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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for NR0B2
check button Gene summary
Basic gene informationGene symbolNR0B2
Gene namenuclear receptor subfamily 0, group B, member 2
SynonymsSHP|SHP1
CytomapUCSC genome browser: 1p36.1
Type of geneprotein-coding
RefGenesNM_021969.2,
Descriptionnuclear receptor SHPnuclear receptor subfamily 0 group B member 2orphan nuclear receptor SHPsmall heterodimer partner
Modification date20141207
dbXrefs MIM : 604630
HGNC : HGNC
Ensembl : ENSG00000131910
HPRD : 05219
Vega : OTTHUMG00000004231
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_NR0B2
BioGPS: 8431
PathwayNCI Pathway Interaction Database: NR0B2
KEGG: NR0B2
REACTOME: NR0B2
Pathway Commons: NR0B2
ContextiHOP: NR0B2
ligand binding site mutation search in PubMed: NR0B2
UCL Cancer Institute: NR0B2
Assigned class in TissGDB*C
Included tissue-specific gene expression resources
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Liver
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)LIHC
Reference showing the relevant tissue of NR0B2
Description by TissGene annotationsCancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID
GO:0043433negative regulation of sequence-specific DNA binding transcription factor activity14752053
GO:0043433negative regulation of sequence-specific DNA binding transcription factor activity14752053


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TissGeneExp for NR0B2

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
LIHC7.9866210259.767013025-1.7803921.22E-066.42E-06
KIRC-0.857660425.942422913-6.8000833337.11E-474.83E-45
LUAD1.8536400594.809905576-2.9562655174.30E-123.16E-11
LUSC-0.3135350934.616615887-4.930150986.93E-282.23E-26
KIRP-0.413925356.282365275-6.6962906252.46E-191.35E-17
KICH8.0209590256.5949710251.4259880.006490.012142581
COAD3.4600167171.6886782551.7713384620.0001570.000544283


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TissGene-miRNA for NR0B2

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for NR0B2
TissGeneSNV for NR0B2

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.L218VLIHC1
p.P228LSTAD1
p.L98ILIHC1
p.L98FUCEC1
p.A210SPCPG1
p.R38HLUAD1
p.H53DBRCA1
p.E165KSKCM1
p.V67MLUSC1
p.G7ESKCM1
p.L218FBLCA1
p.A31TLIHC1
p.E204KSKCM1
p.R36CBLCA1
p.P80SLUAD1
p.W197*LUAD1
p.P35SHNSC1
p.P46LSKCM1
p.R85WUCEC1
p.R86WGBM1
p.Q150*SKCM1
p.D234NSKCM1
p.G189RSKCM1
p.P239SSKCM1
p.R45WESCA1
p.A64SLIHC1
p.A68TSTAD1
p.R216HBRCA1
p.F107LSKCM1
p.R238HSTAD1


