TissGeneSummary for C1orf158 |
Gene summary |
Basic gene information | Gene symbol | C1orf158 |
Gene name | chromosome 1 open reading frame 158 | |
Synonyms | - | |
Cytomap | UCSC genome browser: 1p36.21 | |
Type of gene | protein-coding | |
RefGenes | NM_152290.3, | |
Description | uncharacterized protein C1orf158 | |
Modification date | 20141207 | |
dbXrefs | HGNC : HGNC | |
HPRD : 14604 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_C1orf158 | |
BioGPS: 93190 | ||
Pathway | NCI Pathway Interaction Database: C1orf158 | |
KEGG: C1orf158 | ||
REACTOME: C1orf158 | ||
Pathway Commons: C1orf158 | ||
Context | iHOP: C1orf158 | |
ligand binding site mutation search in PubMed: C1orf158 | ||
UCL Cancer Institute: C1orf158 | ||
Assigned class in TissGDB* | C | |
Included tissue-specific gene expression resources | TiGER,GTEx | |
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx) | Testis | |
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA) | TGCT | |
Reference showing the relevant tissue of C1orf158 | ||
Description by TissGene annotations |
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO term | PubMed ID |
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TissGeneExp for C1orf158 |
Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01) |
Gene expressions across normal tissues of GTEx data (GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct) - Here, we shows the matched tissue types only among our 28 cancer types. |
Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1)) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) |
- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05) |
Cancer type | Mean(exp) in tumor | Mean(exp) in matched normal | Log2FC | P-val. | FDR |
LUAD | -0.421680681 | 2.393031388 | -2.814712069 | 1.12E-09 | 5.88E-09 |
LUSC | -1.270761851 | 2.289724424 | -3.560486275 | 5.30E-14 | 2.83E-13 |
THCA | -1.664075742 | 0.869820868 | -2.53389661 | 5.71E-17 | 1.04E-15 |
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TissGene-miRNA for C1orf158 |
Significantly anti-correlated miRNAs of TissGene across 28 cancer types (Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016) (TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21) (TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16) (Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25)) |
Cancer type | miRNA id | miRNA accession | P-val. | Coeff. | # samples |
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TissGeneMut for C1orf158 |
TissGeneSNV for C1orf158 |
nsSNV counts per each loci. Different colors of circles represent different cancer types. Circle size denotes number of samples. (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) * Click on the image to enlarge it in a new window. |
Somatic nucleotide variants of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of mutated samples) The numbers in parentheses are numbers of samples with mutation (nsSNVs). (TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25) |
- nsSNVs sorted by frequency. |
AAchange | Cancer type | # samples |
p.R92C | SKCM | 3 |
p.G141E | SKCM | 2 |
p.S164L | SKCM | 2 |
p.R187L | LIHC | 1 |
p.R115P | OV | 1 |
p.V26M | LGG | 1 |
p.Q47R | COAD | 1 |
p.R115H | COAD | 1 |
p.R72K | SKCM | 1 |
p.P10T | LUAD | 1 |
p.F2C | ESCA | 1 |
p.S96N | PAAD | 1 |
p.P58S | SKCM | 1 |
p.R187H | LGG | 1 |
p.R115C | HNSC | 1 |
p.A173T | LIHC | 1 |
p.Y162S | UCEC | 1 |
p.Y54H | LGG | 1 |
p.P109S | BLCA | 1 |
p.G110V | LUAD | 1 |
p.D41Y | UCEC | 1 |
p.F57L | ACC | 1 |
p.H101Y | SKCM | 1 |
p.I95M | BLCA | 1 |
p.S23P | STAD | 1 |
p.P78L | SKCM | 1 |
p.P185L | STAD | 1 |
p.E127Q | HNSC | 1 |
p.D100N | SKCM | 1 |
p.C172F | LUAD | 1 |
p.R149K | SKCM | 1 |
p.K80Q | SKCM | 1 |
p.S66F | SKCM | 1 |
p.P8L | SKCM | 1 |
p.Q150H | SARC | 1 |
p.W117* | BLCA | 1 |
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TissGeneCNV for C1orf158 |
Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples) (TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16) |
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TissGeneFusions for C1orf158 |
Fusion genes including TissGene (ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01) |
Database | Src | Cancer type | Sample | Fusion gene | ORF | 5'-gene BP | 3'-gene BP |
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TissGeneNet for C1orf158 |
Co-expressed gene networks based on protein-protein interaction data (CePIN) (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (PINA2 ppi data) |
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TissGeneProg for C1orf158 |
Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image to enlarge it in a new window. |
Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types (TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16) (TCGA clinicalMatrix, phenotype data, version 2016-04-27) * Click on the image enlarge it in a new window. |
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TissGeneClin for C1orf158 |
TissGeneDrug for C1orf158 |
Drug information targeting TissGene (DrugBank Version 5.0.6, 2017-04-01) |
DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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TissGeneDisease for C1orf158 |
Disease information associated with TissGene (DisGeNet, 2016-06-01) |
Disease ID | Disease name | # pubmeds | Source |