Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20027181

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20027181
Fusion NameHPV-CEACAM5 integration
ValidatedYes
Curated WayCurated
MethodViral capture sequencing (VCS) and whole genome sequencing, followed by analysis using FuseSV
Wet AssayYes
Sample ID-
Sample NameT076
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameSmall cell cervical carcinoma
Disease AbbreviationSCCC
CancerYes
Literature
PubMed ID36216793
JournalNature Communications
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr19
Cytogenetic Bandq13.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start42226291
Hg19 End42226291
Hg38 Start41722371
Hg38 End41722371
Junction Sequence-
Target Gene
Target GeneCEACAM5, ENSG00000267881
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome AccessionNC_001357.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus - 18, complete genome
Virus Genome Length7857 bp
Virus Breakpoint12922
Virus Breakpoint2-
Virus Gene NameE2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-