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TissGeneCNV for NR0B2

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for NR0B2

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP


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TissGeneNet for NR0B2

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
NR0B2, NR1H3, PLSCR1, RARA, HDAC6, EID1, NR5A2, RXRG, IL3RA, ESRRA, VDR, GDF1, PPARG, SREBF1, ESR2, RNF31, NR1H4, SP2, ESRRG, SIRT6, ZMYND10 (tumor)NR0B2, SIRT7, NR1H3, HNF4A, ONECUT1, MDM2, SMARCA2, HDAC6, FN1, HDAC1, EID1, NR5A2, RXRG, PPARD, RUNX2, USF1, VDR, GDF1, CHRD, NR1H4, RBP5 (normal)
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COAD (tumor)COAD (normal)
NR0B2, NR1H3, NCOA3, TRAF6, PLSCR1, ESR1, RARA, HDAC6, TCF3, AR, NR5A2, NR1I2, IL3RA, ESRRA, SIRT1, HNF1A, VDR, SNW1, NR1I3, HNF4G, ESRRG (tumor)NR0B2, NR1H3, HNF4A, THRA, MDM2, SMARCA2, ESR1, POLR2A, PAX9, AR, NR5A2, NR1I2, RUNX2, ESRRA, HNF1A, VDR, SIN3A, ESR2, RNF31, ZMYND10, RBP5 (normal)
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HNSC (tumor)HNSC (normal)
NR0B2, TP53, NR1H3, NCOA3, HNF4A, HDAC3, RARA, TCF3, EID1, EHMT2, RXRG, SMARCB1, PEF1, VDR, GDF1, SREBF1, SMARCC1, GPS2, NR1I3, ESRRG, ZMYND10 (tumor)NR0B2, SIRT7, NCOA3, ZAP70, HNF4A, ONECUT1, RXRB, POLR2A, HDAC1, RXRA, NR1I2, RUNX2, USF1, HNF1A, SMARCE1, VDR, RARG, GDF1, KLF6, XBP1, NR1H4 (normal)
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KICH (tumor)KICH (normal)
NR0B2, TP53, ZAP70, TRAF6, THRA, PLSCR1, RARA, FN1, EID1, NR5A2, RUNX2, ESRRA, USF1, GDF1, PPARG, CHRD, NR1H2, SMARCC1, GPS2, NR1I3, ESRRG (tumor)NR0B2, NCOA3, TRAF6, UBC, ONECUT1, PLSCR1, HDAC3, TCF3, POLR2A, FN1, HDAC1, HNRNPA1, PAX9, EHMT2, RUNX2, ESRRA, RARG, GDF1, SP2, ESRRG, RBP5 (normal)
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KIRC (tumor)KIRC (normal)
NR0B2, ZAP70, TRAF6, THRA, RXRB, SMARCA2, FN1, HDAC1, EID1, AR, SMARCB1, PPARD, IL3RA, RUNX2, ESRRA, PEF1, PPARG, GPS2, NR1H4, SP2, ESRRG (tumor)NR0B2, TP53, ZAP70, HNF4A, RARA, HDAC1, EHMT2, NR5A2, IL3RA, RUNX2, ESRRA, DDX20, HNF1A, VDR, RARG, PPARG, CHRD, NR1H4, HNF4G, ESRRG, RBP5 (normal)
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KIRP (tumor)KIRP (normal)
NR0B2, TP53, NCOA3, ZAP70, TRAF6, RXRB, PLSCR1, FN1, HNRNPA1, AR, SMAD4, RUNX2, ESRRA, SIRT1, SMARCE1, PEF1, SIN3A, SNW1, NR1H2, GPS2, SP2 (tumor)NR0B2, TP53, SIRT7, HNF4A, TRAF6, RARA, HDAC6, TCF3, RXRA, PAX9, EHMT2, AR, NR5A2, SMARCB1, IL3RA, HNF1A, XBP1, GPS2, HNF4G, ESRRG, ZMYND10 (normal)
