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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory

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TissGeneSummary

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TissGeneExp

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TissGene-miRNA

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TissGeneMut: TissGeneSNV, TissGeneCNV, and TissGeneFusions

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TissGeneNet

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TissGeneProg

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TissGeneClin: TissGeneDrug and TissGeneDisease

TissGeneSummary for ECEL1
check button Gene summary
Basic gene informationGene symbolECEL1
Gene nameendothelin converting enzyme-like 1
SynonymsDA5D|DINE|ECEX|XCE
CytomapUCSC genome browser: 2q37.1
Type of geneprotein-coding
RefGenesNM_001290787.1,
NM_004826.3,
DescriptionX converting enzymedamage induced neuronal endopeptidaseendothelin-converting enzyme-like 1
Modification date20141222
dbXrefs MIM : 605896
HGNC : HGNC
Ensembl : ENSG00000171551
HPRD : 07066
Vega : OTTHUMG00000133262
ProteinUniProt:
go to UniProt's Cross Reference DB Table
ExpressionCleanEX: HS_ECEL1
BioGPS: 9427
PathwayNCI Pathway Interaction Database: ECEL1
KEGG: ECEL1
REACTOME: ECEL1
Pathway Commons: ECEL1
ContextiHOP: ECEL1
ligand binding site mutation search in PubMed: ECEL1
UCL Cancer Institute: ECEL1
Assigned class in TissGDB*B
Included tissue-specific gene expression resourcesHPA,TiGER,GTEx
Specific-tissues in normal samples (assigned by TissGDB using HPA, TiGER, and GTEx)OvaryEye
Cancer types related to the specific-tissues in cancer samples (assigned by TissGDB using TCGA)OVUVM
Reference showing the relevant tissue of ECEL1
Description by TissGene annotationsProtective TissGene in RFS
* Class A consists of genes with literature evidence and is part of the cTissGenes. Class B consists of only cTissGenes without additional evidence. The remaining genes belong to Class C.

check button Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez
GO IDGO termPubMed ID


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TissGeneExp for ECEL1

check button Gene expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
gene exp


check button Gene isoform expressions across 28 cancer types (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA pan-cancer tcga_rsem_isoform_tpm, version 2016-09-01)
gene isoform exp


check button Gene expressions across normal tissues of GTEx data
(GTEx GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_rpkm.gct)
- Here, we shows the matched tissue types only among our 28 cancer types.
normal gene exp


check button Different expressions across 14 cancer types with more than 10 samples between matched tumors and normals (X-axis: cancer type and Y-axis: log2(norm_counts+1))
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
DEG exp

- Significantly differentially expressed cancer types and information. (|Fold change|>1 and FDR<0.05)
Cancer typeMean(exp) in tumorMean(exp) in matched normalLog2FCP-val.FDR
KICH-3.242111366-0.918331366-2.323782.27E-056.69E-05
KIRP-3.277702991-0.464099866-2.8136031259.02E-085.48E-07
KIRC-2.469069311-1.040442922-1.4286263898.77E-062.07E-05
LUAD-0.875645987-3.6048390912.7291931033.00E-111.95E-10
LUSC-1.074126582-3.1054324642.0313058827.77E-061.79E-05
BLCA-1.081961051-3.1207084192.0387473680.006090.030712381
STAD-0.422362366-2.1288686161.706506250.001680.008004915
LIHC-1.438437366-3.8844853662.4460480.0002890.000890248


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TissGene-miRNA for ECEL1

check button Significantly anti-correlated miRNAs of TissGene across 28 cancer types
(Gene-miRNA relations from TargetScanHuman Relsease 7.1, Conserved_Site_Context_Scores.txt.zip, 06.01.2016)
(TCGA IlluminaHiSeq_miRNASeq, log2(RPM+1) data, version 2016-11-21)
(TCGA IlluminaHiSeq_RNASeqV2, log2(normalized_count+1) data, version 2016-08-16)
(Spearman’s Rank Correlation (p-value<0.05 and coefficient<-0.25))
Cancer typemiRNA idmiRNA accessionP-val.Coeff.# samples


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TissGeneMut for ECEL1
TissGeneSNV for ECEL1

check button nsSNV counts per each loci.
Different colors of circles represent different cancer types. Circle size denotes number of samples.
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)

* Click on the image to enlarge it in a new window.
SNV lollipop
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check button Somatic nucleotide variants of TissGene across 28 cancer types
(X-axis: cancer type and Y-axis: % of mutated samples)
The numbers in parentheses are numbers of samples with mutation (nsSNVs).
(TCGA somatic mutation (SNPs and small INDELs) data, version 2016-04-25)
SNV distribution

