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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for MOGAT2
check button Gene summary
Basic gene informationGene symbolMOGAT2
Gene namemonoacylglycerol O-acyltransferase 2
SynonymsDGAT2L5|MGAT2
CytomapUCSC genome browser: 11q13.5
Type of geneprotein-coding
RefGenesNM_025098.2,
Description2-acylglycerol O-acyltransferase 2acyl CoA:monoacylglycerol acyltransferase 2acyl-CoA:monoacylglycerol acyltransferase 2diacylglycerol O-acyltransferase candidate 5diacylglycerol acyltransferase 2-like protein 5hDC5hMGAT2
Modification date20141207
dbXrefs MIM : 610270
HGNC : HGNC
HPRD : 11367
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_MOGAT2
BioGPS: 80168
PathwayNCI Pathway Interaction Database: MOGAT2
KEGG: MOGAT2
REACTOME: MOGAT2
Pathway Commons: MOGAT2
ContextiHOP: MOGAT2
ligand binding site mutation search in PubMed: MOGAT2
UCL Cancer Institute: MOGAT2
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)LiverStomach
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)LIHCSTAD
Reference showing the relevant tissue of MOGAT2
Description by TissGene annotations
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for MOGAT2

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LIHC2.704134026.55492802-3.8507945.20E-128.92E-11
COAD3.2635829436.812371405-3.5487884629.86E-098.71E-08
KIRP-2.2958346050.811596645-3.107431254.36E-115.43E-10
KICH-2.49561198-0.17456398-2.3210485.36E-082.58E-07
KIRC-2.1832800910.313528243-2.4968083333.74E-172.25E-16


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TissGene-miRNA for MOGAT2

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for MOGAT2
TissGeneSNV for MOGAT2

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.D153YUCEC2
p.H138YSKCM1
p.P6LSKCM1
p.D230YSTAD1
p.E229VPAAD1
p.S225FSKCM1
p.R136CUCS1
p.G178RUCEC1
p.A105VSTAD1
p.H330QLUSC1
p.A54VCOAD1
p.L98MESCA1
p.E311VPAAD1
p.P109NLUAD1
p.E14QLUAD1
p.E299KSKCM1
p.Y82CUCEC1
p.P236LSKCM1
p.I53FLUAD1
p.R65LLUAD1
p.R61QSKCM1
p.T35IDLBC1
p.G45SSKCM1
p.F199SUCEC1
p.N232KPRAD1
p.P27HLUAD1
p.S116FSKCM1
p.G34RBLCA1
p.H110NSTAD1
p.R249WSTAD1
p.I256MCESC1
p.S159FHNSC1
p.R196QSKCM1
p.H70LLUSC1
p.E298KBLCA1
p.R278QSKCM1
p.R19WSKCM1
p.F224LKIRC1
p.R54CUCS1
p.W80RBLCA1
p.G116RBLCA1
p.A5VLUAD1
p.P27TLUAD1
p.P236SSKCM1
p.F323LLUSC1
p.A194TOV1
p.G52SSTAD1
p.E96QLUAD1
p.A54EKIRP1
p.M83ILUAD1
p.S143FSKCM1
p.H56YSKCM1
p.R13CKIRP1
p.P154SSKCM1
p.I192KSARC1
p.K252NUCS1
p.G134SSTAD1
p.P10LUCEC1
p.G116VLUAD1
p.E216KBLCA1
p.R204WHNSC1
p.Y21*PRAD1
p.G34VLUAD1
p.R122WHNSC1
p.E217KSKCM1
p.P6TOV1
p.R277HUCEC1
p.R307CUCEC1
p.K170NUCS1
p.G127SSKCM1
p.G263DCOAD1
p.P154LSKCM1
p.R195CPRAD1


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TissGeneCNV for MOGAT2

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for MOGAT2

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP
Chimerdb3.0ChiTaRsNAAW810166DPP8-MOGAT2chr15:65801624chr11:75439181
Chimerdb3.0TopHat-FusionBRCATCGA-A1-A0SQ-01ALRP5-MOGAT2In-Framechr11:68193654chr11:75431036
TCGAfusionPortalPRADABRCATCGA-A1-A0SQ-01ALRP5-MOGAT2In-frameChr11:68193655Chr11:75431037
TCGAfusionPortalPRADABRCATCGA-AN-A03Y-01AARAP1-MOGAT2Out-of-frameChr11:72410050Chr11:75431037


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TissGeneNet for MOGAT2

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)


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TissGeneProg for MOGAT2

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for MOGAT2
TissGeneDrug for MOGAT2

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for MOGAT2

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0028754Obesity4BeFree
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent1BeFree
umls:C0015695Fatty Liver1BeFree
umls:C0025517Metabolic Diseases1BeFree
umls:C0271650Impaired glucose tolerance1BeFree
umls:C0282577Congenital Disorders of Glycosylation1BeFree
umls:C2711227Steatohepatitis1BeFree