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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for KL
check button Gene summary
Basic gene informationGene symbolKL
Gene nameklotho
Synonyms-
CytomapUCSC genome browser: 13q12
Type of geneprotein-coding
RefGenesNM_004795.3,
NM_153683.2,
Description-
Modification date20141222
dbXrefs MIM : 604824
HGNC : HGNC
Ensembl : ENSG00000133116
HPRD : 05316
Vega : OTTHUMG00000017408
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_KL
BioGPS: 9365
PathwayNCI Pathway Interaction Database: KL
KEGG: KL
REACTOME: KL
Pathway Commons: KL
ContextiHOP: KL
ligand binding site mutation search in PubMed: KL
UCL Cancer Institute: KL
Assigned class in TissGDB*C
Included tissue-specific gene expression resourcesTiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)Kidney
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)KIRC,KIRP,KICH
Reference showing the relevant tissue of KL
Description by TissGene annotationsCancer gene
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for KL

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
STAD-0.6811155920.770240658-1.451356257.85E-069.44E-05
COAD-1.6325403510.331401956-1.9639423081.28E-078.85E-07
BRCA-0.8819925111.792075033-2.6740675446.91E-504.45E-48
LUSC-1.2585553592.453099543-3.7116549029.71E-293.53E-27
LUAD-0.4994835882.658992275-3.1584758621.66E-333.38E-31
KIRC4.8930972556.183445866-1.2903486116.56E-112.39E-10
THCA1.046084355-0.2707224241.316806782.01E-111.46E-10
KICH0.2784130335.400805033-5.1223927.08E-151.41E-13
ESCA-0.9209658762.068761397-2.9897272730.000640.010701955
BLCA-1.5412539140.338651349-1.8799052630.0006110.004734718
KIRP4.1860437836.254165658-2.0681218750.000280.000873102


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TissGene-miRNA for KL

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for KL
TissGeneSNV for KL

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.P520SSKCM4
p.S471IUCEC2
p.S916LSKCM2