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LIHC (tumor)LIHC (normal)
NR0B2, SIRT7, TRAF6, RXRB, PLSCR1, HDAC3, RARA, TCF3, RXRA, EHMT2, SMAD4, NR5A2, NR1I2, ESRRA, HNF1A, VDR, SIN3A, PPARG, XBP1, NR1H2, SP2 (tumor)NR0B2, NR1H3, HNF4A, THRA, ONECUT1, TCF3, NR5A2, NR1I2, ESRRA, DDX20, HNF1A, SIN3A, RARG, SREBF1, XBP1, ESR2, SNW1, NR1H4, NR1I3, HNF4G, RBP5 (normal)
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LUAD (tumor)LUAD (normal)
NR0B2, NR1H3, NCOA3, ZAP70, ONECUT1, RXRB, HDAC3, SMARCA2, AR, SMAD4, RUNX2, ESRRA, DDX20, PEF1, SIN3A, PPARG, CHRD, XBP1, SNW1, NR1H2, SIRT6 (tumor)NR0B2, NCOA3, HNF4A, THRA, UBC, FN1, NR5A2, RXRG, PPARD, NR1I2, SIRT1, DDX20, HNF1A, RARG, CHRD, XBP1, SNW1, NR1H4, HNF4G, ESRRG, RBP5 (normal)
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LUSC (tumor)LUSC (normal)
NR0B2, TP53, NCOA3, UBC, RXRB, SMARCA2, ESR1, POLR2A, FN1, HNRNPA1, AR, NR1I2, RUNX2, ESRRA, PEF1, SIN3A, KLF6, NR1H2, SMARCC1, GPS2, HNF4G (tumor)NR0B2, NR1H3, ZAP70, HNF4A, THRA, RXRB, RARA, TCF3, RXRA, NR5A2, RXRG, IL3RA, SIRT1, HNF1A, RARG, CHRD, KLF6, XBP1, NR1H4, ZMYND10, RBP5 (normal)
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PRAD (tumor)PRAD (normal)
NR0B2, NR1H3, UBC, RXRB, PLSCR1, RARA, HDAC6, RXRA, PAX9, EID1, SMAD4, RUNX2, ESRRA, USF1, VDR, RARG, SREBF1, RNF31, SMARCC1, NR1I3, ESRRG (tumor)NR0B2, SIRT7, ZAP70, THRA, RXRB, ESR1, RARA, EHMT2, AR, PPARD, IL3RA, RUNX2, USF1, PEF1, RARG, SREBF1, ESR2, NR1H2, SMARCC1, GPS2, RBP5 (normal)
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STAD (tumor)STAD (normal)
NR0B2, NR1H3, ZAP70, HNF4A, SMARCA2, FN1, HDAC1, PAX9, AR, SMARCB1, NR1I2, ESRRA, USF1, HNF1A, PPARG, XBP1, NR1H4, HNF4G, ESRRG, SIRT6, RBP5 (tumor)NR0B2, TP53, SIRT7, HNF4A, THRA, ONECUT1, HDAC3, POLR2A, FN1, NR5A2, NR1I2, RUNX2, ESRRA, HNF1A, SIN3A, PPARG, XBP1, SMARCC1, NR1H4, HNF4G, ESRRG (normal)
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THCA (tumor)THCA (normal)
NR0B2, NR1H3, NCOA3, THRA, MDM2, POLR2A, EHMT2, AR, SMARCB1, ESRRA, SIRT1, DDX20, PEF1, VDR, RARG, KLF6, NR1H2, SMARCC1, GPS2, NR1I3, SIRT6 (tumor)NR0B2, ZAP70, HNF4A, THRA, PLSCR1, RARA, FN1, HNRNPA1, EHMT2, SMAD4, RXRG, PPARD, RUNX2, ESRRA, PEF1, SIN3A, RARG, SMARCC1, GPS2, NR1I3, ZMYND10 (normal)
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TissGeneProg for NR0B2

