | 1 |
p.K318T | SKCM | 1 |
p.E218K | SKCM | 1 |
p.Q164E | KIRC | 1 |
p.S60C | CESC | 1 |
p.S60P | GBM | 1 |
p.E429K | SKCM | 1 |
p.R445L | LUAD | 1 |
p.R392* | LUAD | 1 |
p.S175L | SKCM | 1 |
p.S248L | UCEC | 1 |
p.R246I | UCEC | 1 |
p.S459I | STAD | 1 |
p.D273N | STAD | 1 |
p.L331V | LUAD | 1 |
p.S385L | BLCA | 1 |
p.E125D | UCEC | 1 |
p.R129S | STAD | 1 |
p.R392Q | LUAD | 1 |
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TissGeneCNV for ZNF165 |
Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
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TissGeneFusions for ZNF165 |
Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
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TissGeneNet for ZNF165 |
Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
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TissGeneProg for ZNF165 |
Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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TissGeneClin for ZNF165 |
TissGeneDrug for ZNF165 |
Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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TissGeneDisease for ZNF165 |
Disease information associated with TissGene (DisGeNet, 2016-06-01) |
Disease ID | Disease name | # pubmeds | Source |
umls:C0005684 | Malignant neoplasm of urinary bladder | 1 | BeFree |
umls:C0007138 | Carcinoma, Transitional Cell | 1 | BeFree |
umls:C0279680 | Transitional cell carcinoma of bladder | 1 | BeFree |
umls:C0699885 | Carcinoma of bladder | 1 | BeFree |
umls:C1704272 | Benign Prostatic Hyperplasia | 1 | BeFree |