p.P867LSKCM2
p.G362ESKCM2
p.Q229RPRAD1
p.H275YHNSC1
p.F133LHNSC1
p.A268VPAAD1
p.T538SBRCA1
p.E414KSKCM1
p.G878ESKCM1
p.D310NSKCM1
p.L222FSKCM1
p.G228SSTAD1
p.Q743*SKCM1
p.V563ISKCM1
p.E625KSKCM1
p.F496LGBM1
p.P964QSTAD1
p.P338LSKCM1
p.S998CBRCA1
p.W638CLUAD1
p.R671*UCEC1
p.V830MKIRC1
p.R620CREAD1
p.F367VSTAD1
p.Y470HCOAD1
p.R1009KBLCA1
p.K424NBLCA1
p.V331LTHYM1
p.R781IREAD1
p.G325CSTAD1
p.I257MLUSC1
p.Q317EBLCA1
p.G926VHNSC1
p.E587KSKCM1
p.Q934*SKCM1
p.M461ISKCM1
p.R306QSKCM1
p.G206DSTAD1
p.I947SREAD1
p.R395SESCA1
p.S609FSKCM1
p.P604HUCEC1
p.R671*SKCM1
p.L813FSKCM1
p.Q378*SKCM1
p.G646RSKCM1
p.R210CSTAD1
p.D427NSARC1
p.F935ILUSC1
p.Y433CSTAD1
p.D426NUCEC1
p.G768RBRCA1
p.D103NLUSC1
p.H943QCOAD1
p.M941ISKCM1
p.E502KCESC1
p.E354KSTAD1
p.P338SSKCM1
p.A922TUCEC1
p.G526RSKCM1
p.R979*SKCM1
p.R252CSTAD1
p.R961TBRCA1
p.D135NSTAD1
p.R929HLGG1
p.Q610KPRAD1
p.V830EKIRC1
p.L489FLUAD1
p.T686MPAAD1
p.M431VSTAD1
p.F861SUCEC1
p.P923LLGG1
p.G449EMESO1
p.Q230HCOAD1
p.Q675*SKCM1
p.G724RSTAD1
p.L109VHNSC1
p.W711CSKCM1
p.A729VSKCM1
p.G463DSKCM1
p.P507SSKCM1
p.A721SUCEC1
p.A636TLUAD1
p.H193QHNSC1
p.K1006ISKCM1
p.P740HSKCM1
p.Q579KLUAD1
p.R174WSTAD1
p.R693KSKCM1
p.E819*SKCM1
p.D535HLUAD1
p.E829KSKCM1
p.V830ELUAD1
p.Q722HUCEC1
p.R594CCOAD1
p.R199CSTAD1
p.S312NUCEC1
p.R671QSKCM1
p.R979QUCEC1
p.E168DLUAD1
p.Q388*LIHC1
p.V450MSTAD1
p.T968PLUAD1
p.R395SLUAD1
p.A583TLGG1
p.P305SUCEC1
p.G247SLIHC1
p.P520LSKCM1
p.D919NCOAD1
p.R671XSKCM1
p.A652TBLCA1
p.R175GBLCA1
p.S319FUCEC1
p.Y930CCOAD1
p.R568KSKCM1
p.L785IUCEC1
p.F523LSKCM1
p.D535NSKCM1
p.R671QBLCA1
p.I615VBRCA1
p.L557PSKCM1
p.G911RTGCT1
p.S570FSKCM1
p.A670VKIRC1
p.K424NTHYM1
p.D820HLUSC1
p.V590IKIRC1
p.M431IESCA1
p.I947VLIHC1
p.Q378*LUAD1
p.E625KUCEC1
p.Y571CBRCA1
p.Q743XSKCM1
p.L616MCOAD1
p.P690SSKCM1
p.E716KSKCM1
p.D826YUCEC1
p.V164LKIRP1
p.P771SSKCM1
p.M687VUCEC1
p.G247SSTAD1
p.G646ESKCM1
p.L191VHNSC1
p.E793KSKCM1
p.E404KSKCM1
p.M384IBLCA1
p.E957KHNSC1
p.E440DCESC1
p.P97LSKCM1
p.D365NLUSC1