- nsSNVs sorted by frequency.
AAchangeCancer type# samples
p.A455TCOAD2
p.A378VSTAD1
p.M294ISKCM1
p.A569VMESO1
p.A224VESCA1
p.V335ILGG1
p.A445TLUAD1
p.L270MHNSC1
p.Q624LLIHC1
p.D594VBRCA1
p.A425VTHCA1
p.R355GLUAD1
p.R404CSTAD1
p.Y687NLUAD1
p.S410NSKCM1
p.R418HCOAD1
p.R663WUCS1
p.R439QSKCM1
p.R191CCOAD1
p.D212NSKCM1
p.A420VSTAD1
p.S414YLUSC1
p.G617CLUAD1
p.R195QSTAD1
p.T608IUCEC1
p.Q177RLIHC1
p.D142ECOAD1
p.R756WKIRP1
p.E527QBRCA1
p.A569VLUAD1
p.A166ELUAD1
p.L270QHNSC1
p.S283NSKCM1
p.A569VUCEC1
p.Q318EKIRC1
p.D520NSTAD1
p.C760FSKCM1
p.I721VLIHC1
p.K552TESCA1
p.V238MUCEC1
p.Q384HLUAD1
p.R137CSTAD1
p.R296QLUSC1
p.R723PLUAD1
p.R296QHNSC1
p.E373*LGG1
p.S600FSKCM1
p.A445DESCA1
p.P739TLUAD1
p.A585VACC1
p.G629VSTAD1
p.R652HCOAD1
p.V342LLUAD1
p.E192KSKCM1
p.A305TESCA1
p.A493TCOAD1
p.H461PSKCM1
p.G511DKICH1
p.R390HESCA1
p.T636MSTAD1
p.Y625HPAAD1
p.R418HTHYM1
p.D282NSKCM1
p.G604RLIHC1
p.E429DHNSC1
p.T392APAAD1
p.K552RESCA1
p.T149ISKCM1
p.P566LGBM1
p.A521DUCEC1
p.G623SSKCM1
p.L270KHNSC1
p.G133SSTAD1
p.V292LLUAD1
p.T343MBRCA1
p.C649RHNSC1
p.R663WGBM1
p.Q444PLGG1
p.D330NSKCM1
p.A452VCESC1
p.R296QSKCM1
p.P584SSKCM1
p.D619NPAAD1


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TissGeneCNV for ECEL1

check button Copy number variations of TissGene across 28 cancer types (X-axis: cancer type and Y-axis: % of CNV samples)
(TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes, Gistic2 copy number data, version 2016-08-16)
CNV


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TissGeneFusions for ECEL1

check button Fusion genes including TissGene
(ChimerDB 3.0, 2016-12-01 and TCGA fusion Portal 2015-12-01)
DatabaseSrcCancer typeSampleFusion geneORF5'-gene BP3'-gene BP


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TissGeneNet for ECEL1

check button Co-expressed gene networks based on protein-protein interaction data (CePIN)
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(PINA2 ppi data)


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TissGeneProg for ECEL1

check button Kaplan-Meier plots with logrank tests of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image to enlarge it in a new window.
survival 1

check button Kaplan-Meier plots with logrank test of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 2

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of overall survival (OS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 3

check button Forest plot of Cox proportional hazard ratio (HR) and 95% CI of relapse free survival (RFS) using 28 cancer types
(TCGA IlluminaHiSeq_RNASeqV2, pan-cancer normalized log2(norm_counts+1) data, version 2016-08-16)
(TCGA clinicalMatrix, phenotype data, version 2016-04-27)

* Click on the image enlarge it in a new window.
survival 4

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TissGeneClin for ECEL1
TissGeneDrug for ECEL1

check button Drug information targeting TissGene
(DrugBank Version 5.0.6, 2017-04-01)
DrugBank IDDrug nameDrug activityDrug typeDrug status


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TissGeneDisease for ECEL1

check button Disease information associated with TissGene
(DisGeNet, 2016-06-01)
Disease IDDisease name# pubmedsSource
umls:C0265213Distal arthrogryposis syndrome5BeFree
umls:C3554415ARTHROGRYPOSIS, DISTAL, TYPE 5D4CLINVAR,ORPHANET,UNIPROT
umls:C0005745Blepharoptosis3BeFree
umls:C0033377Ptosis3BeFree
umls:C0003886Arthrogryposis2BeFree
umls:C0027819Neuroblastoma2BeFree
umls:C0038379Strabismus2BeFree
umls:C0332878Congenital joint contractures2BeFree
umls:C0700095Central neuroblastoma2BeFree
umls:C0009917Contracture1BeFree
umls:C0013261Duane Retraction Syndrome1BeFree
umls:C0027868Neuromuscular Diseases1BeFree
umls:C0029089Ophthalmoplegia1BeFree
umls:C0158113Contracture of joint of hand1BeFree
umls:C0175709Centronuclear myopathy1BeFree
umls:C0221369Acquired Camptodactyly1BeFree
umls:C0234362Synkinesis1BeFree
umls:C0426070Flexed fetal attitude1BeFree
umls:C0685409Congenital Camptodactyly1BeFree
umls:C0752282Congenital Structural Myopathy1BeFree