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for NR0B2
TissGeneDrug for NR0B2

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for NR0B2

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C2239176Liver carcinoma13BeFree,CTD_human
umls:C0011849Diabetes Mellitus9BeFree,RGD
umls:C0028754Obesity9BeFree,CTD_human,GAD
umls:C0006142Malignant neoplasm of breast8BeFree
umls:C0011847Diabetes8BeFree
umls:C0024299Lymphoma8BeFree
umls:C0678222Breast Carcinoma8BeFree
umls:C0023418leukemia6BeFree
umls:C0023473Myeloid Leukemia, Chronic6BeFree
umls:C0023467Leukemia, Myelocytic, Acute4BeFree
umls:C0023903Liver neoplasms4BeFree
umls:C0026769Multiple Sclerosis4BeFree
umls:C0699791Stomach Carcinoma4BeFree
umls:C0007131Non-Small Cell Lung Carcinoma3BeFree
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent3BeFree,GAD
umls:C0023794Lipoidosis3CTD_human
umls:C0024623Malignant neoplasm of stomach3BeFree
umls:C0025517Metabolic Diseases3BeFree
umls:C0026764Multiple Myeloma3BeFree
umls:C0149925Small cell carcinoma of lung3BeFree
umls:C0239946Fibrosis, Liver3BeFree
umls:C0600139Prostate carcinoma3BeFree
umls:C0004096Asthma2BeFree
umls:C0007102Malignant tumor of colon2BeFree
umls:C0009402Colorectal Carcinoma2BeFree
umls:C0019163Hepatitis B2BeFree,LHGDN
umls:C0022116Ischemia2BeFree
umls:C0023449Acute lymphocytic leukemia2BeFree
umls:C0023487Acute Promyelocytic Leukemia2BeFree
umls:C0023890Liver Cirrhosis2BeFree,GAD
umls:C0026269Mitral Valve Stenosis2BeFree
umls:C0027022Myeloproliferative disease2BeFree
umls:C0027627Neoplasm Metastasis2BeFree
umls:C0036920Sezary Syndrome2BeFree
umls:C0037274Dermatologic disorders2BeFree
umls:C0079731B-Cell Lymphomas2BeFree
umls:C0079772T-Cell Lymphoma2BeFree
umls:C0178874Tumor Progression2BeFree
umls:C0206180Ki-1+ Anaplastic Large Cell Lymphoma2BeFree,LHGDN
umls:C0376358Malignant neoplasm of prostate2BeFree
umls:C0596263Carcinogenesis2BeFree
umls:C0699790Colon Carcinoma2BeFree
umls:C1290884Inflammatory disorder2BeFree
umls:C1292778Chronic myeloproliferative disorder2BeFree
umls:C1368683Epithelioma2BeFree
umls:C1527249Colorectal Cancer2BeFree
umls:C2931822Nasopharyngeal carcinoma2BeFree
umls:C0004114Astrocytoma1BeFree
umls:C0006413Burkitt Lymphoma1BeFree
umls:C0007137Squamous cell carcinoma1BeFree
umls:C0007222Cardiovascular Diseases1BeFree
umls:C0008370Cholestasis1BeFree
umls:C0008372Intrahepatic Cholestasis1RGD
umls:C0009319Colitis1BeFree
umls:C0009324Ulcerative Colitis1BeFree
umls:C0010346Crohn Disease1BeFree
umls:C0011615Dermatitis, Atopic1BeFree
umls:C0011881Diabetic Nephropathy1BeFree
umls:C0013595Eczema1BeFree
umls:C0013884Filarial Elephantiases1BeFree
umls:C0014175Endometriosis1BeFree
umls:C0017152Gastritis1BeFree
umls:C0017638Glioma1BeFree
umls:C0018799Heart Diseases1BeFree
umls:C0019209Hepatomegaly1BeFree
umls:C0019621Histiocytosis, Langerhans-Cell1BeFree
umls:C0019693HIV Infections1BeFree
umls:C0020459Hyperinsulinism1BeFree
umls:C0023281Leishmaniasis1BeFree
umls:C0023434Chronic Lymphocytic Leukemia1BeFree
umls:C0023452Leukemia, Lymphocytic, Acute, L11BeFree
umls:C0023492Leukemia, T-Cell1BeFree
umls:C0023787Lipodystrophy1BeFree,LHGDN
umls:C0023893Liver Cirrhosis, Experimental1CTD_human
umls:C0023895Liver diseases1BeFree
umls:C0024121Lung Neoplasms1BeFree
umls:C0024141Lupus Erythematosus, Systemic1BeFree
umls:C0024291Lymphohistiocytosis, Hemophagocytic1BeFree
umls:C0024301Lymphoma, Follicular1BeFree
umls:C0026848Myopathy1BeFree
umls:C0026936Mycoplasma Infections1BeFree
umls:C0027121Myositis1BeFree
umls:C0028756Obesity, Morbid1GAD
umls:C0029463Osteosarcoma1BeFree
umls:C0032463Polycythemia Vera1BeFree
umls:C0033578Prostatic Neoplasms1BeFree
umls:C0033860Psoriasis1BeFree
umls:C0036220Kaposi Sarcoma1BeFree
umls:C0036341Schizophrenia1BeFree
umls:C0038356Stomach Neoplasms1LHGDN
umls:C0042769Virus Diseases1BeFree
umls:C0079744Diffuse Large B-Cell Lymphoma1BeFree
umls:C0079773Lymphoma, T-Cell, Cutaneous1BeFree
umls:C0149678Epstein-Barr Virus Infections1BeFree
umls:C0221013Mastocytosis, Systemic1BeFree
umls:C0242647Mucosa-Associated Lymphoid Tissue Lymphoma1BeFree
umls:C0262584Carcinoma, Small Cell1BeFree
umls:C0278504Non-small cell lung cancer stage I1BeFree
umls:C0334287Fibrolamellar hepatocellular carcinoma1BeFree
umls:C0340970Congenital neutropenia1BeFree
umls:C0341439Chronic liver disease1BeFree
umls:C0349639Juvenile Myelomonocytic Leukemia1BeFree
umls:C0400966Non-alcoholic Fatty Liver Disease1BeFree
umls:C0524620Metabolic Syndrome X1BeFree
umls:C0549463X-Linked Lymphoproliferative Disorder1BeFree
umls:C0585442Osteosarcoma of bone1BeFree
umls:C0598766Leukemogenesis1BeFree
umls:C0600452Hepatopulmonary Syndrome1GAD
umls:C0694533Moderate obesity1BeFree
umls:C0856536Philadelphia chromosome positive1BeFree
umls:C0858252Breast adenocarcinoma1BeFree
umls:C0940937precancerous lesions1BeFree
umls:C0947751Vascular inflammations1BeFree
umls:C1142272Neutrophilic dermatosis1BeFree
umls:C1292753Primary Effusion Lymphoma1BeFree
umls:C1512326Human T-cell lymphotropic virus 1 infection1BeFree
umls:C1623038Cirrhosis1BeFree
umls:C1853118Severe congenital neutropenia1BeFree
umls:C1961102Precursor Cell Lymphoblastic Leukemia Lymphoma1BeFree
umls:C2004493Leukemia, B-Cell1BeFree
umls:C3241937Nonalcoholic Steatohepatitis1BeFree
umls:C3249881Infection - suppurative1BeFree
umls:C3714619Insulin resistance syndrome1BeFree