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TissGeneCNV for KL

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for KL

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP


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TissGeneNet for KL

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)
BRCA (tumor)BRCA (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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COAD (tumor)COAD (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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HNSC (tumor)HNSC (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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KICH (tumor)KICH (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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KIRC (tumor)KIRC (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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KIRP (tumor)KIRP (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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LIHC (tumor)LIHC (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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LUAD (tumor)LUAD (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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LUSC (tumor)LUSC (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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PRAD (tumor)PRAD (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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STAD (tumor)STAD (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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THCA (tumor)THCA (normal)
KL, IGF1R (tumor)KL, IGF1R (normal)
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TissGeneProg for KL

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for KL
TissGeneDrug for KL

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for KL

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C1561643Chronic Kidney Diseases19BeFree
umls:C0231341Premature aging syndrome15BeFree,CTD_human
umls:C0085681Hyperphosphatemia (disorder)12BeFree,CTD_human
umls:C0003850Arteriosclerosis11BeFree,CTD_human
umls:C0022661Kidney Failure, Chronic9BeFree,GAD,LHGDN,RGD
umls:C1956346Coronary Artery Disease9BeFree,CTD_human
umls:C0007222Cardiovascular Diseases7BeFree,GAD
umls:C0010054Coronary Arteriosclerosis7BeFree,GAD
umls:C0403447Chronic Kidney Insufficiency7BeFree,RGD
umls:C0004153Atherosclerosis6BeFree,GAD,LHGDN
umls:C0010068Coronary heart disease6BeFree
umls:C0006142Malignant neoplasm of breast5BeFree,GAD
umls:C0020538Hypertensive disease5BeFree,GAD,RGD
umls:C0029456Osteoporosis5BeFree,CTD_human
umls:C0678222Breast Carcinoma5BeFree
umls:C0856169Endothelial dysfunction5BeFree
umls:C0002895Anemia, Sickle Cell4BeFree
umls:C0006663Calcinosis4BeFree,CTD_human,GAD
umls:C0020437Hypercalcemia4BeFree,CTD_human,GAD
umls:C0021368Inflammation4GAD
umls:C0022116Ischemia4BeFree
umls:C0022660Kidney Failure, Acute4BeFree
umls:C0035078Kidney Failure4BeFree
umls:C0151526Premature Birth4GAD
umls:C0007847Malignant tumor of cervix3BeFree
umls:C0022658Kidney Diseases3BeFree,CTD_human
umls:C0029408Degenerative polyarthritis3BeFree,GAD,LHGDN
umls:C0029925Ovarian Carcinoma3BeFree
umls:C0032002Pituitary Diseases3BeFree
umls:C0034067Pulmonary Emphysema3BeFree
umls:C0151650Renal fibrosis3BeFree
umls:C0242379Malignant neoplasm of lung3BeFree
umls:C0302592Cervix carcinoma3BeFree
umls:C0596263Carcinogenesis3BeFree
umls:C0684249Carcinoma of lung3BeFree
umls:C0948008Ischemic stroke3BeFree,GAD
umls:C1140680Malignant neoplasm of ovary3BeFree
umls:C2239176Liver carcinoma3BeFree
umls:C3272363Ischemic Cerebrovascular Accident3BeFree
umls:C3536984Vitamin D-Resistant Rickets, X-Linked3BeFree
umls:C0001430Adenoma2BeFree
umls:C0003873Rheumatoid Arthritis2BeFree
umls:C0005940Bone Diseases2BeFree
umls:C0009402Colorectal Carcinoma2BeFree
umls:C0011847Diabetes2BeFree
umls:C0011849Diabetes Mellitus2BeFree
umls:C0011860Diabetes Mellitus, Non-Insulin-Dependent2BeFree,RGD
umls:C0011881Diabetic Nephropathy2BeFree,RGD
umls:C0019829Hodgkin Disease2BeFree
umls:C0020179Huntington Disease2BeFree
umls:C0020503Hyperparathyroidism, Secondary2BeFree,RGD
umls:C0027627Neoplasm Metastasis2BeFree
