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| TissGeneSummary for KRTAP1-5 |
 Gene summary |
| Basic gene information | Gene symbol | KRTAP1-5 |
| Gene name | keratin associated protein 1-5 | |
| Synonyms | KAP1.5|KRTAP1.5 | |
| Cytomap | UCSC genome browser: 17q21.2 | |
| Type of gene | protein-coding | |
| RefGenes | NM_031957.1, | |
| Description | high sulfur keratin-associated protein 1.5keratin associated protein 1.5keratin-associated protein 1-5keratin-associated protein 1.5 | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 608822 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000221852 | ||
| HPRD : 12306 | ||
| Vega : OTTHUMG00000133587 | ||
| Protein | UniProt: go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_KRTAP1-5 | |
| BioGPS: 83895 | ||
| Pathway | NCI Pathway Interaction Database: KRTAP1-5 | |
| KEGG: KRTAP1-5 | ||
| REACTOME: KRTAP1-5 | ||
| Pathway Commons: KRTAP1-5 | ||
| Context | iHOP: KRTAP1-5 | |
| ligand binding site mutation search in PubMed: KRTAP1-5 | ||
| UCL Cancer Institute: KRTAP1-5 | ||
| Assigned class in TissGDB* | C | |
| Included tissue-specific gene expression resources | HPA,GTEx | |
| Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | CervixSkinUterus | |
| Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | CESCSKCMUCEC,UCS | |
| Reference showing the relevant tissue of KRTAP1-5 | ||
| Description by TissGene annotations | ||
| * Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO term | PubMed ID |
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| TissGeneExp for KRTAP1-5 |
| Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
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| Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
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| Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
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| Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
| - Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
| Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
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| TissGene-miRNA for KRTAP1-5 |
| Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
| Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
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| TissGeneMut for KRTAP1-5 |
| TissGeneSNV for KRTAP1-5 |
| nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
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| Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
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| - nsSNVs sorted by frequency. |
| AAchange | Cancer type | # samples |
| p.I88T | PAAD | 15 |
| p.I88T | HNSC | 11 |
| p.I88T | LGG | 10 |
| p.I88T | LUAD | 10 |
| p.I88T | BLCA | 8 |
| p.I88T | PRAD | 7 |
| p.I88T | THCA | 7 |
| p.I88T | PCPG | 4 |
| p.I88T | STAD | 4 |
| p.I88T | UVM | 4 |
| p.I88T | SKCM | 3 |
| p.I88T | KIRP | 2 |
| p.S64R | STAD | 1 |
| p.G96V | LIHC | 1 |
| p.S39R | PRAD | 1 |
| p.S28R | SARC | 1 |
| p.I88T | KIRC | 1 |
| p.R120H | STAD | 1 |
| p.S58Y | SKCM | 1 |
| p.T139M | LUAD | 1 |
| p.G54E | BLCA | 1 |
| p.S64C | COAD | 1 |
| p.L146V | BRCA | 1 |
| p.V112M | BRCA | 1 |
| p.C138F | LUAD | 1 |
| p.G96C | LIHC | 1 |
| p.C66S | LUAD | 1 |
| p.S109G | KIRP | 1 |
| p.P131T | ESCA | 1 |
| p.S89N | SKCM | 1 |
| p.G92R | PCPG | 1 |
| p.Q82R | COAD | 1 |
| p.G54W | LUAD | 1 |
| p.G92R | BLCA | 1 |
| p.E31Q | BLCA | 1 |
| p.P12R | LUAD | 1 |
| p.I88T | MESO | 1 |
| p.I88T | LUSC | 1 |
| p.I88T | UCEC | 1 |
| p.Q145K | STAD | 1 |
| p.S162P | SKCM | 1 |
| p.I116V | KIRP | 1 |
| p.G107S | LGG | 1 |
| p.T42A | ESCA | 1 |
| p.C30Y | LUAD | 1 |
| Top |
| TissGeneCNV for KRTAP1-5 |
| Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
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| TissGeneFusions for KRTAP1-5 |
| Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
| Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
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| TissGeneNet for KRTAP1-5 |
| Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
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| TissGeneProg for KRTAP1-5 |
| Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
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| Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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| Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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| Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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| TissGeneClin for KRTAP1-5 |
| TissGeneDrug for KRTAP1-5 |
| Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
| DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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| TissGeneDisease for KRTAP1-5 |
| Disease information associated with TissGene (DisGeNet, 2016-06-01) |
| Disease ID | Disease name | # pubmeds | Source |
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