umls:C0028754Obesity2BeFree
umls:C0033117Priapism2BeFree,GAD
umls:C0037274Dermatologic disorders2CTD_human,GAD
umls:C0038454Cerebrovascular accident2GAD
umls:C0156259Hypertrophy of kidney2BeFree
umls:C0346647Malignant neoplasm of pancreas2BeFree
umls:C0376358Malignant neoplasm of prostate2BeFree
umls:C0524620Metabolic Syndrome X2BeFree,RGD
umls:C0524851Neurodegenerative Disorders2BeFree
umls:C0600139Prostate carcinoma2BeFree
umls:C0677886Epithelial ovarian cancer2BeFree
umls:C1458155Mammary Neoplasms2BeFree,LHGDN
umls:C1527249Colorectal Cancer2BeFree
umls:C1565489Renal Insufficiency2BeFree,RGD
umls:C2316810Chronic kidney disease stage 52BeFree
umls:C0001206Acromegaly1BeFree
umls:C0002395Alzheimer's Disease1BeFree
umls:C0002963Angina Pectoris, Variant1BeFree
umls:C0007102Malignant tumor of colon1BeFree
umls:C0007134Renal Cell Carcinoma1BeFree
umls:C0009241Cognition Disorders1BeFree
umls:C0009319Colitis1BeFree
umls:C0009782Connective Tissue Diseases1GAD
umls:C0011175Dehydration1BeFree
umls:C0013990Pathological accumulation of air in tissues1CTD_human
umls:C0015302External exotoses1BeFree
umls:C0015929Fetal Diseases1GAD
umls:C0020438Hypercalciuria1GAD
umls:C0020459Hyperinsulinism1BeFree
umls:C0020473Hyperlipidemia1RGD
umls:C0021359Infertility1CTD_human
umls:C0022650Kidney Calculi1BeFree
umls:C0023223Leg Ulcer1BeFree
umls:C0023467Leukemia, Myelocytic, Acute1BeFree
umls:C0023890Liver Cirrhosis1BeFree
umls:C0023903Liver neoplasms1BeFree
umls:C0025202melanoma1BeFree
umls:C0025517Metabolic Diseases1BeFree
umls:C0026769Multiple Sclerosis1BeFree
umls:C0026857Musculoskeletal Diseases1GAD
umls:C0027721Lipoid nephrosis1BeFree
umls:C0029445Bone necrosis1LHGDN
umls:C0030517Parathyroid Diseases1BeFree
umls:C0032964Pregnancy Complications, Hematologic1GAD
umls:C0033626Protein Deficiency1BeFree
umls:C0035334Retinitis Pigmentosa1RGD
umls:C0038019Spondylosis1BeFree
umls:C0040336Tobacco Use Disorder1GAD
umls:C0041956Ureteral obstruction1BeFree
umls:C0085413Polycystic Kidney, Autosomal Dominant1BeFree
umls:C0085580Essential Hypertension1BeFree
umls:C0149721Left Ventricular Hypertrophy1BeFree
umls:C0149925Small cell carcinoma of lung1BeFree
umls:C0149983Lumbar spondylosis1GAD
umls:C0151744Myocardial Ischemia1BeFree
umls:C0221002Hyperparathyroidism, Primary1BeFree,LHGDN
umls:C0233794Memory impairment1GAD
umls:C0235974Pancreatic carcinoma1BeFree
umls:C0235989Renal interstitial fibrosis1BeFree
umls:C0242231Coronary Stenosis1BeFree,GAD
umls:C0260662Hearing problem1BeFree
umls:C0262587Parathyroid Adenoma1BeFree
umls:C0263628Tumoral calcinosis1BeFree
umls:C0263746Osteoarthritis of the hand1BeFree
umls:C0281361Adenocarcinoma of pancreas1BeFree
umls:C0282201Phosphate Diabetes1BeFree
umls:C0334359Papillary serous cystadenocarcinoma1BeFree
umls:C0338656Impaired cognition1BeFree
umls:C0346302Growth Hormone-Secreting Pituitary Adenoma1BeFree
umls:C0409957Osteoarthritis of distal interphalangeal joint1BeFree
umls:C0409959Osteoarthritis, Knee1BeFree,GAD,LHGDN
umls:C0595916Toxic nephropathy1BeFree
umls:C0699790Colon Carcinoma1BeFree
umls:C0729233Dissecting aneurysm of the thoracic aorta1BeFree
umls:C0733682Hypophosphatemic Rickets, X-Linked Dominant1BeFree
umls:C0878544Cardiomyopathies1GAD
umls:C0920646Renal ischaemia1BeFree
umls:C0947751Vascular inflammations1BeFree
umls:C0948089Acute Coronary Syndrome1GAD
umls:C1260873Aortic valve disorder1BeFree
umls:C1265996Large cell neuroendocrine carcinoma1BeFree
umls:C1272641Systemic arterial pressure1GAD
umls:C1332347Atypical Ductal Breast Hyperplasia1BeFree
umls:C1334274Invasive Carcinoma1BeFree
umls:C1334363Large Cell Lung Neuroendocrine Carcinoma1BeFree
umls:C1335177Ovarian Serous Adenocarcinoma1BeFree
umls:C1442839Hypervitaminosis D1BeFree
umls:C1512409Hepatocarcinogenesis1BeFree
umls:C1704320Glomerulonephritis, Minimal Change1BeFree
umls:C1833683NEPHROLITHIASIS, CALCIUM OXALATE1BeFree
umls:C1876187TUMORAL CALCINOSIS, HYPERPHOSPHATEMIC, FAMILIAL1CTD_human,ORPHANET,UNIPROT
umls:C1956089Osteophyte1BeFree
umls:C1963167Memory Impairment Adverse Event1GAD
umls:C2242703Cardio-Renal Syndrome1BeFree
umls:C3540852Rickets, X-Linked Hypophosphatemic1BeFree
umls:C3714514Infection1GAD
umls:C1840169CORONARY ARTERY DISEASE, SUSCEPTIBILITY TO0CLINVAR
umls:C1851718Emphysema, Hereditary Pulmonary0MGD